Cmc04g0094061 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0094061
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr04: 6546121 .. 6546771 (-)
RNA-Seq Expression	Cmc04g0094061
Synteny	Cmc04g0094061

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCCTATGCATTGACTATAAGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGACCTGTTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGATCGGGATATCATCAGTTGAGGATTAAGGATGGTGATGTACCGAAGATGGCCTTTCGTTCCAGATACAGACACTATGAGTTTATTGTAATGTCTTTTGGTTTGATGAATGCTCCGACAGTGTTTATGGACTTGATGAATAAAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATTTTGATATATTCCAAGACAGAGGTCGAGCATGAGGAGCATTTACGTATGGTTCTGCAAACCCTTCGGGATAATAAATTCTATGCAAAGTTCTCGAAATGTGAGTTTTGGTTGAAGCAGGTGTCCTTTCTAGGCCATGTGGCTTCTAAGGCTGGAGTTTATGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCCACCACAGTCAGTGAGGTTCGTAGCTTTTTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACTAGGAAGGGAGCTCCTTTCGTTTGA

mRNA sequence

ATGCGCCTATGCATTGACTATAAGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGACCTGTTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGATCGGGATATCATCAGTTGAGGATTAAGGATGGTGATGTACCGAAGATGGCCTTTCGTTCCAGATACAGACACTATGAGTTTATTGTAATGTCTTTTGGTTTGATGAATGCTCCGACAGTGTTTATGGACTTGATGAATAAAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATTTTGATATATTCCAAGACAGAGGTCGAGCATGAGGAGCATTTACGTATGGTTCTGCAAACCCTTCGGGATAATAAATTCTATGCAAAGTTCTCGAAATGTGAGTTTTGGTTGAAGCAGGTGTCCTTTCTAGGCCATGTGGCTTCTAAGGCTGGAGTTTATGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCCACCACAGTCAGTGAGGTTCGTAGCTTTTTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACTAGGAAGGGAGCTCCTTTCGTTTGA

Coding sequence (CDS)

ATGCGCCTATGCATTGACTATAAGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGACCTGTTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGATCGGGATATCATCAGTTGAGGATTAAGGATGGTGATGTACCGAAGATGGCCTTTCGTTCCAGATACAGACACTATGAGTTTATTGTAATGTCTTTTGGTTTGATGAATGCTCCGACAGTGTTTATGGACTTGATGAATAAAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATTTTGATATATTCCAAGACAGAGGTCGAGCATGAGGAGCATTTACGTATGGTTCTGCAAACCCTTCGGGATAATAAATTCTATGCAAAGTTCTCGAAATGTGAGTTTTGGTTGAAGCAGGTGTCCTTTCTAGGCCATGTGGCTTCTAAGGCTGGAGTTTATGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCCACCACAGTCAGTGAGGTTCGTAGCTTTTTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACTAGGAAGGGAGCTCCTTTCGTTTGA

Protein sequence

MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKMAFRSRYRHYEFIVMSFGLMNAPTVFMDLMNKVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKFYAKFSKCEFWLKQVSFLGHVASKAGVYVDPAKIEAVTSWPRPTTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV

Homology

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BLAST of Cmc04g0094061 vs. NCBI nr
Match: KAA0052348.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 413.7 bits (1062), Expect = 9.8e-112
Identity = 202/216 (93.52%), Postives = 208/216 (96.30%), Query Frame = 0


Query: 1   MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKMA 60
           MRLCIDY+ELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK+A
Sbjct: 498 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKIA 557

Query: 61  FRSRYRHYEFIVMSFGLMNAPTVFMDLMNKVFREFLDTFVIVFIDDILIYSKTEVEHEEH 120
           FRSRY HYEFIVMSFGL NAPTVFMDLMN+VFREFLDTFVIVFIDDILIYSKTE EHEEH
Sbjct: 558 FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 617

Query: 121 LRMVLQTLRDNKFYAKFSKCEFWLKQVSFLGHVASKAGVYVDPAKIEAVTSWPRPTTVSE 180
           LRMVLQTLRDNK YAKFSKCEFWLKQVSFLGHV SKAGVYVDPAKIEA+TSWPRP TVS+
Sbjct: 618 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVYVDPAKIEAITSWPRPFTVSK 677

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 217
           V SFLGLAGYYR+FVENFSRIATPLTQLTRK APFV
Sbjct: 678 VHSFLGLAGYYRQFVENFSRIATPLTQLTRKRAPFV 713

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BLAST of Cmc04g0094061 vs. NCBI nr
Match: TYK01903.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 413.7 bits (1062), Expect = 9.8e-112
Identity = 202/216 (93.52%), Postives = 208/216 (96.30%), Query Frame = 0


Query: 1   MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKMA 60
           MRLCIDY+ELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK+A
Sbjct: 498 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKIA 557

Query: 61  FRSRYRHYEFIVMSFGLMNAPTVFMDLMNKVFREFLDTFVIVFIDDILIYSKTEVEHEEH 120
           FRSRY HYEFIVMSFGL NAPTVFMDLMN+VFREFLDTFVIVFIDDILIYSKTE EHEEH
Sbjct: 558 FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 617

Query: 121 LRMVLQTLRDNKFYAKFSKCEFWLKQVSFLGHVASKAGVYVDPAKIEAVTSWPRPTTVSE 180
           LRMVLQTLRDNK YAKFSKCEFWLKQVSFLGHV SKAGVYVDPAKIEA+TSWPRP TVS+
Sbjct: 618 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVYVDPAKIEAITSWPRPFTVSK 677

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 217
           V SFLGLAGYYR+FVENFSRIATPLTQLTRK APFV
Sbjct: 678 VHSFLGLAGYYRQFVENFSRIATPLTQLTRKRAPFV 713

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BLAST of Cmc04g0094061 vs. NCBI nr
Match: KAA0025979.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 412.5 bits (1059), Expect = 2.2e-111
Identity = 204/216 (94.44%), Postives = 208/216 (96.30%), Query Frame = 0


Query: 1    MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKMA 60
            MRLCIDY+ELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKMA
Sbjct: 961  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKMA 1020

Query: 61   FRSRYRHYEFIVMSFGLMNAPTVFMDLMNKVFREFLDTFVIVFIDDILIYSKTEVEHEEH 120
            FRSRYRHYEFIVMSFGL NAP VFMDLMN+VFREFLDTFVIVFIDDILIYSKT+VEHEEH
Sbjct: 1021 FRSRYRHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTKVEHEEH 1080

Query: 121  LRMVLQTLRDNKFYAKFSKCEFWLKQVSFLGHVASKAGVYVDPAKIEAVTSWPRPTTVSE 180
            LRMVLQTLRDNK YAKFSKCEFWLKQVSFLGHV SKAGV VDPAKIEAVTSW RP+TVSE
Sbjct: 1081 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSE 1140

Query: 181  VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 217
            VRSFLGLAGYYRRFVENFSRIAT LTQLTRK APFV
Sbjct: 1141 VRSFLGLAGYYRRFVENFSRIATRLTQLTRKRAPFV 1176

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BLAST of Cmc04g0094061 vs. NCBI nr
Match: KAA0042119.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 412.1 bits (1058), Expect = 2.9e-111
Identity = 203/216 (93.98%), Postives = 207/216 (95.83%), Query Frame = 0


Query: 1   MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKMA 60
           MRLCIDY+ELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIK+GDVPK A
Sbjct: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKNGDVPKTA 60

Query: 61  FRSRYRHYEFIVMSFGLMNAPTVFMDLMNKVFREFLDTFVIVFIDDILIYSKTEVEHEEH 120
           FRSRY HYEFIVMSFGL NAP VFMDLMN+VFREFLDTFVIVFIDDILIYSKTE EHEEH
Sbjct: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120

Query: 121 LRMVLQTLRDNKFYAKFSKCEFWLKQVSFLGHVASKAGVYVDPAKIEAVTSWPRPTTVSE 180
           LRMVLQTLRDNK YAKFSKCEFWLKQVSFLGHV SKAGV VDPAKIEAVTSW RP+TVSE
Sbjct: 121 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSE 180

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 217
           VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV
Sbjct: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 216

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BLAST of Cmc04g0094061 vs. NCBI nr
Match: KAA0046185.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 411.4 bits (1056), Expect = 4.9e-111
Identity = 202/216 (93.52%), Postives = 206/216 (95.37%), Query Frame = 0


Query: 1    MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKMA 60
            MRLCIDY+ELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK A
Sbjct: 898  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 957

Query: 61   FRSRYRHYEFIVMSFGLMNAPTVFMDLMNKVFREFLDTFVIVFIDDILIYSKTEVEHEEH 120
            FRSRY HYEFIVMSFGL NAP VFMDLMN+VFREFLDTFVIVFIDDILIYSKTE EHEEH
Sbjct: 958  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 1017

Query: 121  LRMVLQTLRDNKFYAKFSKCEFWLKQVSFLGHVASKAGVYVDPAKIEAVTSWPRPTTVSE 180
            LRMVLQTLRDNK YAKFSKCEFWLKQVSFLGH+ SKAGV VDPAKIEAVT W RP+TVSE
Sbjct: 1018 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHMVSKAGVSVDPAKIEAVTGWTRPSTVSE 1077

Query: 181  VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 217
            VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV
Sbjct: 1078 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 1113

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BLAST of Cmc04g0094061 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.0e-47
Identity = 83/210 (39.52%), Postives = 135/210 (64.29%), Query Frame = 0


Query: 2   RLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKMAF 61
           R+ IDY++LN++T+ +RYP+P +D++  +L     F+ IDL  G+HQ+ + +  + K AF
Sbjct: 262 RVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAF 321

Query: 62  RSRYRHYEFIVMSFGLMNAPTVFMDLMNKVFREFLDTFVIVFIDDILIYSKTEVEHEEHL 121
            ++  HYE++ M FGL NAP  F   MN + R  L+   +V++DDI+I+S +  EH   +
Sbjct: 322 STKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSI 381

Query: 122 RMVLQTLRDNKFYAKFSKCEFWLKQVSFLGHVASKAGVYVDPAKIEAVTSWPRPTTVSEV 181
           ++V   L D     +  KCEF  K+ +FLGH+ +  G+  +P K++A+ S+P PT   E+
Sbjct: 382 QLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEI 441

Query: 182 RSFLGLAGYYRRFVENFSRIATPLTQLTRK 212
           R+FLGL GYYR+F+ N++ IA P+T   +K
Sbjct: 442 RAFLGLTGYYRKFIPNYADIAKPMTSCLKK 471

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BLAST of Cmc04g0094061 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.0e-46
Identity = 84/210 (40.00%), Postives = 135/210 (64.29%), Query Frame = 0


Query: 2   RLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKMAF 61
           R+ IDY++LN++TV +R+P+P +D++  +L     F+ IDL  G+HQ+ +    V K AF
Sbjct: 263 RIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAF 322

Query: 62  RSRYRHYEFIVMSFGLMNAPTVFMDLMNKVFREFLDTFVIVFIDDILIYSKTEVEHEEHL 121
            +++ HYE++ M FGL NAP  F   MN + R  L+   +V++DDI+++S +  EH + L
Sbjct: 323 STKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSL 382

Query: 122 RMVLQTLRDNKFYAKFSKCEFWLKQVSFLGHVASKAGVYVDPAKIEAVTSWPRPTTVSEV 181
            +V + L       +  KCEF  ++ +FLGHV +  G+  +P KIEA+  +P PT   E+
Sbjct: 383 GLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEI 442

Query: 182 RSFLGLAGYYRRFVENFSRIATPLTQLTRK 212
           ++FLGL GYYR+F+ NF+ IA P+T+  +K
Sbjct: 443 KAFLGLTGYYRKFIPNFADIAKPMTKCLKK 472

[Close]

BLAST of Cmc04g0094061 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 8.3e-45
Identity = 81/209 (38.76%), Postives = 132/209 (63.16%), Query Frame = 0


Query: 2   RLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKMAF 61
           R+ +D+K LN VT+ + YP+P I+     L  A  F+ +DL SG+HQ+ +K+ D+PK AF
Sbjct: 179 RMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAF 238

Query: 62  RSRYRHYEFIVMSFGLMNAPTVFMDLMNKVFREFLDTFVIVFIDDILIYSKTEVEHEEHL 121
            +    YEF+ + FGL NAP +F  +++ + RE +     V+IDDI+++S+    H ++L
Sbjct: 239 STLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNL 298

Query: 122 RMVLQTLRDNKFYAKFSKCEFWLKQVSFLGHVASKAGVYVDPAKIEAVTSWPRPTTVSEV 181
           R+VL +L          K  F   QV FLG++ +  G+  DP K+ A++  P PT+V E+
Sbjct: 299 RLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKEL 358

Query: 182 RSFLGLAGYYRRFVENFSRIATPLTQLTR 211
           + FLG+  YYR+F+++++++A PLT LTR
Sbjct: 359 KRFLGMTSYYRKFIQDYAKVAKPLTNLTR 387

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BLAST of Cmc04g0094061 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.7e-42
Identity = 83/211 (39.34%), Postives = 129/211 (61.14%), Query Frame = 0


Query: 1   MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKMA 60
           +R+ +DYK LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K+A
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521

Query: 61  FRSRYRHYEFIVMSFGLMNAPTVFMDLMNKVFREFLDTFVIVFIDDILIYSKTEVEHEEH 120
           FR     +E++VM +G+  AP  F   +N +  E  ++ V+ ++DDILI+SK+E EH +H
Sbjct: 522 FRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581

Query: 121 LRMVLQTLRDNKFYAKFSKCEFWLKQVSFLGHVASKAGVYVDPAKIEAVTSWPRPTTVSE 180
           ++ VLQ L++       +KCEF   QV F+G+  S+ G       I+ V  W +P    E
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKE 641

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRK 212
           +R FLG   Y R+F+   S++  PL  L +K
Sbjct: 642 LRQFLGSVNYLRKFIPKTSQLTHPLNNLLKK 672

[Close]

BLAST of Cmc04g0094061 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.7e-42
Identity = 83/211 (39.34%), Postives = 129/211 (61.14%), Query Frame = 0


Query: 1   MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKMA 60
           +R+ +DYK LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K+A
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521

Query: 61  FRSRYRHYEFIVMSFGLMNAPTVFMDLMNKVFREFLDTFVIVFIDDILIYSKTEVEHEEH 120
           FR     +E++VM +G+  AP  F   +N +  E  ++ V+ ++DDILI+SK+E EH +H
Sbjct: 522 FRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581

Query: 121 LRMVLQTLRDNKFYAKFSKCEFWLKQVSFLGHVASKAGVYVDPAKIEAVTSWPRPTTVSE 180
           ++ VLQ L++       +KCEF   QV F+G+  S+ G       I+ V  W +P    E
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKE 641

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRK 212
           +R FLG   Y R+F+   S++  PL  L +K
Sbjct: 642 LRQFLGSVNYLRKFIPKTSQLTHPLNNLLKK 672

[Close]

BLAST of Cmc04g0094061 vs. ExPASy TrEMBL
Match: A0A5A7UAV9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G001870 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 4.8e-112
Identity = 202/216 (93.52%), Postives = 208/216 (96.30%), Query Frame = 0


Query: 1   MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKMA 60
           MRLCIDY+ELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK+A
Sbjct: 498 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKIA 557

Query: 61  FRSRYRHYEFIVMSFGLMNAPTVFMDLMNKVFREFLDTFVIVFIDDILIYSKTEVEHEEH 120
           FRSRY HYEFIVMSFGL NAPTVFMDLMN+VFREFLDTFVIVFIDDILIYSKTE EHEEH
Sbjct: 558 FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 617

Query: 121 LRMVLQTLRDNKFYAKFSKCEFWLKQVSFLGHVASKAGVYVDPAKIEAVTSWPRPTTVSE 180
           LRMVLQTLRDNK YAKFSKCEFWLKQVSFLGHV SKAGVYVDPAKIEA+TSWPRP TVS+
Sbjct: 618 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVYVDPAKIEAITSWPRPFTVSK 677

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 217
           V SFLGLAGYYR+FVENFSRIATPLTQLTRK APFV
Sbjct: 678 VHSFLGLAGYYRQFVENFSRIATPLTQLTRKRAPFV 713

[Close]

BLAST of Cmc04g0094061 vs. ExPASy TrEMBL
Match: A0A5D3BQD5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G001680 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 4.8e-112
Identity = 202/216 (93.52%), Postives = 208/216 (96.30%), Query Frame = 0


Query: 1   MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKMA 60
           MRLCIDY+ELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK+A
Sbjct: 498 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKIA 557

Query: 61  FRSRYRHYEFIVMSFGLMNAPTVFMDLMNKVFREFLDTFVIVFIDDILIYSKTEVEHEEH 120
           FRSRY HYEFIVMSFGL NAPTVFMDLMN+VFREFLDTFVIVFIDDILIYSKTE EHEEH
Sbjct: 558 FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 617

Query: 121 LRMVLQTLRDNKFYAKFSKCEFWLKQVSFLGHVASKAGVYVDPAKIEAVTSWPRPTTVSE 180
           LRMVLQTLRDNK YAKFSKCEFWLKQVSFLGHV SKAGVYVDPAKIEA+TSWPRP TVS+
Sbjct: 618 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVYVDPAKIEAITSWPRPFTVSK 677

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 217
           V SFLGLAGYYR+FVENFSRIATPLTQLTRK APFV
Sbjct: 678 VHSFLGLAGYYRQFVENFSRIATPLTQLTRKRAPFV 713

[Close]

BLAST of Cmc04g0094061 vs. ExPASy TrEMBL
Match: A0A5A7SL46 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002950 PE=4 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 1.1e-111
Identity = 204/216 (94.44%), Postives = 208/216 (96.30%), Query Frame = 0


Query: 1    MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKMA 60
            MRLCIDY+ELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKMA
Sbjct: 961  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKMA 1020

Query: 61   FRSRYRHYEFIVMSFGLMNAPTVFMDLMNKVFREFLDTFVIVFIDDILIYSKTEVEHEEH 120
            FRSRYRHYEFIVMSFGL NAP VFMDLMN+VFREFLDTFVIVFIDDILIYSKT+VEHEEH
Sbjct: 1021 FRSRYRHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTKVEHEEH 1080

Query: 121  LRMVLQTLRDNKFYAKFSKCEFWLKQVSFLGHVASKAGVYVDPAKIEAVTSWPRPTTVSE 180
            LRMVLQTLRDNK YAKFSKCEFWLKQVSFLGHV SKAGV VDPAKIEAVTSW RP+TVSE
Sbjct: 1081 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSE 1140

Query: 181  VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 217
            VRSFLGLAGYYRRFVENFSRIAT LTQLTRK APFV
Sbjct: 1141 VRSFLGLAGYYRRFVENFSRIATRLTQLTRKRAPFV 1176

[Close]

BLAST of Cmc04g0094061 vs. ExPASy TrEMBL
Match: A0A5A7TLA3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G005990 PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 1.4e-111
Identity = 203/216 (93.98%), Postives = 207/216 (95.83%), Query Frame = 0


Query: 1   MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKMA 60
           MRLCIDY+ELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIK+GDVPK A
Sbjct: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKNGDVPKTA 60

Query: 61  FRSRYRHYEFIVMSFGLMNAPTVFMDLMNKVFREFLDTFVIVFIDDILIYSKTEVEHEEH 120
           FRSRY HYEFIVMSFGL NAP VFMDLMN+VFREFLDTFVIVFIDDILIYSKTE EHEEH
Sbjct: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120

Query: 121 LRMVLQTLRDNKFYAKFSKCEFWLKQVSFLGHVASKAGVYVDPAKIEAVTSWPRPTTVSE 180
           LRMVLQTLRDNK YAKFSKCEFWLKQVSFLGHV SKAGV VDPAKIEAVTSW RP+TVSE
Sbjct: 121 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSE 180

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 217
           VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV
Sbjct: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 216

[Close]

BLAST of Cmc04g0094061 vs. ExPASy TrEMBL
Match: A0A5A7TXM6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold376G00490 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 2.4e-111
Identity = 202/216 (93.52%), Postives = 206/216 (95.37%), Query Frame = 0


Query: 1    MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKMA 60
            MRLCIDY+ELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPK A
Sbjct: 898  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 957

Query: 61   FRSRYRHYEFIVMSFGLMNAPTVFMDLMNKVFREFLDTFVIVFIDDILIYSKTEVEHEEH 120
            FRSRY HYEFIVMSFGL NAP VFMDLMN+VFREFLDTFVIVFIDDILIYSKTE EHEEH
Sbjct: 958  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 1017

Query: 121  LRMVLQTLRDNKFYAKFSKCEFWLKQVSFLGHVASKAGVYVDPAKIEAVTSWPRPTTVSE 180
            LRMVLQTLRDNK YAKFSKCEFWLKQVSFLGH+ SKAGV VDPAKIEAVT W RP+TVSE
Sbjct: 1018 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHMVSKAGVSVDPAKIEAVTGWTRPSTVSE 1077

Query: 181  VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 217
            VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV
Sbjct: 1078 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 1113

[Close]

BLAST of Cmc04g0094061 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 104.8 bits (260), Expect = 9.1e-23
Identity = 48/96 (50.00%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 120 HLRMVLQTLRDNKFYAKFSKCEFWLKQVSFLG--HVASKAGVYVDPAKIEAVTSWPRPTT 179
           HL MVLQ    ++FYA   KC F   Q+++LG  H+ S  GV  DPAK+EA+  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 180 VSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGA 214
            +E+R FLGL GYYRRFV+N+ +I  PLT+L +K +
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS 98

The following BLAST results are available for this feature:

BLAST of Cmc04g0094061 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052348.1	9.8e-112	93.52	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK01903.1	9.8e-112	93.52	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0025979.1	2.2e-111	94.44	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0042119.1	2.9e-111	93.98	pol protein [Cucumis melo var. makuwa]	[more]
KAA0046185.1	4.9e-111	93.52	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0094061 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	1.0e-47	39.52	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	2.0e-46	40.00	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	8.3e-45	38.76	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P0CT41	1.7e-42	39.34	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.7e-42	39.34	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc04g0094061 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UAV9	4.8e-112	93.52	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]
A0A5D3BQD5	4.8e-112	93.52	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7SL46	1.1e-111	94.44	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34...	[more]
A0A5A7TLA3	1.4e-111	93.98	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G005990 PE...	[more]
A0A5A7TXM6	2.4e-111	93.52	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37...	[more]

BLAST of Cmc04g0094061 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	9.1e-23	50.00	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 3..152 e-value: 1.4E-25 score: 90.1
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..154 score: 10.105557
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 164..216 e-value: 2.9E-20 score: 74.0
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 19..153 e-value: 1.4E-64 score: 219.3
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..79 e-value: 1.4E-64 score: 219.3
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..210
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..210
None	No IPR available	CDD	cd01647	RT_LTR	coord: 2..153 e-value: 2.34905E-77 score: 228.249
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0094061.1	Cmc04g0094061.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding