Cmc04g0093141 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0093141
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase domain-containing protein
Location	CMiso1.1chr04: 5234067 .. 5234771 (-)
RNA-Seq Expression	Cmc04g0093141
Synteny	Cmc04g0093141

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGGACTCGATCCAAAGGTGGCCGTTCATCGCTTAGCGATCAAACCAGAGCATCGGCCAGTCAAGCAAGCCCAACCACGATTTCGACCAGAACTCATTTCTCAAATCGAGGAAGAGGTAAATAAGCTCATTGAGGCTGGATTTATTCGTGAAGTCAAGTACCCAACATGGATAGCTAATATTGTTCCTGTAAGGAAAAAGAATGGCCAACAACGTGTTTGTGTCGATTTTCGCGACCTAAATAACGCATGCCCAAAAGATGACTTTCCTTTGCCTATCATGGAAATCATGATAGATGCAAATGCAGGGCATGAAGCTTTATCTTTCATGGATGGATCGTCAGGATATAATCAGATTAGAATGACTCTAGATGACGAGGAGAAAACAGCATTTCGAACTCCAAAAGGTATATACTGTTATAAGGTAATGCCTTTCGGATTGAAAAATGCAGGTGCTACATACCAGCGCGCTATGCAAAGGATCTTTGATGATATGCTACATAAACACATTGAATGTTATGTTGACGATCTCGTAGTCAAGTCCAAGAAGAAATGCGATCACTTGAAAGACCTGAAGCTGGTACTTGATCGCCTCAGAAAATATCAACTAAGAATGAACCCTCTCAAGTGTGCATTTGGTGTAACTTCAGGGAAATTTTTGGGATTTATAGTGAGACATCGCGACATCGAAGTTGATCACTAA

mRNA sequence

ATGCCTGGACTCGATCCAAAGGTGGCCGTTCATCGCTTAGCGATCAAACCAGAGCATCGGCCAGTCAAGCAAGCCCAACCACGATTTCGACCAGAACTCATTTCTCAAATCGAGGAAGAGGTAAATAAGCTCATTGAGGCTGGATTTATTCGTGAAGTCAAGTACCCAACATGGATAGCTAATATTGTTCCTGTAAGGAAAAAGAATGGCCAACAACGTGTTTGTGTCGATTTTCGCGACCTAAATAACGCATGCCCAAAAGATGACTTTCCTTTGCCTATCATGGAAATCATGATAGATGCAAATGCAGGGCATGAAGCTTTATCTTTCATGGATGGATCGTCAGGATATAATCAGATTAGAATGACTCTAGATGACGAGGAGAAAACAGCATTTCGAACTCCAAAAGGTATATACTGTTATAAGGTAATGCCTTTCGGATTGAAAAATGCAGGTGCTACATACCAGCGCGCTATGCAAAGGATCTTTGATGATATGCTACATAAACACATTGAATGTTATGTTGACGATCTCGTAGTCAAGTCCAAGAAGAAATGCGATCACTTGAAAGACCTGAAGCTGGTACTTGATCGCCTCAGAAAATATCAACTAAGAATGAACCCTCTCAAGTGTGCATTTGGTGTAACTTCAGGGAAATTTTTGGGATTTATAGTGAGACATCGCGACATCGAAGTTGATCACTAA

Coding sequence (CDS)

ATGCCTGGACTCGATCCAAAGGTGGCCGTTCATCGCTTAGCGATCAAACCAGAGCATCGGCCAGTCAAGCAAGCCCAACCACGATTTCGACCAGAACTCATTTCTCAAATCGAGGAAGAGGTAAATAAGCTCATTGAGGCTGGATTTATTCGTGAAGTCAAGTACCCAACATGGATAGCTAATATTGTTCCTGTAAGGAAAAAGAATGGCCAACAACGTGTTTGTGTCGATTTTCGCGACCTAAATAACGCATGCCCAAAAGATGACTTTCCTTTGCCTATCATGGAAATCATGATAGATGCAAATGCAGGGCATGAAGCTTTATCTTTCATGGATGGATCGTCAGGATATAATCAGATTAGAATGACTCTAGATGACGAGGAGAAAACAGCATTTCGAACTCCAAAAGGTATATACTGTTATAAGGTAATGCCTTTCGGATTGAAAAATGCAGGTGCTACATACCAGCGCGCTATGCAAAGGATCTTTGATGATATGCTACATAAACACATTGAATGTTATGTTGACGATCTCGTAGTCAAGTCCAAGAAGAAATGCGATCACTTGAAAGACCTGAAGCTGGTACTTGATCGCCTCAGAAAATATCAACTAAGAATGAACCCTCTCAAGTGTGCATTTGGTGTAACTTCAGGGAAATTTTTGGGATTTATAGTGAGACATCGCGACATCGAAGTTGATCACTAA

Protein sequence

MPGLDPKVAVHRLAIKPEHRPVKQAQPRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQQRVCVDFRDLNNACPKDDFPLPIMEIMIDANAGHEALSFMDGSSGYNQIRMTLDDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRDIEVDH

Homology

[Close]

BLAST of Cmc04g0093141 vs. NCBI nr
Match: KAA0041619.1 (uncharacterized protein E6C27_scaffold93G00920 [Cucumis melo var. makuwa])

HSP 1 Score: 477.2 bits (1227), Expect = 7.8e-131
Identity = 229/234 (97.86%), Postives = 229/234 (97.86%), Query Frame = 0


Query: 1   MPGLDPKVAVHRLAIKPEHRPVKQAQPRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 60
           MPGLDPKVAVHRLAIKPEHRPVKQAQPRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA
Sbjct: 423 MPGLDPKVAVHRLAIKPEHRPVKQAQPRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 482

Query: 61  NIVPVRKKNGQQRVCVDFRDLNNACPKDDFPLPIMEIMIDANAGHEALSFMDGSSGYNQI 120
           NIVPVRKKNGQ RVCVDFRDLNN CPKDDFPLPIMEIMIDANAGHEALSFMDGSSGYNQI
Sbjct: 483 NIVPVRKKNGQLRVCVDFRDLNNTCPKDDFPLPIMEIMIDANAGHEALSFMDGSSGYNQI 542

Query: 121 RMTLDDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 180
           RM LDDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV
Sbjct: 543 RMALDDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 602

Query: 181 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRDIEVDH 235
           KSKKKCDHLKDLKLVLDR RKYQLRMNPLKCAFGVTSGKFLGFIVRHR IEVDH
Sbjct: 603 KSKKKCDHLKDLKLVLDRFRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDH 656

[Close]

BLAST of Cmc04g0093141 vs. NCBI nr
Match: TYJ98225.1 (uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa])

HSP 1 Score: 473.0 bits (1216), Expect = 1.5e-129
Identity = 228/234 (97.44%), Postives = 229/234 (97.86%), Query Frame = 0


Query: 1    MPGLDPKVAVHRLAIKPEHRPVKQAQPRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 60
            MPGLDPKVAVHRLAIKPEHRPVKQAQ RFRPELISQIEEEVNKLIEAGFIREVKYPTWIA
Sbjct: 1321 MPGLDPKVAVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 1380

Query: 61   NIVPVRKKNGQQRVCVDFRDLNNACPKDDFPLPIMEIMIDANAGHEALSFMDGSSGYNQI 120
            NIVPVRKKNGQ RVCVDFRDLNNACPKDDFPLPIMEIMIDA AGHEALSFMDGSSGYNQI
Sbjct: 1381 NIVPVRKKNGQLRVCVDFRDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSGYNQI 1440

Query: 121  RMTLDDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 180
            RM L+DEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV
Sbjct: 1441 RMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 1500

Query: 181  KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRDIEVDH 235
            KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHR IEVDH
Sbjct: 1501 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDH 1554

[Close]

BLAST of Cmc04g0093141 vs. NCBI nr
Match: TYK02262.1 (uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 473.0 bits (1216), Expect = 1.5e-129
Identity = 228/234 (97.44%), Postives = 229/234 (97.86%), Query Frame = 0


Query: 1   MPGLDPKVAVHRLAIKPEHRPVKQAQPRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 60
           MPGLDPKVAVHRLAIKPEHRPVKQAQ RFRPELISQIEEEVNKLIEAGFIREVKYPTWIA
Sbjct: 697 MPGLDPKVAVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 756

Query: 61  NIVPVRKKNGQQRVCVDFRDLNNACPKDDFPLPIMEIMIDANAGHEALSFMDGSSGYNQI 120
           NIVPVRKKNGQ RVCVDFRDLNNACPKDDFPLPIMEIMIDA AGHEALSFMDGSSGYNQI
Sbjct: 757 NIVPVRKKNGQLRVCVDFRDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSGYNQI 816

Query: 121 RMTLDDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 180
           RM L+DEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV
Sbjct: 817 RMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 876

Query: 181 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRDIEVDH 235
           KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHR IEVDH
Sbjct: 877 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDH 930

[Close]

BLAST of Cmc04g0093141 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 472.6 bits (1215), Expect = 1.9e-129
Identity = 227/234 (97.01%), Postives = 229/234 (97.86%), Query Frame = 0


Query: 1    MPGLDPKVAVHRLAIKPEHRPVKQAQPRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 60
            MPGLDPKVAVHRLAIKPEHRPVKQAQ RFRPELISQIEEEVNKLIEAGFIREVKYPTWIA
Sbjct: 1343 MPGLDPKVAVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 1402

Query: 61   NIVPVRKKNGQQRVCVDFRDLNNACPKDDFPLPIMEIMIDANAGHEALSFMDGSSGYNQI 120
            NIVPVRKKNGQ RVCVDFRDLNNACPKDDFPLPIMEIMIDA AGHEALSFMDGSSGYNQI
Sbjct: 1403 NIVPVRKKNGQLRVCVDFRDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSGYNQI 1462

Query: 121  RMTLDDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 180
            RM L+DEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKH+ECYVDDLVV
Sbjct: 1463 RMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHVECYVDDLVV 1522

Query: 181  KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRDIEVDH 235
            KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHR IEVDH
Sbjct: 1523 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDH 1576

[Close]

BLAST of Cmc04g0093141 vs. NCBI nr
Match: TYK16275.1 (uncharacterized protein E5676_scaffold21G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 472.6 bits (1215), Expect = 1.9e-129
Identity = 227/234 (97.01%), Postives = 229/234 (97.86%), Query Frame = 0


Query: 1   MPGLDPKVAVHRLAIKPEHRPVKQAQPRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 60
           MPGLDPKVAVHRLAIKPEHRPVKQAQ RFRPELISQIEEEVNKLIEAGFIREVKYPTWIA
Sbjct: 526 MPGLDPKVAVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 585

Query: 61  NIVPVRKKNGQQRVCVDFRDLNNACPKDDFPLPIMEIMIDANAGHEALSFMDGSSGYNQI 120
           NIVPVRKKNGQ RVCVDFRDLNNACPKDDFPLPIMEIMIDA AGHEALSFMDGSSGYNQI
Sbjct: 586 NIVPVRKKNGQLRVCVDFRDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSGYNQI 645

Query: 121 RMTLDDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 180
           RM L+DEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKH+ECYVDDLVV
Sbjct: 646 RMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHVECYVDDLVV 705

Query: 181 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRDIEVDH 235
           KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHR IEVDH
Sbjct: 706 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDH 759

[Close]

BLAST of Cmc04g0093141 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 133.3 bits (334), Expect = 3.6e-30
Identity = 82/220 (37.27%), Postives = 120/220 (54.55%), Query Frame = 0


Query: 11  HRLAIKPEHRPVKQAQPRFRPELISQIEEE-----VNKLIEAGFIREVKYPTWIANIVPV 70
           H + IKP  R      PR +P  +++  E+     V KL++  FI   K P   + +V V
Sbjct: 586 HDIEIKPGAR-----LPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPC-SSPVVLV 645

Query: 71  RKKNGQQRVCVDFRDLNNACPKDDFPLPIMEIMIDANAGHEALSFMDGSSGYNQIRMTLD 130
            KK+G  R+CVD+R LN A   D FPLP ++ ++      +  + +D  SGY+QI M   
Sbjct: 646 PKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPK 705

Query: 131 DEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKK 190
           D  KTAF TP G Y Y VMPFGL NA +T+ R M   F D+  + +  Y+DD+++ S+  
Sbjct: 706 DRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESP 765

Query: 191 CDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIV 226
            +H K L  VL+RL+   L +   KC F     +FLG+ +
Sbjct: 766 EEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSI 797

[Close]

BLAST of Cmc04g0093141 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 3.6e-30
Identity = 82/220 (37.27%), Postives = 120/220 (54.55%), Query Frame = 0


Query: 11  HRLAIKPEHRPVKQAQPRFRPELISQIEEE-----VNKLIEAGFIREVKYPTWIANIVPV 70
           H + IKP  R      PR +P  +++  E+     V KL++  FI   K P   + +V V
Sbjct: 612 HDIEIKPGAR-----LPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPC-SSPVVLV 671

Query: 71  RKKNGQQRVCVDFRDLNNACPKDDFPLPIMEIMIDANAGHEALSFMDGSSGYNQIRMTLD 130
            KK+G  R+CVD+R LN A   D FPLP ++ ++      +  + +D  SGY+QI M   
Sbjct: 672 PKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPK 731

Query: 131 DEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKK 190
           D  KTAF TP G Y Y VMPFGL NA +T+ R M   F D+  + +  Y+DD+++ S+  
Sbjct: 732 DRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESP 791

Query: 191 CDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIV 226
            +H K L  VL+RL+   L +   KC F     +FLG+ +
Sbjct: 792 EEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSI 823

[Close]

BLAST of Cmc04g0093141 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-29
Identity = 67/201 (33.33%), Postives = 113/201 (56.22%), Query Frame = 0


Query: 31  PELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVR---KKNGQQRVCVDFRDLNNACPK 90
           P  +  + +E+N+ +++G IRE K      N  PV    KK G  R+ VD++ LN     
Sbjct: 422 PGKMQAMNDEINQGLKSGIIRESK----AINACPVMFVPKKEGTLRMVVDYKPLNKYVKP 481

Query: 91  DDFPLPIMEIMIDANAGHEALSFMDGSSGYNQIRMTLDDEEKTAFRTPKGIYCYKVMPFG 150
           + +PLP++E ++    G    + +D  S Y+ IR+   DE K AFR P+G++ Y VMP+G
Sbjct: 482 NIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYG 541

Query: 151 LKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMN 210
           +  A A +Q  +  I  +    H+ CY+DD+++ SK + +H+K +K VL +L+   L +N
Sbjct: 542 ISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIIN 601

Query: 211 PLKCAFGVTSGKFLGFIVRHR 229
             KC F  +  KF+G+ +  +
Sbjct: 602 QAKCEFHQSQVKFIGYHISEK 618

[Close]

BLAST of Cmc04g0093141 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-29
Identity = 67/201 (33.33%), Postives = 113/201 (56.22%), Query Frame = 0


Query: 31  PELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVR---KKNGQQRVCVDFRDLNNACPK 90
           P  +  + +E+N+ +++G IRE K      N  PV    KK G  R+ VD++ LN     
Sbjct: 422 PGKMQAMNDEINQGLKSGIIRESK----AINACPVMFVPKKEGTLRMVVDYKPLNKYVKP 481

Query: 91  DDFPLPIMEIMIDANAGHEALSFMDGSSGYNQIRMTLDDEEKTAFRTPKGIYCYKVMPFG 150
           + +PLP++E ++    G    + +D  S Y+ IR+   DE K AFR P+G++ Y VMP+G
Sbjct: 482 NIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYG 541

Query: 151 LKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMN 210
           +  A A +Q  +  I  +    H+ CY+DD+++ SK + +H+K +K VL +L+   L +N
Sbjct: 542 ISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIIN 601

Query: 211 PLKCAFGVTSGKFLGFIVRHR 229
             KC F  +  KF+G+ +  +
Sbjct: 602 QAKCEFHQSQVKFIGYHISEK 618

[Close]

BLAST of Cmc04g0093141 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-29
Identity = 67/201 (33.33%), Postives = 113/201 (56.22%), Query Frame = 0


Query: 31  PELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVR---KKNGQQRVCVDFRDLNNACPK 90
           P  +  + +E+N+ +++G IRE K      N  PV    KK G  R+ VD++ LN     
Sbjct: 422 PGKMQAMNDEINQGLKSGIIRESK----AINACPVMFVPKKEGTLRMVVDYKPLNKYVKP 481

Query: 91  DDFPLPIMEIMIDANAGHEALSFMDGSSGYNQIRMTLDDEEKTAFRTPKGIYCYKVMPFG 150
           + +PLP++E ++    G    + +D  S Y+ IR+   DE K AFR P+G++ Y VMP+G
Sbjct: 482 NIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYG 541

Query: 151 LKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMN 210
           +  A A +Q  +  I  +    H+ CY+DD+++ SK + +H+K +K VL +L+   L +N
Sbjct: 542 ISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIIN 601

Query: 211 PLKCAFGVTSGKFLGFIVRHR 229
             KC F  +  KF+G+ +  +
Sbjct: 602 QAKCEFHQSQVKFIGYHISEK 618

[Close]

BLAST of Cmc04g0093141 vs. ExPASy TrEMBL
Match: A0A5A7TJS7 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00920 PE=4 SV=1)

HSP 1 Score: 477.2 bits (1227), Expect = 3.8e-131
Identity = 229/234 (97.86%), Postives = 229/234 (97.86%), Query Frame = 0


Query: 1   MPGLDPKVAVHRLAIKPEHRPVKQAQPRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 60
           MPGLDPKVAVHRLAIKPEHRPVKQAQPRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA
Sbjct: 423 MPGLDPKVAVHRLAIKPEHRPVKQAQPRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 482

Query: 61  NIVPVRKKNGQQRVCVDFRDLNNACPKDDFPLPIMEIMIDANAGHEALSFMDGSSGYNQI 120
           NIVPVRKKNGQ RVCVDFRDLNN CPKDDFPLPIMEIMIDANAGHEALSFMDGSSGYNQI
Sbjct: 483 NIVPVRKKNGQLRVCVDFRDLNNTCPKDDFPLPIMEIMIDANAGHEALSFMDGSSGYNQI 542

Query: 121 RMTLDDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 180
           RM LDDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV
Sbjct: 543 RMALDDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 602

Query: 181 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRDIEVDH 235
           KSKKKCDHLKDLKLVLDR RKYQLRMNPLKCAFGVTSGKFLGFIVRHR IEVDH
Sbjct: 603 KSKKKCDHLKDLKLVLDRFRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDH 656

[Close]

BLAST of Cmc04g0093141 vs. ExPASy TrEMBL
Match: A0A5D3BTY1 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00630 PE=4 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 7.2e-130
Identity = 228/234 (97.44%), Postives = 229/234 (97.86%), Query Frame = 0


Query: 1   MPGLDPKVAVHRLAIKPEHRPVKQAQPRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 60
           MPGLDPKVAVHRLAIKPEHRPVKQAQ RFRPELISQIEEEVNKLIEAGFIREVKYPTWIA
Sbjct: 697 MPGLDPKVAVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 756

Query: 61  NIVPVRKKNGQQRVCVDFRDLNNACPKDDFPLPIMEIMIDANAGHEALSFMDGSSGYNQI 120
           NIVPVRKKNGQ RVCVDFRDLNNACPKDDFPLPIMEIMIDA AGHEALSFMDGSSGYNQI
Sbjct: 757 NIVPVRKKNGQLRVCVDFRDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSGYNQI 816

Query: 121 RMTLDDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 180
           RM L+DEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV
Sbjct: 817 RMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 876

Query: 181 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRDIEVDH 235
           KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHR IEVDH
Sbjct: 877 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDH 930

[Close]

BLAST of Cmc04g0093141 vs. ExPASy TrEMBL
Match: A0A5D3BIH8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001270 PE=4 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 7.2e-130
Identity = 228/234 (97.44%), Postives = 229/234 (97.86%), Query Frame = 0


Query: 1    MPGLDPKVAVHRLAIKPEHRPVKQAQPRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 60
            MPGLDPKVAVHRLAIKPEHRPVKQAQ RFRPELISQIEEEVNKLIEAGFIREVKYPTWIA
Sbjct: 1321 MPGLDPKVAVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 1380

Query: 61   NIVPVRKKNGQQRVCVDFRDLNNACPKDDFPLPIMEIMIDANAGHEALSFMDGSSGYNQI 120
            NIVPVRKKNGQ RVCVDFRDLNNACPKDDFPLPIMEIMIDA AGHEALSFMDGSSGYNQI
Sbjct: 1381 NIVPVRKKNGQLRVCVDFRDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSGYNQI 1440

Query: 121  RMTLDDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 180
            RM L+DEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV
Sbjct: 1441 RMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 1500

Query: 181  KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRDIEVDH 235
            KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHR IEVDH
Sbjct: 1501 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDH 1554

[Close]

BLAST of Cmc04g0093141 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 9.4e-130
Identity = 227/234 (97.01%), Postives = 229/234 (97.86%), Query Frame = 0


Query: 1    MPGLDPKVAVHRLAIKPEHRPVKQAQPRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 60
            MPGLDPKVAVHRLAIKPEHRPVKQAQ RFRPELISQIEEEVNKLIEAGFIREVKYPTWIA
Sbjct: 1343 MPGLDPKVAVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 1402

Query: 61   NIVPVRKKNGQQRVCVDFRDLNNACPKDDFPLPIMEIMIDANAGHEALSFMDGSSGYNQI 120
            NIVPVRKKNGQ RVCVDFRDLNNACPKDDFPLPIMEIMIDA AGHEALSFMDGSSGYNQI
Sbjct: 1403 NIVPVRKKNGQLRVCVDFRDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSGYNQI 1462

Query: 121  RMTLDDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 180
            RM L+DEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKH+ECYVDDLVV
Sbjct: 1463 RMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHVECYVDDLVV 1522

Query: 181  KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRDIEVDH 235
            KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHR IEVDH
Sbjct: 1523 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDH 1576

[Close]

BLAST of Cmc04g0093141 vs. ExPASy TrEMBL
Match: A0A5D3CXS1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00440 PE=4 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 9.4e-130
Identity = 227/234 (97.01%), Postives = 229/234 (97.86%), Query Frame = 0


Query: 1   MPGLDPKVAVHRLAIKPEHRPVKQAQPRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 60
           MPGLDPKVAVHRLAIKPEHRPVKQAQ RFRPELISQIEEEVNKLIEAGFIREVKYPTWIA
Sbjct: 526 MPGLDPKVAVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 585

Query: 61  NIVPVRKKNGQQRVCVDFRDLNNACPKDDFPLPIMEIMIDANAGHEALSFMDGSSGYNQI 120
           NIVPVRKKNGQ RVCVDFRDLNNACPKDDFPLPIMEIMIDA AGHEALSFMDGSSGYNQI
Sbjct: 586 NIVPVRKKNGQLRVCVDFRDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSGYNQI 645

Query: 121 RMTLDDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 180
           RM L+DEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKH+ECYVDDLVV
Sbjct: 646 RMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHVECYVDDLVV 705

Query: 181 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRDIEVDH 235
           KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHR IEVDH
Sbjct: 706 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDH 759

The following BLAST results are available for this feature:

BLAST of Cmc04g0093141 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041619.1	7.8e-131	97.86	uncharacterized protein E6C27_scaffold93G00920 [Cucumis melo var. makuwa]	[more]
TYJ98225.1	1.5e-129	97.44	uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]	[more]
TYK02262.1	1.5e-129	97.44	uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa]	[more]
KAA0047477.1	1.9e-129	97.01	uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]	[more]
TYK16275.1	1.9e-129	97.01	uncharacterized protein E5676_scaffold21G00440 [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0093141 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	3.6e-30	37.27	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	3.6e-30	37.27	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	1.4e-29	33.33	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.4e-29	33.33	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	1.4e-29	33.33	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc04g0093141 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TJS7	3.8e-131	97.86	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00920 ...	[more]
A0A5D3BTY1	7.2e-130	97.44	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00630 ...	[more]
A0A5D3BIH8	7.2e-130	97.44	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TZU9	9.4e-130	97.01	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]
A0A5D3CXS1	9.4e-130	97.01	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Cmc04g0093141 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 90..225 e-value: 1.9E-66 score: 225.4
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 65..225 e-value: 5.1E-27 score: 94.8
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..225 score: 8.547633
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 11..150 e-value: 1.9E-66 score: 225.4
None	No IPR available	PANTHER	PTHR24559:SF341	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 1..233
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 1..233
None	No IPR available	CDD	cd01647	RT_LTR	coord: 48..225 e-value: 7.03565E-86 score: 250.59
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 8..233

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0093141.1	Cmc04g0093141.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity