Cmc04g0094221 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0094221
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr04: 6730812 .. 6731459 (+)
RNA-Seq Expression	Cmc04g0094221
Synteny	Cmc04g0094221

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCAGTAGAATTGAAAGAGCTGAAAGTGCAGTTACAAGAGTTGCTTGATAAAGGCTTCATTTGGTCGAGTGTGTCACCTTGGGGTGCACCAGTCTTATTTGTTAAGAAGAAGGATGGATCGATGTGCCTATGTATTGACTACAGGAAGTTGAATAAGGTAACCGTTAAGAACAAATACCCCTTGCCCAGGATTGACGATTTGTTTGACCAGTTACAGGGAGCTACAGTGTTTTCTAAGATCGGCCTTCGGTCGGGATATCATCAGCTGAGGATTAAGGATAGCGATGTACCGAAGACAACCTTTCGTTCCAGATATGGGCACTATGAGTTTATTGTGATATCTATTGGTTTGACGAATGCTCCAGCAGTGTTTATGGATTTGATGAACAGAGTGTTTAGAGAGTTCCTAGACACTTTTGTGATCGTTTATATTGATTATATTTTGATAAATTCCAAGACAGAGGCTGAGCATGAGGAGCATTTACGTATGGTTCTAGAAACCCTTCGAGCTAATAAACTGTATGCAAAGTTCTCAAAATGTGAATTTTGGTTGAAGCAGGTATCATTTCTAGGCCATGTGGTTTCTAAACCTGGTATTTTCGTGGATCCAGCTAAGATAGAAGCAGTCACCAGTTGGCCCTGA

mRNA sequence

ATGGCCTCAGTAGAATTGAAAGAGCTGAAAGTGCAGTTACAAGAGTTGCTTGATAAAGGCTTCATTTGGTCGAGTGTGTCACCTTGGGGTGCACCAGTCTTATTTGTTAAGAAGAAGGATGGATCGATGTGCCTATGTATTGACTACAGGAAGTTGAATAAGGTAACCGTTAAGAACAAATACCCCTTGCCCAGGATTGACGATTTGTTTGACCAGTTACAGGGAGCTACAGTGTTTTCTAAGATCGGCCTTCGGTCGGGATATCATCAGCTGAGGATTAAGGATAGCGATGTACCGAAGACAACCTTTCGTTCCAGATATGGGCACTATGAGTTTATTGTGATATCTATTGGTTTGACGAATGCTCCAGCAGTGTTTATGGATTTGATGAACAGAGTGTTTAGAGAGTTCCTAGACACTTTTGTGATCGTTTATATTGATTATATTTTGATAAATTCCAAGACAGAGGCTGAGCATGAGGAGCATTTACGTATGGTTCTAGAAACCCTTCGAGCTAATAAACTGTATGCAAAGTTCTCAAAATGTGAATTTTGGTTGAAGCAGGTATCATTTCTAGGCCATGTGGTTTCTAAACCTGGTATTTTCGTGGATCCAGCTAAGATAGAAGCAGTCACCAGTTGGCCCTGA

Coding sequence (CDS)

ATGGCCTCAGTAGAATTGAAAGAGCTGAAAGTGCAGTTACAAGAGTTGCTTGATAAAGGCTTCATTTGGTCGAGTGTGTCACCTTGGGGTGCACCAGTCTTATTTGTTAAGAAGAAGGATGGATCGATGTGCCTATGTATTGACTACAGGAAGTTGAATAAGGTAACCGTTAAGAACAAATACCCCTTGCCCAGGATTGACGATTTGTTTGACCAGTTACAGGGAGCTACAGTGTTTTCTAAGATCGGCCTTCGGTCGGGATATCATCAGCTGAGGATTAAGGATAGCGATGTACCGAAGACAACCTTTCGTTCCAGATATGGGCACTATGAGTTTATTGTGATATCTATTGGTTTGACGAATGCTCCAGCAGTGTTTATGGATTTGATGAACAGAGTGTTTAGAGAGTTCCTAGACACTTTTGTGATCGTTTATATTGATTATATTTTGATAAATTCCAAGACAGAGGCTGAGCATGAGGAGCATTTACGTATGGTTCTAGAAACCCTTCGAGCTAATAAACTGTATGCAAAGTTCTCAAAATGTGAATTTTGGTTGAAGCAGGTATCATTTCTAGGCCATGTGGTTTCTAAACCTGGTATTTTCGTGGATCCAGCTAAGATAGAAGCAGTCACCAGTTGGCCCTGA

Protein sequence

MASVELKELKVQLQELLDKGFIWSSVSPWGAPVLFVKKKDGSMCLCIDYRKLNKVTVKNKYPLPRIDDLFDQLQGATVFSKIGLRSGYHQLRIKDSDVPKTTFRSRYGHYEFIVISIGLTNAPAVFMDLMNRVFREFLDTFVIVYIDYILINSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKPGIFVDPAKIEAVTSWP

Homology

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BLAST of Cmc04g0094221 vs. NCBI nr
Match: TYK04315.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 394.8 bits (1013), Expect = 4.7e-106
Identity = 195/215 (90.70%), Postives = 201/215 (93.49%), Query Frame = 0


Query: 1   MASVELKELKVQLQELLDKGFIWSSVSPWGAPVLFVKKKDGSMCLCIDYRKLNKVTVKNK 60
           MA VELKELKVQLQELLDKGFI  SVSPWGAPVLFVKKKDGSM LCIDYR+LNKVTVKN+
Sbjct: 681 MAPVELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMHLCIDYRELNKVTVKNR 740

Query: 61  YPLPRIDDLFDQLQGATVFSKIGLRSGYHQLRIKDSDVPKTTFRSRYGHYEFIVISIGLT 120
           YPLPRIDDLFDQLQGATVFSKI LRSGYHQLRIKD DVPKT FRSRYGHYEFIV+S GLT
Sbjct: 741 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 800

Query: 121 NAPAVFMDLMNRVFREFLDTFVIVYIDYILINSKTEAEHEEHLRMVLETLRANKLYAKFS 180
           NAP VFMDLMNRVFREFLDTFVIV+ID ILI SKTEAEHEEHLRMVL+TLR NKLYAKFS
Sbjct: 801 NAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 860

Query: 181 KCEFWLKQVSFLGHVVSKPGIFVDPAKIEAVTSWP 216
           KCEFWLKQVSFLGHVVSK G+ VDPAKIEAVTSWP
Sbjct: 861 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWP 895

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BLAST of Cmc04g0094221 vs. NCBI nr
Match: KAA0052348.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 394.4 bits (1012), Expect = 6.1e-106
Identity = 193/215 (89.77%), Postives = 201/215 (93.49%), Query Frame = 0


Query: 1   MASVELKELKVQLQELLDKGFIWSSVSPWGAPVLFVKKKDGSMCLCIDYRKLNKVTVKNK 60
           MA  ELKELKVQLQELLDKGFI SSVSPWGAPVLFVKKKDGSM LCIDYR+LNKVTVKN+
Sbjct: 456 MAPAELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 515

Query: 61  YPLPRIDDLFDQLQGATVFSKIGLRSGYHQLRIKDSDVPKTTFRSRYGHYEFIVISIGLT 120
           YPLPRIDDLFDQLQGATVFSKI LRSGYHQLRIKD DVPK  FRSRYGHYEFIV+S GLT
Sbjct: 516 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKIAFRSRYGHYEFIVMSFGLT 575

Query: 121 NAPAVFMDLMNRVFREFLDTFVIVYIDYILINSKTEAEHEEHLRMVLETLRANKLYAKFS 180
           NAP VFMDLMNRVFREFLDTFVIV+ID ILI SKTEAEHEEHLRMVL+TLR NKLYAKFS
Sbjct: 576 NAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 635

Query: 181 KCEFWLKQVSFLGHVVSKPGIFVDPAKIEAVTSWP 216
           KCEFWLKQVSFLGHVVSK G++VDPAKIEA+TSWP
Sbjct: 636 KCEFWLKQVSFLGHVVSKAGVYVDPAKIEAITSWP 670

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BLAST of Cmc04g0094221 vs. NCBI nr
Match: TYK01903.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 394.4 bits (1012), Expect = 6.1e-106
Identity = 193/215 (89.77%), Postives = 201/215 (93.49%), Query Frame = 0


Query: 1   MASVELKELKVQLQELLDKGFIWSSVSPWGAPVLFVKKKDGSMCLCIDYRKLNKVTVKNK 60
           MA  ELKELKVQLQELLDKGFI SSVSPWGAPVLFVKKKDGSM LCIDYR+LNKVTVKN+
Sbjct: 456 MAPAELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 515

Query: 61  YPLPRIDDLFDQLQGATVFSKIGLRSGYHQLRIKDSDVPKTTFRSRYGHYEFIVISIGLT 120
           YPLPRIDDLFDQLQGATVFSKI LRSGYHQLRIKD DVPK  FRSRYGHYEFIV+S GLT
Sbjct: 516 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKIAFRSRYGHYEFIVMSFGLT 575

Query: 121 NAPAVFMDLMNRVFREFLDTFVIVYIDYILINSKTEAEHEEHLRMVLETLRANKLYAKFS 180
           NAP VFMDLMNRVFREFLDTFVIV+ID ILI SKTEAEHEEHLRMVL+TLR NKLYAKFS
Sbjct: 576 NAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 635

Query: 181 KCEFWLKQVSFLGHVVSKPGIFVDPAKIEAVTSWP 216
           KCEFWLKQVSFLGHVVSK G++VDPAKIEA+TSWP
Sbjct: 636 KCEFWLKQVSFLGHVVSKAGVYVDPAKIEAITSWP 670

[Close]

BLAST of Cmc04g0094221 vs. NCBI nr
Match: KAA0054669.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 393.7 bits (1010), Expect = 1.0e-105
Identity = 193/215 (89.77%), Postives = 200/215 (93.02%), Query Frame = 0


Query: 1   MASVELKELKVQLQELLDKGFIWSSVSPWGAPVLFVKKKDGSMCLCIDYRKLNKVTVKNK 60
           MA  ELKELKVQLQELLDKGFI  SVSPWGAPVLFVKKKDGSMCLCIDYR+LNKVTVKN+
Sbjct: 127 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMCLCIDYRELNKVTVKNR 186

Query: 61  YPLPRIDDLFDQLQGATVFSKIGLRSGYHQLRIKDSDVPKTTFRSRYGHYEFIVISIGLT 120
           YPLPRIDDLFDQLQ ATVFSKI LRSGYHQLRIKD DVPKTTFRSRYGHYEFIV+S GLT
Sbjct: 187 YPLPRIDDLFDQLQRATVFSKIDLRSGYHQLRIKDGDVPKTTFRSRYGHYEFIVMSFGLT 246

Query: 121 NAPAVFMDLMNRVFREFLDTFVIVYIDYILINSKTEAEHEEHLRMVLETLRANKLYAKFS 180
           NAP VFMDLMNRVFREFLDTF+IV+ID ILI SKTEAEHEEHLRMVL+TL  NKLYAKFS
Sbjct: 247 NAPTVFMDLMNRVFREFLDTFLIVFIDDILIYSKTEAEHEEHLRMVLQTLEDNKLYAKFS 306

Query: 181 KCEFWLKQVSFLGHVVSKPGIFVDPAKIEAVTSWP 216
           KCEFWLKQVSFLGHVVSK G+ VDPAKIEAVTSWP
Sbjct: 307 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWP 341

[Close]

BLAST of Cmc04g0094221 vs. NCBI nr
Match: TYK08602.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 393.7 bits (1010), Expect = 1.0e-105
Identity = 193/215 (89.77%), Postives = 200/215 (93.02%), Query Frame = 0


Query: 1   MASVELKELKVQLQELLDKGFIWSSVSPWGAPVLFVKKKDGSMCLCIDYRKLNKVTVKNK 60
           MA  ELKELKVQLQELLDKGFI  SVSPWGAPVLFVKKKDGSMCLCIDYR+LNKVTVKN+
Sbjct: 147 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMCLCIDYRELNKVTVKNR 206

Query: 61  YPLPRIDDLFDQLQGATVFSKIGLRSGYHQLRIKDSDVPKTTFRSRYGHYEFIVISIGLT 120
           YPLPRIDDLFDQLQ ATVFSKI LRSGYHQLRIKD DVPKTTFRSRYGHYEFIV+S GLT
Sbjct: 207 YPLPRIDDLFDQLQRATVFSKIDLRSGYHQLRIKDGDVPKTTFRSRYGHYEFIVMSFGLT 266

Query: 121 NAPAVFMDLMNRVFREFLDTFVIVYIDYILINSKTEAEHEEHLRMVLETLRANKLYAKFS 180
           NAP VFMDLMNRVFREFLDTF+IV+ID ILI SKTEAEHEEHLRMVL+TL  NKLYAKFS
Sbjct: 267 NAPTVFMDLMNRVFREFLDTFLIVFIDDILIYSKTEAEHEEHLRMVLQTLEDNKLYAKFS 326

Query: 181 KCEFWLKQVSFLGHVVSKPGIFVDPAKIEAVTSWP 216
           KCEFWLKQVSFLGHVVSK G+ VDPAKIEAVTSWP
Sbjct: 327 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWP 361

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BLAST of Cmc04g0094221 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.6e-40
Identity = 82/214 (38.32%), Postives = 134/214 (62.62%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIWSSVSPWGAPVLFV-KKKDGS----MCLCIDYRKLNKVTVKNKY 66
           +E++ Q+Q++L++G I +S SP+ +P+  V KK+D S      + IDYRKLN++TV +++
Sbjct: 221 QEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRH 280

Query: 67  PLPRIDDLFDQLQGATVFSKIGLRSGYHQLRIKDSDVPKTTFRSRYGHYEFIVISIGLTN 126
           P+P +D++  +L     F+ I L  G+HQ+ +    V KT F +++GHYE++ +  GL N
Sbjct: 281 PIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKN 340

Query: 127 APAVFMDLMNRVFREFLDTFVIVYIDYILINSKTEAEHEEHLRMVLETLRANKLYAKFSK 186
           APA F   MN + R  L+   +VY+D I++ S +  EH + L +V E L    L  +  K
Sbjct: 341 APATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDK 400

Query: 187 CEFWLKQVSFLGHVVSKPGIFVDPAKIEAVTSWP 216
           CEF  ++ +FLGHV++  GI  +P KIEA+  +P
Sbjct: 401 CEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYP 434

[Close]

BLAST of Cmc04g0094221 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.7e-40
Identity = 81/213 (38.03%), Postives = 130/213 (61.03%), Query Frame = 0


Query: 8   ELKVQLQELLDKGFIWSSVSPWGAPVLFV-KKKDGSMC----LCIDYRKLNKVTVKNKYP 67
           E++ Q+QE+L++G I  S SP+ +P   V KK D S      + IDYRKLN++T+ ++YP
Sbjct: 221 EVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYP 280

Query: 68  LPRIDDLFDQLQGATVFSKIGLRSGYHQLRIKDSDVPKTTFRSRYGHYEFIVISIGLTNA 127
           +P +D++  +L     F+ I L  G+HQ+ + +  + KT F ++ GHYE++ +  GL NA
Sbjct: 281 IPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNA 340

Query: 128 PAVFMDLMNRVFREFLDTFVIVYIDYILINSKTEAEHEEHLRMVLETLRANKLYAKFSKC 187
           PA F   MN + R  L+   +VY+D I+I S +  EH   +++V   L    L  +  KC
Sbjct: 341 PATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKC 400

Query: 188 EFWLKQVSFLGHVVSKPGIFVDPAKIEAVTSWP 216
           EF  K+ +FLGH+V+  GI  +P K++A+ S+P
Sbjct: 401 EFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYP 433

[Close]

BLAST of Cmc04g0094221 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 164.1 bits (414), Expect = 1.8e-39
Identity = 87/209 (41.63%), Postives = 124/209 (59.33%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIWSSVSPWGAPVLFVKKKDGSMCLCIDYRKLNKVTVKNKYPLPRI 66
           +E+   +Q+LLD  FI  S SP  +PV+ V KKDG+  LC+DYR LNK T+ + +PLPRI
Sbjct: 610 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 669

Query: 67  DDLFDQLQGATVFSKIGLRSGYHQLRIKDSDVPKTTFRSRYGHYEFIVISIGLTNAPAVF 126
           D+L  ++  A +F+ + L SGYHQ+ ++  D  KT F +  G YE+ V+  GL NAP+ F
Sbjct: 670 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTF 729

Query: 127 MDLMNRVFREFLDTFVIVYIDYILINSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWL 186
              M   FR+    FV VY+D ILI S++  EH +HL  VLE L+   L  K  KC+F  
Sbjct: 730 ARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFAS 789

Query: 187 KQVSFLGHVVSKPGIFVDPAKIEAVTSWP 216
           ++  FLG+ +    I     K  A+  +P
Sbjct: 790 EETEFLGYSIGIQKIAPLQHKCAAIRDFP 816

[Close]

BLAST of Cmc04g0094221 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 164.1 bits (414), Expect = 1.8e-39
Identity = 87/209 (41.63%), Postives = 124/209 (59.33%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIWSSVSPWGAPVLFVKKKDGSMCLCIDYRKLNKVTVKNKYPLPRI 66
           +E+   +Q+LLD  FI  S SP  +PV+ V KKDG+  LC+DYR LNK T+ + +PLPRI
Sbjct: 636 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 695

Query: 67  DDLFDQLQGATVFSKIGLRSGYHQLRIKDSDVPKTTFRSRYGHYEFIVISIGLTNAPAVF 126
           D+L  ++  A +F+ + L SGYHQ+ ++  D  KT F +  G YE+ V+  GL NAP+ F
Sbjct: 696 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTF 755

Query: 127 MDLMNRVFREFLDTFVIVYIDYILINSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWL 186
              M   FR+    FV VY+D ILI S++  EH +HL  VLE L+   L  K  KC+F  
Sbjct: 756 ARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFAS 815

Query: 187 KQVSFLGHVVSKPGIFVDPAKIEAVTSWP 216
           ++  FLG+ +    I     K  A+  +P
Sbjct: 816 EETEFLGYSIGIQKIAPLQHKCAAIRDFP 842

[Close]

BLAST of Cmc04g0094221 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.4e-38
Identity = 76/210 (36.19%), Postives = 128/210 (60.95%), Query Frame = 0


Query: 5   ELKELKVQLQELLDKGFIWSSVSPWGAPVLFVKKKDGSMCLCIDYRKLNKVTVKNKYPLP 64
           +++ +  ++ + L  G I  S +    PV+FV KK+G++ + +DY+ LNK    N YPLP
Sbjct: 424 KMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLP 483

Query: 65  RIDDLFDQLQGATVFSKIGLRSGYHQLRIKDSDVPKTTFRSRYGHYEFIVISIGLTNAPA 124
            I+ L  ++QG+T+F+K+ L+S YH +R++  D  K  FR   G +E++V+  G++ APA
Sbjct: 484 LIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPA 543

Query: 125 VFMDLMNRVFREFLDTFVIVYIDYILINSKTEAEHEEHLRMVLETLRANKLYAKFSKCEF 184
            F   +N +  E  ++ V+ Y+D ILI+SK+E+EH +H++ VL+ L+   L    +KCEF
Sbjct: 544 HFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEF 603

Query: 185 WLKQVSFLGHVVSKPGIFVDPAKIEAVTSW 215
              QV F+G+ +S+ G       I+ V  W
Sbjct: 604 HQSQVKFIGYHISEKGFTPCQENIDKVLQW 633

[Close]

BLAST of Cmc04g0094221 vs. ExPASy TrEMBL
Match: A0A5D3BYT1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00450 PE=4 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 2.3e-106
Identity = 195/215 (90.70%), Postives = 201/215 (93.49%), Query Frame = 0


Query: 1   MASVELKELKVQLQELLDKGFIWSSVSPWGAPVLFVKKKDGSMCLCIDYRKLNKVTVKNK 60
           MA VELKELKVQLQELLDKGFI  SVSPWGAPVLFVKKKDGSM LCIDYR+LNKVTVKN+
Sbjct: 681 MAPVELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMHLCIDYRELNKVTVKNR 740

Query: 61  YPLPRIDDLFDQLQGATVFSKIGLRSGYHQLRIKDSDVPKTTFRSRYGHYEFIVISIGLT 120
           YPLPRIDDLFDQLQGATVFSKI LRSGYHQLRIKD DVPKT FRSRYGHYEFIV+S GLT
Sbjct: 741 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 800

Query: 121 NAPAVFMDLMNRVFREFLDTFVIVYIDYILINSKTEAEHEEHLRMVLETLRANKLYAKFS 180
           NAP VFMDLMNRVFREFLDTFVIV+ID ILI SKTEAEHEEHLRMVL+TLR NKLYAKFS
Sbjct: 801 NAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 860

Query: 181 KCEFWLKQVSFLGHVVSKPGIFVDPAKIEAVTSWP 216
           KCEFWLKQVSFLGHVVSK G+ VDPAKIEAVTSWP
Sbjct: 861 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWP 895

[Close]

BLAST of Cmc04g0094221 vs. ExPASy TrEMBL
Match: A0A5A7UAV9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G001870 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 3.0e-106
Identity = 193/215 (89.77%), Postives = 201/215 (93.49%), Query Frame = 0


Query: 1   MASVELKELKVQLQELLDKGFIWSSVSPWGAPVLFVKKKDGSMCLCIDYRKLNKVTVKNK 60
           MA  ELKELKVQLQELLDKGFI SSVSPWGAPVLFVKKKDGSM LCIDYR+LNKVTVKN+
Sbjct: 456 MAPAELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 515

Query: 61  YPLPRIDDLFDQLQGATVFSKIGLRSGYHQLRIKDSDVPKTTFRSRYGHYEFIVISIGLT 120
           YPLPRIDDLFDQLQGATVFSKI LRSGYHQLRIKD DVPK  FRSRYGHYEFIV+S GLT
Sbjct: 516 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKIAFRSRYGHYEFIVMSFGLT 575

Query: 121 NAPAVFMDLMNRVFREFLDTFVIVYIDYILINSKTEAEHEEHLRMVLETLRANKLYAKFS 180
           NAP VFMDLMNRVFREFLDTFVIV+ID ILI SKTEAEHEEHLRMVL+TLR NKLYAKFS
Sbjct: 576 NAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 635

Query: 181 KCEFWLKQVSFLGHVVSKPGIFVDPAKIEAVTSWP 216
           KCEFWLKQVSFLGHVVSK G++VDPAKIEA+TSWP
Sbjct: 636 KCEFWLKQVSFLGHVVSKAGVYVDPAKIEAITSWP 670

[Close]

BLAST of Cmc04g0094221 vs. ExPASy TrEMBL
Match: A0A5D3BQD5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G001680 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 3.0e-106
Identity = 193/215 (89.77%), Postives = 201/215 (93.49%), Query Frame = 0


Query: 1   MASVELKELKVQLQELLDKGFIWSSVSPWGAPVLFVKKKDGSMCLCIDYRKLNKVTVKNK 60
           MA  ELKELKVQLQELLDKGFI SSVSPWGAPVLFVKKKDGSM LCIDYR+LNKVTVKN+
Sbjct: 456 MAPAELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 515

Query: 61  YPLPRIDDLFDQLQGATVFSKIGLRSGYHQLRIKDSDVPKTTFRSRYGHYEFIVISIGLT 120
           YPLPRIDDLFDQLQGATVFSKI LRSGYHQLRIKD DVPK  FRSRYGHYEFIV+S GLT
Sbjct: 516 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKIAFRSRYGHYEFIVMSFGLT 575

Query: 121 NAPAVFMDLMNRVFREFLDTFVIVYIDYILINSKTEAEHEEHLRMVLETLRANKLYAKFS 180
           NAP VFMDLMNRVFREFLDTFVIV+ID ILI SKTEAEHEEHLRMVL+TLR NKLYAKFS
Sbjct: 576 NAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 635

Query: 181 KCEFWLKQVSFLGHVVSKPGIFVDPAKIEAVTSWP 216
           KCEFWLKQVSFLGHVVSK G++VDPAKIEA+TSWP
Sbjct: 636 KCEFWLKQVSFLGHVVSKAGVYVDPAKIEAITSWP 670

[Close]

BLAST of Cmc04g0094221 vs. ExPASy TrEMBL
Match: A0A5D3CBC8 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3734G00240 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 5.1e-106
Identity = 193/215 (89.77%), Postives = 200/215 (93.02%), Query Frame = 0


Query: 1   MASVELKELKVQLQELLDKGFIWSSVSPWGAPVLFVKKKDGSMCLCIDYRKLNKVTVKNK 60
           MA  ELKELKVQLQELLDKGFI  SVSPWGAPVLFVKKKDGSMCLCIDYR+LNKVTVKN+
Sbjct: 147 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMCLCIDYRELNKVTVKNR 206

Query: 61  YPLPRIDDLFDQLQGATVFSKIGLRSGYHQLRIKDSDVPKTTFRSRYGHYEFIVISIGLT 120
           YPLPRIDDLFDQLQ ATVFSKI LRSGYHQLRIKD DVPKTTFRSRYGHYEFIV+S GLT
Sbjct: 207 YPLPRIDDLFDQLQRATVFSKIDLRSGYHQLRIKDGDVPKTTFRSRYGHYEFIVMSFGLT 266

Query: 121 NAPAVFMDLMNRVFREFLDTFVIVYIDYILINSKTEAEHEEHLRMVLETLRANKLYAKFS 180
           NAP VFMDLMNRVFREFLDTF+IV+ID ILI SKTEAEHEEHLRMVL+TL  NKLYAKFS
Sbjct: 267 NAPTVFMDLMNRVFREFLDTFLIVFIDDILIYSKTEAEHEEHLRMVLQTLEDNKLYAKFS 326

Query: 181 KCEFWLKQVSFLGHVVSKPGIFVDPAKIEAVTSWP 216
           KCEFWLKQVSFLGHVVSK G+ VDPAKIEAVTSWP
Sbjct: 327 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWP 361

[Close]

BLAST of Cmc04g0094221 vs. ExPASy TrEMBL
Match: A0A5A7UMI8 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004880 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 5.1e-106
Identity = 193/215 (89.77%), Postives = 200/215 (93.02%), Query Frame = 0


Query: 1   MASVELKELKVQLQELLDKGFIWSSVSPWGAPVLFVKKKDGSMCLCIDYRKLNKVTVKNK 60
           MA  ELKELKVQLQELLDKGFI  SVSPWGAPVLFVKKKDGSMCLCIDYR+LNKVTVKN+
Sbjct: 127 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMCLCIDYRELNKVTVKNR 186

Query: 61  YPLPRIDDLFDQLQGATVFSKIGLRSGYHQLRIKDSDVPKTTFRSRYGHYEFIVISIGLT 120
           YPLPRIDDLFDQLQ ATVFSKI LRSGYHQLRIKD DVPKTTFRSRYGHYEFIV+S GLT
Sbjct: 187 YPLPRIDDLFDQLQRATVFSKIDLRSGYHQLRIKDGDVPKTTFRSRYGHYEFIVMSFGLT 246

Query: 121 NAPAVFMDLMNRVFREFLDTFVIVYIDYILINSKTEAEHEEHLRMVLETLRANKLYAKFS 180
           NAP VFMDLMNRVFREFLDTF+IV+ID ILI SKTEAEHEEHLRMVL+TL  NKLYAKFS
Sbjct: 247 NAPTVFMDLMNRVFREFLDTFLIVFIDDILIYSKTEAEHEEHLRMVLQTLEDNKLYAKFS 306

Query: 181 KCEFWLKQVSFLGHVVSKPGIFVDPAKIEAVTSWP 216
           KCEFWLKQVSFLGHVVSK G+ VDPAKIEAVTSWP
Sbjct: 307 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWP 341

[Close]

BLAST of Cmc04g0094221 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-07
Identity = 24/56 (42.86%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 162 HLRMVLETLRANKLYAKFSKCEFWLKQVSFLG--HVVSKPGIFVDPAKIEAVTSWP 216
           HL MVL+    ++ YA   KC F   Q+++LG  H++S  G+  DPAK+EA+  WP
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWP 58

The following BLAST results are available for this feature:

BLAST of Cmc04g0094221 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04315.1	4.7e-106	90.70	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0052348.1	6.1e-106	89.77	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK01903.1	6.1e-106	89.77	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0054669.1	1.0e-105	89.77	pol protein [Cucumis melo var. makuwa]	[more]
TYK08602.1	1.0e-105	89.77	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0094221 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	1.6e-40	38.32	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	2.7e-40	38.03	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q99315	1.8e-39	41.63	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.8e-39	41.63	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	4.4e-38	36.19	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc04g0094221 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BYT1	2.3e-106	90.70	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold52...	[more]
A0A5A7UAV9	3.0e-106	89.77	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]
A0A5D3BQD5	3.0e-106	89.77	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3CBC8	5.1e-106	89.77	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3734G00240 P...	[more]
A0A5A7UMI8	5.1e-106	89.77	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004880 PE...	[more]

BLAST of Cmc04g0094221 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.4e-07	42.86	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 37..195 e-value: 2.1E-21 score: 76.5
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 61..196 e-value: 6.1E-79 score: 266.2
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 3..121 e-value: 6.1E-79 score: 266.2
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 13..215
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 13..215
None	No IPR available	CDD	cd01647	RT_LTR	coord: 20..196 e-value: 1.19564E-87 score: 254.442
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 5..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0094221.1	Cmc04g0094221.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding