Cmc04g0094151 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0094151
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr04: 6649844 .. 6650341 (+)
RNA-Seq Expression	Cmc04g0094151
Synteny	Cmc04g0094151

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGGCTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAGGACTATATGATAGAACATGAAATCCAATTCCAACTCTCAGCATCTGATACACCTCAACAAAATGATGTATCAGAAAGGAGAAATAGAACCTTGTTAGACATGGTTAGTTCAATGATGAGTTATACTCAATTTCCTAGCTCGTCTTGGGGGTATGCTGTAGAGGCTGCAATTCATATCTTGAACAATGTTCCCTCGAAGAGTGTTTCTGAAACACCTTTTGAGTTATGGAGAGGACGTAAACCTAGTTTAAGTCATTTCAGAATTTGGGGTTGTCCAACACACGTGTTAGTGACAACTCCTAAGAAGTTAGAACCTCGTTGTATCGACAAATGCTTCTCTCTTGGAAGAAGACCACATGAGAGATTATAA

mRNA sequence

ATGGAGCATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGGCTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAGGACTATATGATAGAACATGAAATCCAATTCCAACTCTCAGCATCTGATACACCTCAACAAAATGATGTATCAGAAAGGAGAAATAGAACCTTGTTAGACATGGTTAGTTCAATGATGAGTTATACTCAATTTCCTAGCTCGTCTTGGGGGTATGCTGTAGAGGCTGCAATTCATATCTTGAACAATGTTCCCTCGAAGAGTGTTTCTGAAACACCTTTTGAGTTATGGAGAGGACGTAAACCTAGTTTAAGTCATTTCAGAATTTGGGGTTGTCCAACACACGTGTTAGTGACAACTCCTAAGAAGTTAGAACCTCGTTGTATCGACAAATGCTTCTCTCTTGGAAGAAGACCACATGAGAGATTATAA

Coding sequence (CDS)

ATGGAGCATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGGCTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAGGACTATATGATAGAACATGAAATCCAATTCCAACTCTCAGCATCTGATACACCTCAACAAAATGATGTATCAGAAAGGAGAAATAGAACCTTGTTAGACATGGTTAGTTCAATGATGAGTTATACTCAATTTCCTAGCTCGTCTTGGGGGTATGCTGTAGAGGCTGCAATTCATATCTTGAACAATGTTCCCTCGAAGAGTGTTTCTGAAACACCTTTTGAGTTATGGAGAGGACGTAAACCTAGTTTAAGTCATTTCAGAATTTGGGGTTGTCCAACACACGTGTTAGTGACAACTCCTAAGAAGTTAGAACCTCGTTGTATCGACAAATGCTTCTCTCTTGGAAGAAGACCACATGAGAGATTATAA

Protein sequence

MEHKSEALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHEIQFQLSASDTPQQNDVSERRNRTLLDMVSSMMSYTQFPSSSWGYAVEAAIHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPTHVLVTTPKKLEPRCIDKCFSLGRRPHERL

Homology

[Close]

BLAST of Cmc04g0094151 vs. NCBI nr
Match: KAA0048708.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 273.9 bits (699), Expect = 9.3e-70
Identity = 135/149 (90.60%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 1   MEHKSEALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHEIQFQLSASDT 60
           MEHKSEALEKFKEYKAEVENLLSKKIKILRS+RGGEYMDLRFQDYMIEHEIQ QLSA  T
Sbjct: 36  MEHKSEALEKFKEYKAEVENLLSKKIKILRSNRGGEYMDLRFQDYMIEHEIQSQLSAPGT 95

Query: 61  PQQNDVSERRNRTLLDMVSSMMSYTQFPSSSWGYAVEAAIHILNNVPSKSVSETPFELWR 120
           PQQN VSE+RNRTLLDMV SMMSYTQ PSS WGYAVE A+HILNNVPSKSVSETPFELWR
Sbjct: 96  PQQNGVSEKRNRTLLDMVRSMMSYTQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWR 155

Query: 121 GRKPSLSHFRIWGCPTHVLVTTPKKLEPR 150
           GRKPSL HFRIWGCP HVLVT PKKLEPR
Sbjct: 156 GRKPSLIHFRIWGCPAHVLVTNPKKLEPR 184

[Close]

BLAST of Cmc04g0094151 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 273.1 bits (697), Expect = 1.6e-69
Identity = 135/149 (90.60%), Postives = 136/149 (91.28%), Query Frame = 0


Query: 1   MEHKSEALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHEIQFQLSASDT 60
           MEHKSEALEKFKEYK EVENLLSKKIKILRSDRGGEYMDLRFQDYMIEH IQ QLSA  T
Sbjct: 445 MEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGT 504

Query: 61  PQQNDVSERRNRTLLDMVSSMMSYTQFPSSSWGYAVEAAIHILNNVPSKSVSETPFELWR 120
           PQQN VSERRNRTLLDMV SMMSY Q PSS WGYAVE A+HILNNVPSKSVSETPFELWR
Sbjct: 505 PQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWR 564

Query: 121 GRKPSLSHFRIWGCPTHVLVTTPKKLEPR 150
           GRKPSLSHFRIWGCP HVLVT PKKLEPR
Sbjct: 565 GRKPSLSHFRIWGCPAHVLVTNPKKLEPR 593

[Close]

BLAST of Cmc04g0094151 vs. NCBI nr
Match: TYK04171.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 273.1 bits (697), Expect = 1.6e-69
Identity = 137/158 (86.71%), Postives = 139/158 (87.97%), Query Frame = 0


Query: 1   MEHKSEALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHEIQFQLSASDT 60
           MEHKSEALEKFKEYK EVENLLSKKIKILRSDRGGEYMDLRFQDYMIEH IQ QLSA  T
Sbjct: 319 MEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGT 378

Query: 61  PQQNDVSERRNRTLLDMVSSMMSYTQFPSSSWGYAVEAAIHILNNVPSKSVSETPFELWR 120
           PQQN VSERRNRTLLDMV SMMSY Q PSS WGYAVE A+HILNNVPSKSVSETPFELWR
Sbjct: 379 PQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWR 438

Query: 121 GRKPSLSHFRIWGCPTHVLVTTPKKLEPRCIDKCFSLG 159
           GRKPSLSHFRIWGCP HVLVT PKKLEP C   C  +G
Sbjct: 439 GRKPSLSHFRIWGCPAHVLVTNPKKLEP-CSRLCQFVG 475

[Close]

BLAST of Cmc04g0094151 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 273.1 bits (697), Expect = 1.6e-69
Identity = 135/149 (90.60%), Postives = 136/149 (91.28%), Query Frame = 0


Query: 1   MEHKSEALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHEIQFQLSASDT 60
           MEHKSEALEKFKEYK EVENLLSKKIKILRSDRGGEYMDLRFQDYMIEH IQ QLSA  T
Sbjct: 319 MEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGT 378

Query: 61  PQQNDVSERRNRTLLDMVSSMMSYTQFPSSSWGYAVEAAIHILNNVPSKSVSETPFELWR 120
           PQQN VSERRNRTLLDMV SMMSY Q PSS WGYAVE A+HILNNVPSKSVSETPFELWR
Sbjct: 379 PQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWR 438

Query: 121 GRKPSLSHFRIWGCPTHVLVTTPKKLEPR 150
           GRKPSLSHFRIWGCP HVLVT PKKLEPR
Sbjct: 439 GRKPSLSHFRIWGCPAHVLVTNPKKLEPR 467

[Close]

BLAST of Cmc04g0094151 vs. NCBI nr
Match: TYK02840.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 273.1 bits (697), Expect = 1.6e-69
Identity = 135/149 (90.60%), Postives = 136/149 (91.28%), Query Frame = 0


Query: 1   MEHKSEALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHEIQFQLSASDT 60
           MEHKSEALEKFKEYK EVENLLSKKIKILRSDRGGEYMDLRFQDYMIEH IQ QLSA  T
Sbjct: 319 MEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGT 378

Query: 61  PQQNDVSERRNRTLLDMVSSMMSYTQFPSSSWGYAVEAAIHILNNVPSKSVSETPFELWR 120
           PQQN VSERRNRTLLDMV SMMSY Q PSS WGYAVE A+HILNNVPSKSVSETPFELWR
Sbjct: 379 PQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWR 438

Query: 121 GRKPSLSHFRIWGCPTHVLVTTPKKLEPR 150
           GRKPSLSHFRIWGCP HVLVT PKKLEPR
Sbjct: 439 GRKPSLSHFRIWGCPAHVLVTNPKKLEPR 467

[Close]

BLAST of Cmc04g0094151 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 8.9e-23
Identity = 56/162 (34.57%), Postives = 91/162 (56.17%), Query Frame = 0


Query: 1   MEHKSEALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHEIQFQLSASDT 60
           ++ K +  + F+++ A VE    +K+K LRSD GGEY    F++Y   H I+ + +   T
Sbjct: 519 LKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGT 578

Query: 61  PQQNDVSERRNRTLLDMVSSMMSYTQFPSSSWGYAVEAAIHILNNVPSKSVS-ETPFELW 120
           PQ N V+ER NRT+++ V SM+   + P S WG AV+ A +++N  PS  ++ E P  +W
Sbjct: 579 PQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVW 638

Query: 121 RGRKPSLSHFRIWGCPTHVLVTTPKKLEPRCIDK---CFSLG 159
             ++ S SH +++GC        PK+   +  DK   C  +G
Sbjct: 639 TNKEVSYSHLKVFGC--RAFAHVPKEQRTKLDDKSIPCIFIG 678

[Close]

BLAST of Cmc04g0094151 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 96.3 bits (238), Expect = 3.5e-19
Identity = 50/158 (31.65%), Postives = 89/158 (56.33%), Query Frame = 0


Query: 1   MEHKSEALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHEIQFQLSASDT 60
           +++KS+    F+++ A+ E   + K+  L  D G EY+    + + ++  I + L+   T
Sbjct: 519 IKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHT 578

Query: 61  PQQNDVSERRNRTLLDMVSSMMSYTQFPSSSWGYAVEAAIHILNNVPSKSV---SETPFE 120
           PQ N VSER  RT+ +   +M+S  +   S WG AV  A +++N +PS+++   S+TP+E
Sbjct: 579 PQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYE 638

Query: 121 LWRGRKPSLSHFRIWGCPTHVLVTTPKKLEPRCIDKCF 156
           +W  +KP L H R++G   +V +   K  + +  DK F
Sbjct: 639 MWHNKKPYLKHLRVFGATVYVHI---KNKQGKFDDKSF 673

[Close]

BLAST of Cmc04g0094151 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.7e-16
Identity = 43/135 (31.85%), Postives = 81/135 (60.00%), Query Frame = 0


Query: 1   MEHKSEALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHEIQFQLSASDT 60
           ++ KS+  + F  +K+ VEN    +I  L SD GGE++ LR  DY+ +H I    S   T
Sbjct: 540 LKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLR--DYLSQHGISHFTSPPHT 599

Query: 61  PQQNDVSERRNRTLLDMVSSMMSYTQFPSSSWGYAVEAAIHILNNVPSKSVS-ETPFELW 120
           P+ N +SER++R +++M  +++S+   P + W YA   A++++N +P+  +  ++PF+  
Sbjct: 600 PEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKL 659

Query: 121 RGRKPSLSHFRIWGC 135
            G+ P+    +++GC
Sbjct: 660 FGQPPNYEKLKVFGC 672

[Close]

BLAST of Cmc04g0094151 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.8e-14
Identity = 41/135 (30.37%), Postives = 75/135 (55.56%), Query Frame = 0


Query: 1   MEHKSEALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHEIQFQLSASDT 60
           ++ KS+  E F  +K  +EN    +I    SD GGE++ L   +Y  +H I    S   T
Sbjct: 561 LKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVAL--WEYFSQHGISHLTSPPHT 620

Query: 61  PQQNDVSERRNRTLLDMVSSMMSYTQFPSSSWGYAVEAAIHILNNVPSKSVS-ETPFELW 120
           P+ N +SER++R +++   +++S+   P + W YA   A++++N +P+  +  E+PF+  
Sbjct: 621 PEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKL 680

Query: 121 RGRKPSLSHFRIWGC 135
            G  P+    R++GC
Sbjct: 681 FGTSPNYDKLRVFGC 693

[Close]

BLAST of Cmc04g0094151 vs. ExPASy Swiss-Prot
Match: P47024 (Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY4B-J PE=3 SV=3)

HSP 1 Score: 50.4 bits (119), Expect = 2.2e-05
Identity = 27/100 (27.00%), Postives = 52/100 (52.00%), Query Frame = 0


Query: 18  VENLLSKKIKILRSDRGGEYMDLRFQDYMIEHEIQFQLSASDTPQQNDVSERRNRTLLDM 77
           VE    +K++ + SDRG E+ + + ++Y I   I   L+++     N  +ER  RT++  
Sbjct: 682 VETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIITD 741

Query: 78  VSSMMSYTQFPSSSWGYAVEAAIHILNNVPSKSVSETPFE 118
            ++++  +      W YAV +A +I N +  KS  + P +
Sbjct: 742 ATTLLRQSNLRVKFWEYAVTSATNIRNYLEHKSTGKLPLK 781

[Close]

BLAST of Cmc04g0094151 vs. ExPASy TrEMBL
Match: A0A5A7U0I1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G00310 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.5e-70
Identity = 135/149 (90.60%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 1   MEHKSEALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHEIQFQLSASDT 60
           MEHKSEALEKFKEYKAEVENLLSKKIKILRS+RGGEYMDLRFQDYMIEHEIQ QLSA  T
Sbjct: 36  MEHKSEALEKFKEYKAEVENLLSKKIKILRSNRGGEYMDLRFQDYMIEHEIQSQLSAPGT 95

Query: 61  PQQNDVSERRNRTLLDMVSSMMSYTQFPSSSWGYAVEAAIHILNNVPSKSVSETPFELWR 120
           PQQN VSE+RNRTLLDMV SMMSYTQ PSS WGYAVE A+HILNNVPSKSVSETPFELWR
Sbjct: 96  PQQNGVSEKRNRTLLDMVRSMMSYTQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWR 155

Query: 121 GRKPSLSHFRIWGCPTHVLVTTPKKLEPR 150
           GRKPSL HFRIWGCP HVLVT PKKLEPR
Sbjct: 156 GRKPSLIHFRIWGCPAHVLVTNPKKLEPR 184

[Close]

BLAST of Cmc04g0094151 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 7.7e-70
Identity = 135/149 (90.60%), Postives = 136/149 (91.28%), Query Frame = 0


Query: 1   MEHKSEALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHEIQFQLSASDT 60
           MEHKSEALEKFKEYK EVENLLSKKIKILRSDRGGEYMDLRFQDYMIEH IQ QLSA  T
Sbjct: 445 MEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGT 504

Query: 61  PQQNDVSERRNRTLLDMVSSMMSYTQFPSSSWGYAVEAAIHILNNVPSKSVSETPFELWR 120
           PQQN VSERRNRTLLDMV SMMSY Q PSS WGYAVE A+HILNNVPSKSVSETPFELWR
Sbjct: 505 PQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWR 564

Query: 121 GRKPSLSHFRIWGCPTHVLVTTPKKLEPR 150
           GRKPSLSHFRIWGCP HVLVT PKKLEPR
Sbjct: 565 GRKPSLSHFRIWGCPAHVLVTNPKKLEPR 593

[Close]

BLAST of Cmc04g0094151 vs. ExPASy TrEMBL
Match: A0A5D3BUN8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00360 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 7.7e-70
Identity = 135/149 (90.60%), Postives = 136/149 (91.28%), Query Frame = 0


Query: 1   MEHKSEALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHEIQFQLSASDT 60
           MEHKSEALEKFKEYK EVENLLSKKIKILRSDRGGEYMDLRFQDYMIEH IQ QLSA  T
Sbjct: 319 MEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGT 378

Query: 61  PQQNDVSERRNRTLLDMVSSMMSYTQFPSSSWGYAVEAAIHILNNVPSKSVSETPFELWR 120
           PQQN VSERRNRTLLDMV SMMSY Q PSS WGYAVE A+HILNNVPSKSVSETPFELWR
Sbjct: 379 PQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWR 438

Query: 121 GRKPSLSHFRIWGCPTHVLVTTPKKLEPR 150
           GRKPSLSHFRIWGCP HVLVT PKKLEPR
Sbjct: 439 GRKPSLSHFRIWGCPAHVLVTNPKKLEPR 467

[Close]

BLAST of Cmc04g0094151 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 7.7e-70
Identity = 135/149 (90.60%), Postives = 136/149 (91.28%), Query Frame = 0


Query: 1   MEHKSEALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHEIQFQLSASDT 60
           MEHKSEALEKFKEYK EVENLLSKKIKILRSDRGGEYMDLRFQDYMIEH IQ QLSA  T
Sbjct: 319 MEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGT 378

Query: 61  PQQNDVSERRNRTLLDMVSSMMSYTQFPSSSWGYAVEAAIHILNNVPSKSVSETPFELWR 120
           PQQN VSERRNRTLLDMV SMMSY Q PSS WGYAVE A+HILNNVPSKSVSETPFELWR
Sbjct: 379 PQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWR 438

Query: 121 GRKPSLSHFRIWGCPTHVLVTTPKKLEPR 150
           GRKPSLSHFRIWGCP HVLVT PKKLEPR
Sbjct: 439 GRKPSLSHFRIWGCPAHVLVTNPKKLEPR 467

[Close]

BLAST of Cmc04g0094151 vs. ExPASy TrEMBL
Match: A0A5D3BWT8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold148G00440 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 7.7e-70
Identity = 137/158 (86.71%), Postives = 139/158 (87.97%), Query Frame = 0


Query: 1   MEHKSEALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHEIQFQLSASDT 60
           MEHKSEALEKFKEYK EVENLLSKKIKILRSDRGGEYMDLRFQDYMIEH IQ QLSA  T
Sbjct: 319 MEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGT 378

Query: 61  PQQNDVSERRNRTLLDMVSSMMSYTQFPSSSWGYAVEAAIHILNNVPSKSVSETPFELWR 120
           PQQN VSERRNRTLLDMV SMMSY Q PSS WGYAVE A+HILNNVPSKSVSETPFELWR
Sbjct: 379 PQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWR 438

Query: 121 GRKPSLSHFRIWGCPTHVLVTTPKKLEPRCIDKCFSLG 159
           GRKPSLSHFRIWGCP HVLVT PKKLEP C   C  +G
Sbjct: 439 GRKPSLSHFRIWGCPAHVLVTNPKKLEP-CSRLCQFVG 475

[Close]

BLAST of Cmc04g0094151 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 3.5e-06
Identity = 26/80 (32.50%), Postives = 43/80 (53.75%), Query Frame = 0


Query: 71  NRTLLDMVSSMMSYTQFPSSSWGYAVEAAIHILNNVPSKSVS-ETPFELWRGRKPSLSHF 130
           NRT+++ V SM+     P +    A   A+HI+N  PS +++   P E+W    P+ S+ 
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61

Query: 131 RIWGCPTHVLVTTPKKLEPR 150
           R +GC  ++      KL+PR
Sbjct: 62  RRFGCVAYI-HCDEGKLKPR 80

The following BLAST results are available for this feature:

BLAST of Cmc04g0094151 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048708.1	9.3e-70	90.60	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0025945.1	1.6e-69	90.60	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
TYK04171.1	1.6e-69	86.71	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0059226.1	1.6e-69	90.60	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK02840.1	1.6e-69	90.60	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0094151 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	8.9e-23	34.57	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.5e-19	31.65	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	4.7e-16	31.85	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	5.8e-14	30.37	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P47024	2.2e-05	27.00	Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc04g0094151 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0I1	4.5e-70	90.60	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G003...	[more]
A0A5A7TZD0	7.7e-70	90.60	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5D3BUN8	7.7e-70	90.60	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G0036...	[more]
A0A5A7UYE8	7.7e-70	90.60	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]
A0A5D3BWT8	7.7e-70	86.71	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold148G0044...	[more]

BLAST of Cmc04g0094151 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00710.1	3.5e-06	32.50	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 4..24
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 2..132 e-value: 7.0E-25 score: 89.5
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..123 score: 15.196124
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 3..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0094151.1	Cmc04g0094151.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding