Cmc04g0094181 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0094181
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr04: 6669171 .. 6670166 (-)
RNA-Seq Expression	Cmc04g0094181
Synteny	Cmc04g0094181

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGCCAGCAAACTGCTTAACCAGGGTACTTGGAGTATCCTGGCTAGTGTGGTGGACACTAGAGAAGTTGACGTGTCCTTGTCATCAGAACCAGTGGTGAGGGACTATCTGGATGTTTTTCTCGAAGAACTTCTTAGATTACCTCCTCACAGAGAGATCAAATTTTCCACTGTGCTGGAACCTGGTACGGTTCCTATATCCATAGCTCCATACAGAATGGCCCCAGCAGAGTTGAAAGAGCTGAAAGTGCAGTTACAGGAGTTGCTTGACAAAGGCTTCATTCGACCGAGTGTGTCACCTTGGGGTGCACTGGTCCTGTTTGTTAAGAAGAAGGATGGGTCGATGTGCTTATGTATTGACTACAGAGAGTTGAATAGGGTAACTGTTAAGAATAAATATCCCTTGCCCAGGATCGATGATCTGTTTGACCAGTTACAGAGAGCTACGATGTTCTCTAAGATCGACCTCCGAACGGGATATAGTCAGTTGAGGATTAAGGATAGTGATATACCGAAAACAACCTTTCGTTCTAGATGTGGGCACTATGAGTTTATTGTTATGTCCTTTGGTTTGAAGAATGCGCCAGCAATGTTTATGGATTTGATGAACATAGTGTTTAGGGAGTTCATAGACACTTTTGTGATTGTGTTTATTAACGATATTTTGATATATTCCAAGACCGAGGCAGAACGTGAGGAGCATTTACACATGGTTCTAGAAACCCTTCGTGCTAATAAATTGTATGCAAAGTTCTCAAAATGTGAGTTTTGGTTGAAGTAGGTATATTTTCTAGGCCATGTGGTTTCTAAAGCTGGTGTTTCTATGAATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCTCAACCTTCCACAGTCAGTGAGCTTCGTAGCTTTCTAGGTTTAGCAGGTTATTACCGATGGTTTGTGGAGAACTTTTTCCGCCTAGCTACTCCTCTTACTCAGTTGACCAGAAAGGGAGCTCCTTTTGTTTAG

mRNA sequence

ATGAGGGCCAGCAAACTGCTTAACCAGGGTACTTGGAGTATCCTGGCTAGTGTGGTGGACACTAGAGAAGTTGACGTGTCCTTGTCATCAGAACCAGTGGTGAGGGACTATCTGGATGTTTTTCTCGAAGAACTTCTTAGATTACCTCCTCACAGAGAGATCAAATTTTCCACTGTGCTGGAACCTGGTACGGTTCCTATATCCATAGCTCCATACAGAATGGCCCCAGCAGAGTTGAAAGAGCTGAAAGTGCAGTTACAGGAGTTGCTTGACAAAGGCTTCATTCGACCGAGTGTGTCACCTTGGGGTGCACTGGTCCTGTTTGTTAAGAAGAAGGATGGGTCGATGTGCTTATGTATTGACTACAGAGAGTTGAATAGGGTAACTGTTAAGAATAAATATCCCTTGCCCAGGATCGATGATCTGTTTGACCAGTTACAGAGAGCTACGATGTTCTCTAAGATCGACCTCCGAACGGGATATAGTCAGTTGAGGATTAAGGATAGTGATATACCGAAAACAACCTTTCGTTCTAGATGTGGGCACTATGAGTTTATTGTTATGTCCTTTGGTTTGAAGAATGCGCCAGCAATGTTTATGGATTTGATGAACATAGTGTTTAGGGAGTTCATAGACACTTTTGTGATTGTGTTTATTAACGATATTTTGATATATTCCAAGACCGAGGCAGAACGTGAGGAGCATTTACACATGGTATATTTTCTAGGCCATGTGGTTTCTAAAGCTGGTGTTTCTATGAATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCTCAACCTTCCACAGTCAGTGAGCTTCGTAGCTTTCTAGGTTTAGCAGGTTATTACCGATGGTTTGTGGAGAACTTTTTCCGCCTAGCTACTCCTCTTACTCAGTTGACCAGAAAGGGAGCTCCTTTTGTTTAG

Coding sequence (CDS)

ATGAGGGCCAGCAAACTGCTTAACCAGGGTACTTGGAGTATCCTGGCTAGTGTGGTGGACACTAGAGAAGTTGACGTGTCCTTGTCATCAGAACCAGTGGTGAGGGACTATCTGGATGTTTTTCTCGAAGAACTTCTTAGATTACCTCCTCACAGAGAGATCAAATTTTCCACTGTGCTGGAACCTGGTACGGTTCCTATATCCATAGCTCCATACAGAATGGCCCCAGCAGAGTTGAAAGAGCTGAAAGTGCAGTTACAGGAGTTGCTTGACAAAGGCTTCATTCGACCGAGTGTGTCACCTTGGGGTGCACTGGTCCTGTTTGTTAAGAAGAAGGATGGGTCGATGTGCTTATGTATTGACTACAGAGAGTTGAATAGGGTAACTGTTAAGAATAAATATCCCTTGCCCAGGATCGATGATCTGTTTGACCAGTTACAGAGAGCTACGATGTTCTCTAAGATCGACCTCCGAACGGGATATAGTCAGTTGAGGATTAAGGATAGTGATATACCGAAAACAACCTTTCGTTCTAGATGTGGGCACTATGAGTTTATTGTTATGTCCTTTGGTTTGAAGAATGCGCCAGCAATGTTTATGGATTTGATGAACATAGTGTTTAGGGAGTTCATAGACACTTTTGTGATTGTGTTTATTAACGATATTTTGATATATTCCAAGACCGAGGCAGAACGTGAGGAGCATTTACACATGGTATATTTTCTAGGCCATGTGGTTTCTAAAGCTGGTGTTTCTATGAATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCTCAACCTTCCACAGTCAGTGAGCTTCGTAGCTTTCTAGGTTTAGCAGGTTATTACCGATGGTTTGTGGAGAACTTTTTCCGCCTAGCTACTCCTCTTACTCAGTTGACCAGAAAGGGAGCTCCTTTTGTTTAG

Protein sequence

MRASKLLNQGTWSILASVVDTREVDVSLSSEPVVRDYLDVFLEELLRLPPHREIKFSTVLEPGTVPISIAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGALVLFVKKKDGSMCLCIDYRELNRVTVKNKYPLPRIDDLFDQLQRATMFSKIDLRTGYSQLRIKDSDIPKTTFRSRCGHYEFIVMSFGLKNAPAMFMDLMNIVFREFIDTFVIVFINDILIYSKTEAEREEHLHMVYFLGHVVSKAGVSMNPAKIEAVTSWPQPSTVSELRSFLGLAGYYRWFVENFFRLATPLTQLTRKGAPFV

Homology

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BLAST of Cmc04g0094181 vs. NCBI nr
Match: KAA0032794.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30351.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 530.0 bits (1364), Expect = 1.3e-146
Identity = 267/308 (86.69%), Postives = 284/308 (92.21%), Query Frame = 0


Query: 1   MRASKLLNQGTWSILASVVDTREVDVSLSSEPVVRDYLDVFLEELLRLPPHREIKFSTVL 60
           MRA KLL+QGTWSIL+SVVDTREVDVSLSSEPVVRDY DVF EEL  LPPHREI+F+  L
Sbjct: 653 MRARKLLSQGTWSILSSVVDTREVDVSLSSEPVVRDYSDVFPEELPGLPPHREIEFAIEL 712

Query: 61  EPGTVPISIAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGALVLFVKKKDGSMCLCI 120
           EPGTVPIS APYRMAPAELKELKVQLQELLDKGFIRPSVSPWGA VLFVKKKDGSM LCI
Sbjct: 713 EPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 772

Query: 121 DYRELNRVTVKNKYPLPRIDDLFDQLQRATMFSKIDLRTGYSQLRIKDSDIPKTTFRSRC 180
           DYRELN+VTVKN+YPLPRIDDLFDQLQ AT+FSKIDLR+GY QLRIKD D+PKT FRSR 
Sbjct: 773 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRY 832

Query: 181 GHYEFIVMSFGLKNAPAMFMDLMNIVFREFIDTFVIVFINDILIYSKTEAEREEHLHMVY 240
           GHYEFIVMSFGL NAP +FMDLMN VFREF+DTFVIVFI+DILIYSKTEAE EEHL MV 
Sbjct: 833 GHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVS 892

Query: 241 FLGHVVSKAGVSMNPAKIEAVTSWPQPSTVSELRSFLGLAGYYRWFVENFFRLATPLTQL 300
           FLGHVVSKAGVS++PAKIEAVTSWP+PSTVSE+RSFLGL GYYR FVENF R+ATPLTQL
Sbjct: 893 FLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLIGYYRRFVENFSRIATPLTQL 952

Query: 301 TRKGAPFV 309
           TRKGAPFV
Sbjct: 953 TRKGAPFV 960

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BLAST of Cmc04g0094181 vs. NCBI nr
Match: KAA0040699.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 525.0 bits (1351), Expect = 4.3e-145
Identity = 265/308 (86.04%), Postives = 283/308 (91.88%), Query Frame = 0


Query: 1   MRASKLLNQGTWSILASVVDTREVDVSLSSEPVVRDYLDVFLEELLRLPPHREIKFSTVL 60
           +RASKLL+QGTW ILASVVDTREVDVSLSSEPVVRDY DVF EEL  L PHRE++F+  L
Sbjct: 658 IRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLSPHREVEFAIEL 717

Query: 61  EPGTVPISIAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGALVLFVKKKDGSMCLCI 120
           EPGTVPIS APYRMAPAELKELKVQLQELLDKGFIRPSVSPWGA VLFVKKKDGSM LCI
Sbjct: 718 EPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 777

Query: 121 DYRELNRVTVKNKYPLPRIDDLFDQLQRATMFSKIDLRTGYSQLRIKDSDIPKTTFRSRC 180
           DYRELN+VTVKN+YPLPRIDDLFDQLQ AT+FSKIDLR+GY QLRIKD D+PKT FRSR 
Sbjct: 778 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRY 837

Query: 181 GHYEFIVMSFGLKNAPAMFMDLMNIVFREFIDTFVIVFINDILIYSKTEAEREEHLHMVY 240
           GHYEFIVMSFGL NAPA+FMDLMN VFREF+DTFVIVFI+DILIYSKTEAE EEHL MV 
Sbjct: 838 GHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVS 897

Query: 241 FLGHVVSKAGVSMNPAKIEAVTSWPQPSTVSELRSFLGLAGYYRWFVENFFRLATPLTQL 300
           FLGHVVSKAGVS++PAKIEAVT W +PSTVSE+RSFLGLAGYYR FVENF R+ATPLTQL
Sbjct: 898 FLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQL 957

Query: 301 TRKGAPFV 309
           TRKGAPFV
Sbjct: 958 TRKGAPFV 965

[Close]

BLAST of Cmc04g0094181 vs. NCBI nr
Match: KAA0036553.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 519.2 bits (1336), Expect = 2.4e-143
Identity = 262/308 (85.06%), Postives = 280/308 (90.91%), Query Frame = 0


Query: 1   MRASKLLNQGTWSILASVVDTREVDVSLSSEPVVRDYLDVFLEELLRLPPHREIKFSTVL 60
           +RASKLL+QGTW ILASVVDTREVDVSLSSEPVVRDY DVF EEL  LPPHRE++F+  L
Sbjct: 394 IRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIEL 453

Query: 61  EPGTVPISIAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGALVLFVKKKDGSMCLCI 120
           EP TVPIS APYRMAPAELKELKVQLQELLDKGFIRPSVSPWGA VLFVKKKDGSM LCI
Sbjct: 454 EPDTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 513

Query: 121 DYRELNRVTVKNKYPLPRIDDLFDQLQRATMFSKIDLRTGYSQLRIKDSDIPKTTFRSRC 180
           DYRELN+VTVKN+YPLP IDDLFDQLQ AT+FSKIDLR+GY QLRIKD D+PKT FRSR 
Sbjct: 514 DYRELNKVTVKNRYPLPWIDDLFDQLQEATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRY 573

Query: 181 GHYEFIVMSFGLKNAPAMFMDLMNIVFREFIDTFVIVFINDILIYSKTEAEREEHLHMVY 240
           GHYEFIVMSFGL NAPA+FMDLMN VFREF+DTFVIVFI+DILIYSKTEAE EEHL +V 
Sbjct: 574 GHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVS 633

Query: 241 FLGHVVSKAGVSMNPAKIEAVTSWPQPSTVSELRSFLGLAGYYRWFVENFFRLATPLTQL 300
           FLGHVVSKAGVS++PAKIEAVT W +PSTVSE RSFLGLAGYYR FVENF  +ATPLTQL
Sbjct: 634 FLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEFRSFLGLAGYYRRFVENFSHIATPLTQL 693

Query: 301 TRKGAPFV 309
           TRKGAPFV
Sbjct: 694 TRKGAPFV 701

[Close]

BLAST of Cmc04g0094181 vs. NCBI nr
Match: TYK29834.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 517.3 bits (1331), Expect = 9.0e-143
Identity = 267/331 (80.66%), Postives = 284/331 (85.80%), Query Frame = 0


Query: 1   MRASKLLNQGTWSILASVVDTREVDVSLSSEPVVRDYLDVFLEELLRLPPHREIKFSTVL 60
           MRASKLL+QGTWSILASVVDTREVDVSLSSEPVVRDY DVF EEL RL PHREI+F+  L
Sbjct: 54  MRASKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFSEELPRLSPHREIEFAIEL 113

Query: 61  EPGTVPISIAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGALVLFVKKKDGSMCLCI 120
           EPGTVPIS APYRMAPAELKELKVQLQELLDKGFIRPSVSPWGA VLFVKKKDGSM LCI
Sbjct: 114 EPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 173

Query: 121 DYRELNRVTVKNKYPLPRIDDLFDQLQRATMFSKIDLRTGYSQLRIKDSDIPKTTFRSRC 180
           DYRELN+VTVKNKY LPRID+LFDQLQ AT+FSKIDLR+GY QLRIKDSD+PKT FRSR 
Sbjct: 174 DYRELNKVTVKNKYTLPRIDNLFDQLQGATVFSKIDLRSGYHQLRIKDSDVPKTAFRSRY 233

Query: 181 GHYEFIVMSFGLKNAPAMFMDLMNIVFREFIDTFVIVFINDILIYSKTEAEREEHLHMVY 240
           GHYEFIVMSFGL NAPA+FMDLMN VFREF+DTFVIVF +DILIYSK EAE E+HL MV 
Sbjct: 234 GHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFYDDILIYSKIEAEHEKHLRMVL 293

Query: 241 -----------------------FLGHVVSKAGVSMNPAKIEAVTSWPQPSTVSELRSFL 300
                                  FLGHVVSKAGVS++PAKIEAVTSWP+PSTVSE+RSFL
Sbjct: 294 QTLRANKLYAKFSKCEFWLKQISFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFL 353

Query: 301 GLAGYYRWFVENFFRLATPLTQLTRKGAPFV 309
           GL GYYRWFVENF R+ATPLTQLTRKG PFV
Sbjct: 354 GLIGYYRWFVENFSRIATPLTQLTRKGTPFV 384

[Close]

BLAST of Cmc04g0094181 vs. NCBI nr
Match: KAA0062823.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 516.9 bits (1330), Expect = 1.2e-142
Identity = 262/308 (85.06%), Postives = 280/308 (90.91%), Query Frame = 0


Query: 1   MRASKLLNQGTWSILASVVDTREVDVSLSSEPVVRDYLDVFLEELLRLPPHREIKFSTVL 60
           MRASKLL+QGTWSILAS+VDTREVD+SLSSEPVVRDYLDVF EEL  LPPHREI+F   L
Sbjct: 296 MRASKLLSQGTWSILASLVDTREVDISLSSEPVVRDYLDVFPEELPGLPPHREIEFVIKL 355

Query: 61  EPGTVPISIAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGALVLFVKKKDGSMCLCI 120
           EPGTVPI  APYRMA  ELKELKVQLQELLDKGFIRPSVSPWGA VLFVKKKDGSM LCI
Sbjct: 356 EPGTVPIFRAPYRMATVELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 415

Query: 121 DYRELNRVTVKNKYPLPRIDDLFDQLQRATMFSKIDLRTGYSQLRIKDSDIPKTTFRSRC 180
           DYRELN+VTVKN+YPLPRIDDLFDQLQ AT+FSKIDLR+GY QLRIKD D+PKTTF SR 
Sbjct: 416 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTTFCSRY 475

Query: 181 GHYEFIVMSFGLKNAPAMFMDLMNIVFREFIDTFVIVFINDILIYSKTEAEREEHLHMVY 240
           GHYEFIVMSFGL NAPA+FMDL+N VFREF+DTFVIVFI+DILIYSKTEAE EEHL    
Sbjct: 476 GHYEFIVMSFGLTNAPAVFMDLINRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR--- 535

Query: 241 FLGHVVSKAGVSMNPAKIEAVTSWPQPSTVSELRSFLGLAGYYRWFVENFFRLATPLTQL 300
              HVVSKAGVS++PAKIEAVTSWP+PSTVSE+RSFLGLAGYYRWFVENF R+ATPLTQL
Sbjct: 536 ---HVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYRWFVENFSRIATPLTQL 595

Query: 301 TRKGAPFV 309
           TRKGAPFV
Sbjct: 596 TRKGAPFV 597

[Close]

BLAST of Cmc04g0094181 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.0e-45
Identity = 94/266 (35.34%), Postives = 153/266 (57.52%), Query Frame = 0


Query: 66  PISIAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGALVLFV-KKKDGSMC----LCI 125
           PI    Y +A     E++ Q+QE+L++G IR S SP+ +    V KK D S      + I
Sbjct: 206 PIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVI 265

Query: 126 DYRELNRVTVKNKYPLPRIDDLFDQLQRATMFSKIDLRTGYSQLRIKDSDIPKTTFRSRC 185
           DYR+LN +T+ ++YP+P +D++  +L +   F+ IDL  G+ Q+ + +  I KT F ++ 
Sbjct: 266 DYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKS 325

Query: 186 GHYEFIVMSFGLKNAPAMFMDLMNIVFREFIDTFVIVFINDILIYSKTEAEREEHLHMVY 245
           GHYE++ M FGL+NAPA F   MN + R  ++   +V+++DI+I+S +  E    + +V+
Sbjct: 326 GHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVF 385

Query: 246 -----------------------FLGHVVSKAGVSMNPAKIEAVTSWPQPSTVSELRSFL 304
                                  FLGH+V+  G+  NP K++A+ S+P P+   E+R+FL
Sbjct: 386 TKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFL 445

[Close]

BLAST of Cmc04g0094181 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.5e-44
Identity = 93/260 (35.77%), Postives = 153/260 (58.85%), Query Frame = 0


Query: 72  YRMAPAELKELKVQLQELLDKGFIRPSVSPWGALVLFV-KKKDGS----MCLCIDYRELN 131
           Y    A  +E++ Q+Q++L++G IR S SP+ + +  V KK+D S      + IDYR+LN
Sbjct: 213 YSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLN 272

Query: 132 RVTVKNKYPLPRIDDLFDQLQRATMFSKIDLRTGYSQLRIKDSDIPKTTFRSRCGHYEFI 191
            +TV +++P+P +D++  +L R   F+ IDL  G+ Q+ +    + KT F ++ GHYE++
Sbjct: 273 EITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYL 332

Query: 192 VMSFGLKNAPAMFMDLMNIVFREFIDTFVIVFINDILIYSKTEAEREEHLHMVY------ 251
            M FGLKNAPA F   MN + R  ++   +V+++DI+++S +  E  + L +V+      
Sbjct: 333 RMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKA 392

Query: 252 -----------------FLGHVVSKAGVSMNPAKIEAVTSWPQPSTVSELRSFLGLAGYY 304
                            FLGHV++  G+  NP KIEA+  +P P+   E+++FLGL GYY
Sbjct: 393 NLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYY 452

[Close]

BLAST of Cmc04g0094181 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.5e-42
Identity = 89/250 (35.60%), Postives = 146/250 (58.40%), Query Frame = 0


Query: 81  ELKVQLQELLDKGFIRPSVSPWGALVLFVKKK-----DGSMCLCIDYRELNRVTVKNKYP 140
           E++ Q+ ELL  G IRPS SP+ + +  V KK     +    + +D++ LN VT+ + YP
Sbjct: 138 EVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYP 197

Query: 141 LPRIDDLFDQLQRATMFSKIDLRTGYSQLRIKDSDIPKTTFRSRCGHYEFIVMSFGLKNA 200
           +P I+     L  A  F+ +DL +G+ Q+ +K+SDIPKT F +  G YEF+ + FGLKNA
Sbjct: 198 IPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNA 257

Query: 201 PAMFMDLMNIVFREFIDTFVIVFINDILIYSKTEAEREEHLHMVY--------------- 260
           PA+F  +++ + RE I     V+I+DI+++S+      ++L +V                
Sbjct: 258 PAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKS 317

Query: 261 --------FLGHVVSKAGVSMNPAKIEAVTSWPQPSTVSELRSFLGLAGYYRWFVENFFR 303
                   FLG++V+  G+  +P K+ A++  P P++V EL+ FLG+  YYR F++++ +
Sbjct: 318 HFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAK 377

[Close]

BLAST of Cmc04g0094181 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 174.1 bits (440), Expect = 2.5e-42
Identity = 109/330 (33.03%), Postives = 170/330 (51.52%), Query Frame = 0


Query: 3   ASKLLNQGTWSILASVVDTREVDVSLSSEPVVRDYLDVFLEELLR------LPP------ 62
           AS L   G +S + S + + E + +  S       L V+L++  R      LPP      
Sbjct: 521 ASILEEDGKYSNVVSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRNDLPPRPADIN 580

Query: 63  HREIKFSTVLEPGTVPISIAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGALVLFVK 122
           +  +K    ++PG     + PY +     +E+   +Q+LLD  FI PS SP  + V+ V 
Sbjct: 581 NIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVP 640

Query: 123 KKDGSMCLCIDYRELNRVTVKNKYPLPRIDDLFDQLQRATMFSKIDLRTGYSQLRIKDSD 182
           KKDG+  LC+DYR LN+ T+ + +PLPRID+L  ++  A +F+ +DL +GY Q+ ++  D
Sbjct: 641 KKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKD 700

Query: 183 IPKTTFRSRCGHYEFIVMSFGLKNAPAMFMDLMNIVFREFIDTFVIVFINDILIYSKTEA 242
             KT F +  G YE+ VM FGL NAP+ F   M   FR+    FV V+++DILI+S++  
Sbjct: 701 RYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPE 760

Query: 243 EREEHLHMVY-----------------------FLGHVVSKAGVSMNPAKIEAVTSWPQP 298
           E  +HL  V                        FLG+ +    ++    K  A+  +P P
Sbjct: 761 EHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTP 820

[Close]

BLAST of Cmc04g0094181 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 174.1 bits (440), Expect = 2.5e-42
Identity = 109/330 (33.03%), Postives = 170/330 (51.52%), Query Frame = 0


Query: 3   ASKLLNQGTWSILASVVDTREVDVSLSSEPVVRDYLDVFLEELLR------LPP------ 62
           AS L   G +S + S + + E + +  S       L V+L++  R      LPP      
Sbjct: 547 ASILEEDGKYSNVVSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRNDLPPRPADIN 606

Query: 63  HREIKFSTVLEPGTVPISIAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGALVLFVK 122
           +  +K    ++PG     + PY +     +E+   +Q+LLD  FI PS SP  + V+ V 
Sbjct: 607 NIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVP 666

Query: 123 KKDGSMCLCIDYRELNRVTVKNKYPLPRIDDLFDQLQRATMFSKIDLRTGYSQLRIKDSD 182
           KKDG+  LC+DYR LN+ T+ + +PLPRID+L  ++  A +F+ +DL +GY Q+ ++  D
Sbjct: 667 KKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKD 726

Query: 183 IPKTTFRSRCGHYEFIVMSFGLKNAPAMFMDLMNIVFREFIDTFVIVFINDILIYSKTEA 242
             KT F +  G YE+ VM FGL NAP+ F   M   FR+    FV V+++DILI+S++  
Sbjct: 727 RYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPE 786

Query: 243 EREEHLHMVY-----------------------FLGHVVSKAGVSMNPAKIEAVTSWPQP 298
           E  +HL  V                        FLG+ +    ++    K  A+  +P P
Sbjct: 787 EHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTP 846

[Close]

BLAST of Cmc04g0094181 vs. ExPASy TrEMBL
Match: A0A5D3E456 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold575G00150 PE=4 SV=1)

HSP 1 Score: 530.0 bits (1364), Expect = 6.5e-147
Identity = 267/308 (86.69%), Postives = 284/308 (92.21%), Query Frame = 0


Query: 1   MRASKLLNQGTWSILASVVDTREVDVSLSSEPVVRDYLDVFLEELLRLPPHREIKFSTVL 60
           MRA KLL+QGTWSIL+SVVDTREVDVSLSSEPVVRDY DVF EEL  LPPHREI+F+  L
Sbjct: 653 MRARKLLSQGTWSILSSVVDTREVDVSLSSEPVVRDYSDVFPEELPGLPPHREIEFAIEL 712

Query: 61  EPGTVPISIAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGALVLFVKKKDGSMCLCI 120
           EPGTVPIS APYRMAPAELKELKVQLQELLDKGFIRPSVSPWGA VLFVKKKDGSM LCI
Sbjct: 713 EPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 772

Query: 121 DYRELNRVTVKNKYPLPRIDDLFDQLQRATMFSKIDLRTGYSQLRIKDSDIPKTTFRSRC 180
           DYRELN+VTVKN+YPLPRIDDLFDQLQ AT+FSKIDLR+GY QLRIKD D+PKT FRSR 
Sbjct: 773 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRY 832

Query: 181 GHYEFIVMSFGLKNAPAMFMDLMNIVFREFIDTFVIVFINDILIYSKTEAEREEHLHMVY 240
           GHYEFIVMSFGL NAP +FMDLMN VFREF+DTFVIVFI+DILIYSKTEAE EEHL MV 
Sbjct: 833 GHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVS 892

Query: 241 FLGHVVSKAGVSMNPAKIEAVTSWPQPSTVSELRSFLGLAGYYRWFVENFFRLATPLTQL 300
           FLGHVVSKAGVS++PAKIEAVTSWP+PSTVSE+RSFLGL GYYR FVENF R+ATPLTQL
Sbjct: 893 FLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLIGYYRRFVENFSRIATPLTQL 952

Query: 301 TRKGAPFV 309
           TRKGAPFV
Sbjct: 953 TRKGAPFV 960

[Close]

BLAST of Cmc04g0094181 vs. ExPASy TrEMBL
Match: A0A5A7THF3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold529G00140 PE=4 SV=1)

HSP 1 Score: 525.0 bits (1351), Expect = 2.1e-145
Identity = 265/308 (86.04%), Postives = 283/308 (91.88%), Query Frame = 0


Query: 1   MRASKLLNQGTWSILASVVDTREVDVSLSSEPVVRDYLDVFLEELLRLPPHREIKFSTVL 60
           +RASKLL+QGTW ILASVVDTREVDVSLSSEPVVRDY DVF EEL  L PHRE++F+  L
Sbjct: 658 IRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLSPHREVEFAIEL 717

Query: 61  EPGTVPISIAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGALVLFVKKKDGSMCLCI 120
           EPGTVPIS APYRMAPAELKELKVQLQELLDKGFIRPSVSPWGA VLFVKKKDGSM LCI
Sbjct: 718 EPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 777

Query: 121 DYRELNRVTVKNKYPLPRIDDLFDQLQRATMFSKIDLRTGYSQLRIKDSDIPKTTFRSRC 180
           DYRELN+VTVKN+YPLPRIDDLFDQLQ AT+FSKIDLR+GY QLRIKD D+PKT FRSR 
Sbjct: 778 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRY 837

Query: 181 GHYEFIVMSFGLKNAPAMFMDLMNIVFREFIDTFVIVFINDILIYSKTEAEREEHLHMVY 240
           GHYEFIVMSFGL NAPA+FMDLMN VFREF+DTFVIVFI+DILIYSKTEAE EEHL MV 
Sbjct: 838 GHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVS 897

Query: 241 FLGHVVSKAGVSMNPAKIEAVTSWPQPSTVSELRSFLGLAGYYRWFVENFFRLATPLTQL 300
           FLGHVVSKAGVS++PAKIEAVT W +PSTVSE+RSFLGLAGYYR FVENF R+ATPLTQL
Sbjct: 898 FLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQL 957

Query: 301 TRKGAPFV 309
           TRKGAPFV
Sbjct: 958 TRKGAPFV 965

[Close]

BLAST of Cmc04g0094181 vs. ExPASy TrEMBL
Match: A0A5A7T0Y9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00570 PE=4 SV=1)

HSP 1 Score: 519.2 bits (1336), Expect = 1.1e-143
Identity = 262/308 (85.06%), Postives = 280/308 (90.91%), Query Frame = 0


Query: 1   MRASKLLNQGTWSILASVVDTREVDVSLSSEPVVRDYLDVFLEELLRLPPHREIKFSTVL 60
           +RASKLL+QGTW ILASVVDTREVDVSLSSEPVVRDY DVF EEL  LPPHRE++F+  L
Sbjct: 394 IRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIEL 453

Query: 61  EPGTVPISIAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGALVLFVKKKDGSMCLCI 120
           EP TVPIS APYRMAPAELKELKVQLQELLDKGFIRPSVSPWGA VLFVKKKDGSM LCI
Sbjct: 454 EPDTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 513

Query: 121 DYRELNRVTVKNKYPLPRIDDLFDQLQRATMFSKIDLRTGYSQLRIKDSDIPKTTFRSRC 180
           DYRELN+VTVKN+YPLP IDDLFDQLQ AT+FSKIDLR+GY QLRIKD D+PKT FRSR 
Sbjct: 514 DYRELNKVTVKNRYPLPWIDDLFDQLQEATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRY 573

Query: 181 GHYEFIVMSFGLKNAPAMFMDLMNIVFREFIDTFVIVFINDILIYSKTEAEREEHLHMVY 240
           GHYEFIVMSFGL NAPA+FMDLMN VFREF+DTFVIVFI+DILIYSKTEAE EEHL +V 
Sbjct: 574 GHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVS 633

Query: 241 FLGHVVSKAGVSMNPAKIEAVTSWPQPSTVSELRSFLGLAGYYRWFVENFFRLATPLTQL 300
           FLGHVVSKAGVS++PAKIEAVT W +PSTVSE RSFLGLAGYYR FVENF  +ATPLTQL
Sbjct: 634 FLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEFRSFLGLAGYYRRFVENFSHIATPLTQL 693

Query: 301 TRKGAPFV 309
           TRKGAPFV
Sbjct: 694 TRKGAPFV 701

[Close]

BLAST of Cmc04g0094181 vs. ExPASy TrEMBL
Match: A0A5D3E1T8 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00660 PE=4 SV=1)

HSP 1 Score: 517.3 bits (1331), Expect = 4.4e-143
Identity = 267/331 (80.66%), Postives = 284/331 (85.80%), Query Frame = 0


Query: 1   MRASKLLNQGTWSILASVVDTREVDVSLSSEPVVRDYLDVFLEELLRLPPHREIKFSTVL 60
           MRASKLL+QGTWSILASVVDTREVDVSLSSEPVVRDY DVF EEL RL PHREI+F+  L
Sbjct: 54  MRASKLLSQGTWSILASVVDTREVDVSLSSEPVVRDYPDVFSEELPRLSPHREIEFAIEL 113

Query: 61  EPGTVPISIAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGALVLFVKKKDGSMCLCI 120
           EPGTVPIS APYRMAPAELKELKVQLQELLDKGFIRPSVSPWGA VLFVKKKDGSM LCI
Sbjct: 114 EPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 173

Query: 121 DYRELNRVTVKNKYPLPRIDDLFDQLQRATMFSKIDLRTGYSQLRIKDSDIPKTTFRSRC 180
           DYRELN+VTVKNKY LPRID+LFDQLQ AT+FSKIDLR+GY QLRIKDSD+PKT FRSR 
Sbjct: 174 DYRELNKVTVKNKYTLPRIDNLFDQLQGATVFSKIDLRSGYHQLRIKDSDVPKTAFRSRY 233

Query: 181 GHYEFIVMSFGLKNAPAMFMDLMNIVFREFIDTFVIVFINDILIYSKTEAEREEHLHMVY 240
           GHYEFIVMSFGL NAPA+FMDLMN VFREF+DTFVIVF +DILIYSK EAE E+HL MV 
Sbjct: 234 GHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFYDDILIYSKIEAEHEKHLRMVL 293

Query: 241 -----------------------FLGHVVSKAGVSMNPAKIEAVTSWPQPSTVSELRSFL 300
                                  FLGHVVSKAGVS++PAKIEAVTSWP+PSTVSE+RSFL
Sbjct: 294 QTLRANKLYAKFSKCEFWLKQISFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFL 353

Query: 301 GLAGYYRWFVENFFRLATPLTQLTRKGAPFV 309
           GL GYYRWFVENF R+ATPLTQLTRKG PFV
Sbjct: 354 GLIGYYRWFVENFSRIATPLTQLTRKGTPFV 384

[Close]

BLAST of Cmc04g0094181 vs. ExPASy TrEMBL
Match: A0A5A7V461 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold357G00440 PE=4 SV=1)

HSP 1 Score: 516.9 bits (1330), Expect = 5.7e-143
Identity = 262/308 (85.06%), Postives = 280/308 (90.91%), Query Frame = 0


Query: 1   MRASKLLNQGTWSILASVVDTREVDVSLSSEPVVRDYLDVFLEELLRLPPHREIKFSTVL 60
           MRASKLL+QGTWSILAS+VDTREVD+SLSSEPVVRDYLDVF EEL  LPPHREI+F   L
Sbjct: 296 MRASKLLSQGTWSILASLVDTREVDISLSSEPVVRDYLDVFPEELPGLPPHREIEFVIKL 355

Query: 61  EPGTVPISIAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGALVLFVKKKDGSMCLCI 120
           EPGTVPI  APYRMA  ELKELKVQLQELLDKGFIRPSVSPWGA VLFVKKKDGSM LCI
Sbjct: 356 EPGTVPIFRAPYRMATVELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 415

Query: 121 DYRELNRVTVKNKYPLPRIDDLFDQLQRATMFSKIDLRTGYSQLRIKDSDIPKTTFRSRC 180
           DYRELN+VTVKN+YPLPRIDDLFDQLQ AT+FSKIDLR+GY QLRIKD D+PKTTF SR 
Sbjct: 416 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTTFCSRY 475

Query: 181 GHYEFIVMSFGLKNAPAMFMDLMNIVFREFIDTFVIVFINDILIYSKTEAEREEHLHMVY 240
           GHYEFIVMSFGL NAPA+FMDL+N VFREF+DTFVIVFI+DILIYSKTEAE EEHL    
Sbjct: 476 GHYEFIVMSFGLTNAPAVFMDLINRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR--- 535

Query: 241 FLGHVVSKAGVSMNPAKIEAVTSWPQPSTVSELRSFLGLAGYYRWFVENFFRLATPLTQL 300
              HVVSKAGVS++PAKIEAVTSWP+PSTVSE+RSFLGLAGYYRWFVENF R+ATPLTQL
Sbjct: 536 ---HVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYRWFVENFSRIATPLTQL 595

Query: 301 TRKGAPFV 309
           TRKGAPFV
Sbjct: 596 TRKGAPFV 597

[Close]

BLAST of Cmc04g0094181 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 79.7 bits (195), Expect = 4.5e-15
Identity = 34/69 (49.28%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 239 VYFLG--HVVSKAGVSMNPAKIEAVTSWPQPSTVSELRSFLGLAGYYRWFVENFFRLATP 298
           + +LG  H++S  GVS +PAK+EA+  WP+P   +ELR FLGL GYYR FV+N+ ++  P
Sbjct: 30  IAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRP 89

Query: 299 LTQLTRKGA 306
           LT+L +K +
Sbjct: 90  LTELLKKNS 98

The following BLAST results are available for this feature:

BLAST of Cmc04g0094181 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032794.1	1.3e-146	86.69	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30351.1 ty3-gyp...	[more]
KAA0040699.1	4.3e-145	86.04	pol protein [Cucumis melo var. makuwa]	[more]
KAA0036553.1	2.4e-143	85.06	pol protein [Cucumis melo var. makuwa]	[more]
TYK29834.1	9.0e-143	80.66	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062823.1	1.2e-142	85.06	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0094181 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	4.0e-45	35.34	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	1.5e-44	35.77	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	2.5e-42	35.60	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q99315	2.5e-42	33.03	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	2.5e-42	33.03	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc04g0094181 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E456	6.5e-147	86.69	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold57...	[more]
A0A5A7THF3	2.1e-145	86.04	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold52...	[more]
A0A5A7T0Y9	1.1e-143	85.06	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19...	[more]
A0A5D3E1T8	4.4e-143	80.66	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V461	5.7e-143	85.06	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35...	[more]

BLAST of Cmc04g0094181 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	4.5e-15	49.28	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 261..308 e-value: 5.7E-17 score: 63.5
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 134..260 e-value: 4.1E-71 score: 240.7
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 55..194 e-value: 4.1E-71 score: 240.7
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 66..239 coord: 239..302
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 239..302
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 66..239
None	No IPR available	CDD	cd01647	RT_LTR	coord: 93..257 e-value: 1.53321E-71 score: 217.078
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 110..262 e-value: 2.4E-18 score: 66.5
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 33..307

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0094181.1	Cmc04g0094181.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding