Cmc04g0094771 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0094771
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	NAC domain protein
Location	CMiso1.1chr04: 7756149 .. 7757729 (+)
RNA-Seq Expression	Cmc04g0094771
Synteny	Cmc04g0094771

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGTGCGCCATCATCAGCCAGTCAACTCAATCAACCCAAAATTTGGTCAACTTCTTTGAAAATTCCAACCATTTATTTTCCCCTTTAAATACTCTCTTCAAAACCCACTTTTCTTCTCCAAATTTTCTATCTCCCTCTTCCATTTTAATTATTCAAAAAAAGAAAAACAAATGCCGACCATTTTTCAGTCCCAACCCCCCCCTCGCCGGAGCCCCTCCGTTGCTGGAAGAGAAGCTGGCCGGACCCGTGCCGTTAGATCCACTTGCAGGAGCCTTAGTTTTGGTGGGATGGTTAGAGGTGGCCGGAATCTGATGGCGCTTCCCGGAGATAGATGCCGCCGGAATCAGGGAAGCAGAGAGGTTTTAAGAAGGGCTTTGATGCCGCCGAGCCGGAGACCCACACTTCGGTGGATGAATTTCCGTCCAACTCCCAGTCGTCTTTCGATGATGTCCATGGCGGAAAGTTAAATCATTAATTTTGTTTTTTGGGATTATTCTTTTATTCTTATTCAACAAATTTCTGGGATTTTCGTTGTATGCTTGGAGAATCTATGGATGATTGAGTTCCTAATATTTTGAGTGAAAATTCGGAATTCTTCGTGGTTTTGTTTATTAACTTTTCATCAATTTTTTGGTGTGTAATGCTTGACCAAAAGCTTATATGACAGTGAAACCAATTTACGGTAGACCAAATTCTTTAGTGTCAGTTTCTTGATTGACGAAGCTGAAATTATTGCTCAAATTTCAATATTTTCAATGTCCATCCACTACATGTGCACGCACAAGTTGGAGAAAGAAATTTTGGTCAACCAAATTTTGGCACATCAACATAGCAAAAAGAACGACCAATTTTATTATTTTTACGGCAACTAAAAATTATTGTCCCTAAATTAAAAATTGAAGCCAAATAAAATGTGAAGTAAAAACGTGTTGCATGCCTTTTTGTGATAGGGCTCGCGACAGTACGACTACAAATAGCTACACTTCAGCTCAAACCAGAAAAGGGAAAAAAAGAAGAAGAAAATCGTGAGGATTAAATAGACGACAACAAATGGCAATCGACAATGACAATGAAAAACCCAAGAGACAACTACTAGAATGAGCGGAAGATCCCACGAGACTCATGGGCCCAAGCTCAAGCCTAACAAGTAAATGGATCCAAGTCCAAGCTAAGCAGTAAAGGGGGTCCAAGCCCGAGCCTAACAAGCAAATAAGCCCAAGCCTACCTGAAGCCCACGAAAATTCTCTATAAATAGAAACATTATCATTCATTTTGAAGATCTTTGGTTAAAGGAAGAATTGAAGCTCTGAATAATCGAAACTCAGAATAACTGAAGCTCTGAAGAATTGAAAATGCAAATTTCAAAAAGCTCTCAAGATATGCAAGTTCTTATCAACCTCGAGATAATCATCTTCTCAAAAATTGATGACTTGGAAAATTAACCTTTCCTTGAATTCGAGAAGATTGAAGCTCAAACAAACTTGTAACCACAACTTCCTGAAGCTTGAAGATAAAAAACTTTTAAATATTAATTTGTATATAAGAGAAAGCATCAAACAAGTAAATATTAGAGATTGTATC

mRNA sequence

GAGTGCGCCATCATCAGCCAGTCAACTCAATCAACCCAAAATTTGGTCAACTTCTTTGAAAATTCCAACCATTTATTTTCCCCTTTAAATACTCTCTTCAAAACCCACTTTTCTTCTCCAAATTTTCTATCTCCCTCTTCCATTTTAATTATTCAAAAAAAGAAAAACAAATGCCGACCATTTTTCAGTCCCAACCCCCCCCTCGCCGGAGCCCCTCCGTTGCTGGAAGAGAAGCTGGCCGGACCCGTGCCGTTAGATCCACTTGCAGGAGCCTTAGTTTTGGTGGGATGGTTAGAGGTGGCCGGAATCTGATGGCGCTTCCCGGAGATAGATGCCGCCGGAATCAGGGAAGCAGAGAGGTTTTAAGAAGGGCTTTGATGCCGCCGAGCCGGAGACCCACACTTCGGTGGATGAATTTCCGTCCAACTCCCAGTCGTCTTTCGATGATGTCCATGGCGGAAAGTTAAATCATTAATTTTGTTTTTTGGGATTATTCTTTTATTCTTATTCAACAAATTTCTGGGATTTTCGTTGTATGCTTGGAGAATCTATGGATGATTGAGTTCCTAATATTTTGAGTGAAAATTCGGAATTCTTCGTGGTTTTGTTTATTAACTTTTCATCAATTTTTTGGTGTGTAATGCTTGACCAAAAGCTTATATGACAGTGAAACCAATTTACGGTAGACCAAATTCTTTAGTGTCAGTTTCTTGATTGACGAAGCTGAAATTATTGCTCAAATTTCAATATTTTCAATGTCCATCCACTACATGTGCACGCACAAGTTGGAGAAAGAAATTTTGGTCAACCAAATTTTGGCACATCAACATAGCAAAAAGAACGACCAATTTTATTATTTTTACGGCAACTAAAAATTATTGTCCCTAAATTAAAAATTGAAGCCAAATAAAATGTGAAGTAAAAACGTGTTGCATGCCTTTTTGTGATAGGGCTCGCGACAGTACGACTACAAATAGCTACACTTCAGCTCAAACCAGAAAAGGGAAAAAAAGAAGAAGAAAATCGTGAGGATTAAATAGACGACAACAAATGGCAATCGACAATGACAATGAAAAACCCAAGAGACAACTACTAGAATGAGCGGAAGATCCCACGAGACTCATGGGCCCAAGCTCAAGCCTAACAAGTAAATGGATCCAAGTCCAAGCTAAGCAGTAAAGGGGGTCCAAGCCCGAGCCTAACAAGCAAATAAGCCCAAGCCTACCTGAAGCCCACGAAAATTCTCTATAAATAGAAACATTATCATTCATTTTGAAGATCTTTGGTTAAAGGAAGAATTGAAGCTCTGAATAATCGAAACTCAGAATAACTGAAGCTCTGAAGAATTGAAAATGCAAATTTCAAAAAGCTCTCAAGATATGCAAGTTCTTATCAACCTCGAGATAATCATCTTCTCAAAAATTGATGACTTGGAAAATTAACCTTTCCTTGAATTCGAGAAGATTGAAGCTCAAACAAACTTGTAACCACAACTTCCTGAAGCTTGAAGATAAAAAACTTTTAAATATTAATTTGTATATAAGAGAAAGCATCAAACAAGTAAATATTAGAGATTGTATC

Coding sequence (CDS)

ATGCCGACCATTTTTCAGTCCCAACCCCCCCCTCGCCGGAGCCCCTCCGTTGCTGGAAGAGAAGCTGGCCGGACCCGTGCCGTTAGATCCACTTGCAGGAGCCTTAGTTTTGGTGGGATGGTTAGAGGTGGCCGGAATCTGATGGCGCTTCCCGGAGATAGATGCCGCCGGAATCAGGGAAGCAGAGAGGTTTTAAGAAGGGCTTTGATGCCGCCGAGCCGGAGACCCACACTTCGGTGGATGAATTTCCGTCCAACTCCCAGTCGTCTTTCGATGATGTCCATGGCGGAAAGTTAA

Protein sequence

MPTIFQSQPPPRRSPSVAGREAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMAES

Homology

[Close]

BLAST of Cmc04g0094771 vs. NCBI nr
Match: KAA0036871.1 (uncharacterized protein E6C27_scaffold20G001820 [Cucumis melo var. makuwa] >TYJ95931.1 uncharacterized protein E5676_scaffold110G002460 [Cucumis melo var. makuwa])

HSP 1 Score: 194.5 bits (493), Expect = 4.3e-46
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MPTIFQSQPPPRRSPSVAGREAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRNQG 60
          MPTIFQSQPPPRRSPSVAGREAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRNQG
Sbjct: 1  MPTIFQSQPPPRRSPSVAGREAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMAES 99
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMAES
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMAES 98

[Close]

BLAST of Cmc04g0094771 vs. NCBI nr
Match: XP_011652880.1 (uncharacterized protein LOC105435142 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 1.2e-43
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1  MPTIFQSQPPPRRSPSVAGREAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRNQG 60
          MPTIFQSQPPPRR+PSVAGRE GR RAVRSTCRS SFGGMVRGGRNLMALPGDRCRRNQG
Sbjct: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMAES 99
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLS+MSMAES
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES 98

[Close]

BLAST of Cmc04g0094771 vs. NCBI nr
Match: KGN60027.2 (hypothetical protein Csa_001878 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 2.6e-43
Identity = 92/98 (93.88%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1  MPTIFQSQPPPRRSPSVAGREAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRNQG 60
          MPTIFQSQPPPRR+PSVAGRE GR RAVRSTCRS SFGGMVRGGRNLMALPGDRCRRNQG
Sbjct: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMAES 99
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLS+MSMAE+
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAEN 98

[Close]

BLAST of Cmc04g0094771 vs. NCBI nr
Match: KAG7024857.1 (hypothetical protein SDJN02_13676, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.9 bits (346), Expect = 4.7e-29
Identity = 73/100 (73.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 1  MPTIFQSQPPPRRSPSVAGREAGR--TRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRN 60
          MPTIFQSQP P R PS+A   AGR  +R++RSTCRS SF GMVR GRN+M   GD+ RRN
Sbjct: 1  MPTIFQSQPQPDRRPSLAA-AAGREPSRSIRSTCRSFSFSGMVRSGRNVMTAGGDKFRRN 60

Query: 61 QGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMAES 99
          QG REVLRRALMPP+R+PTLRW+NFRPTPSRLS MSMAE+
Sbjct: 61 QGRREVLRRALMPPTRKPTLRWLNFRPTPSRLSNMSMAEA 99

[Close]

BLAST of Cmc04g0094771 vs. NCBI nr
Match: KAG6607862.1 (hypothetical protein SDJN03_01204, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037392.1 hypothetical protein SDJN02_01017, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.4 bits (311), Expect = 5.4e-25
Identity = 69/98 (70.41%), Postives = 78/98 (79.59%), Query Frame = 0


Query: 1  MPTIFQSQPPPRRSPSVAG--REAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRN 60
          MPTIFQSQ  P   PS AG  RE GR+R++RS CRSLSFGG+ RGGRN+ A  GD+ RR 
Sbjct: 1  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVGRGGRNVTA-AGDKLRRL 60

Query: 61 QGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMA 97
          QG RE+LRRAL PP+RRPTLRW+NFR TPSRLS MSMA
Sbjct: 61 QGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA 97

[Close]

BLAST of Cmc04g0094771 vs. ExPASy TrEMBL
Match: A0A5A7T5L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002460 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.1e-46
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MPTIFQSQPPPRRSPSVAGREAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRNQG 60
          MPTIFQSQPPPRRSPSVAGREAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRNQG
Sbjct: 1  MPTIFQSQPPPRRSPSVAGREAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMAES 99
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMAES
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMAES 98

[Close]

BLAST of Cmc04g0094771 vs. ExPASy TrEMBL
Match: A0A0A0LD23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852440 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.6e-44
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1  MPTIFQSQPPPRRSPSVAGREAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRNQG 60
          MPTIFQSQPPPRR+PSVAGRE GR RAVRSTCRS SFGGMVRGGRNLMALPGDRCRRNQG
Sbjct: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMAES 99
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLS+MSMAES
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES 98

[Close]

BLAST of Cmc04g0094771 vs. ExPASy TrEMBL
Match: A0A6N2MHB8 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS358945 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.4e-12
Identity = 52/108 (48.15%), Postives = 63/108 (58.33%), Query Frame = 0


Query: 1   MPTIFQSQP------PPRRSPSVAGREAGRTRAV------RSTCRSLSFGGMVRGGRNLM 60
           M TI Q Q       P R+SP    R     +A       RSTC   +  G VR  ++  
Sbjct: 1   METISQKQTIRRLPIPARQSPGEGIRARRNNQAASISPGPRSTCTCSNRPGSVRCSKHGY 60

Query: 61  ALPGDRCRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMA 97
            +P DR RR+Q +RE+LRRAL PP+RR TLRW NF+PTPSRLS MSMA
Sbjct: 61  LVPSDRLRRHQANREILRRALAPPNRRLTLRWFNFQPTPSRLSNMSMA 108

[Close]

BLAST of Cmc04g0094771 vs. ExPASy TrEMBL
Match: A0A4U5P590 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000228140 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.7e-12
Identity = 48/95 (50.53%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 8   QPPPRRSPSVAGR------EAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRNQGS 67
           QPP R+S     R      EA  +   RSTC   +  G VR  ++   +P D+ RRNQ +
Sbjct: 14  QPPARQSLGEGNRVRRNNQEASISPRPRSTCTCSNRPGSVRCSKHGYLVPSDKLRRNQAN 73

Query: 68  REVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMA 97
            E+LRRAL PP+RR TLRW NF+PTPSRLS MSMA
Sbjct: 74  TEILRRALAPPNRRLTLRWFNFQPTPSRLSNMSMA 108

[Close]

BLAST of Cmc04g0094771 vs. ExPASy TrEMBL
Match: B9N1L2 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G404500 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.2e-11
Identity = 51/108 (47.22%), Postives = 60/108 (55.56%), Query Frame = 0


Query: 1   MPTIFQSQ-----PPPRRSPSVAGREAGRTRAV-------RSTCRSLSFGGMVRGGRNLM 60
           M TI Q Q      PP R     G    R   V       RSTC   +  G VR  ++  
Sbjct: 1   METISQKQTRGRLQPPARQSLGEGNRVRRNNQVASISPRPRSTCTCSNRPGSVRCSKHGY 60

Query: 61  ALPGDRCRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMA 97
            +P D+ RRNQ + E+LRRAL PP+RR TLRW NF+PTPSRLS MSMA
Sbjct: 61  LVPSDKLRRNQANTEILRRALAPPNRRLTLRWFNFQPTPSRLSNMSMA 108

[Close]

BLAST of Cmc04g0094771 vs. TAIR 10
Match: AT3G15518.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-09
Identity = 40/89 (44.94%), Postives = 48/89 (53.93%), Query Frame = 0


Query: 11  PRRSPS--VAGREAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDR---CRRNQGSREVL 70
           P RS +  +  R  G    VR  C      G  +  R+   +P D     + + GSREVL
Sbjct: 16  PGRSETNRIRRRSHGSGLRVRVACTCSGRPGSTKCARHGFVVPSDERLMRKASDGSREVL 75

Query: 71  RRALMPPSRRPTLRWMNFRPTPSRLSMMS 95
           RRAL PP RR  LRW+NFRPTPSRL  MS
Sbjct: 76  RRALTPPIRRMNLRWLNFRPTPSRLCKMS 104

The following BLAST results are available for this feature:

BLAST of Cmc04g0094771 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036871.1	4.3e-46	100.00	uncharacterized protein E6C27_scaffold20G001820 [Cucumis melo var. makuwa] >TYJ9...	[more]
XP_011652880.1	1.2e-43	94.90	uncharacterized protein LOC105435142 [Cucumis sativus]	[more]
KGN60027.2	2.6e-43	93.88	hypothetical protein Csa_001878 [Cucumis sativus]	[more]
KAG7024857.1	4.7e-29	73.00	hypothetical protein SDJN02_13676, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6607862.1	5.4e-25	70.41	hypothetical protein SDJN03_01204, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cmc04g0094771 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc04g0094771 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T5L7	2.1e-46	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LD23	5.6e-44	94.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852440 PE=4 SV=1	[more]
A0A6N2MHB8	7.4e-12	48.15	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS358945 PE=4 SV=...	[more]
A0A4U5P590	9.7e-12	50.53	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000228140 PE=4 SV=1	[more]
B9N1L2	2.2e-11	47.22	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G404500 PE=4 ...	[more]

BLAST of Cmc04g0094771 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15518.1	2.0e-09	44.94	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0094771.1	Cmc04g0094771.1	mRNA