Cmc04g0093071 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0093071
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	protein RADIALIS-like 3
Location	CMiso1.1chr04: 5088284 .. 5089449 (-)
RNA-Seq Expression	Cmc04g0093071
Synteny	Cmc04g0093071

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGCAAATAAGGTCGAAGTTGAACCCACTTGCCCATAAAATTCGGTTTGTGTAATTAGAATTAGTATTTAAGGAAACCATCAGAAAATGGCAGCAAAAAAGAGAGAGAAAATTTGAGAGTGTGTAGGAGGGGGAGTTGTGATTTTGATTTGATTTTATTTTTTAAGGAGGATGGGGTCTGGATCCAATTGGACGGCGAAACAGAACAAAGTGTTTGAAAATGCATTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCAGAATCTGGCAAGAGCCGTCGGGGGCAAGACGGCGGAGGAAGTGAAACGACACTACGAAAGGTTGGTTGAAGATGTGAACAAGATCGAAACCGGCCAAGTTCCTTTCCCTAATTACAGAAGGTCCGGACCTGCCGCCAGGGGATTTTGCTTTCTTGACCAAGAACAGAGGTAACTAAAGTAAAATGCCCCAATTTTTTTATTTTTATTTTTTTTTTTAATTTTTAATTCGACTTTCAATTTTTTGTGTACTGTATTTCTAAAATCCACTTGGTAATTATAATTTGTTTTCTTGTTTTGAAAAATTAATAACAACAACGAGGACAACAACAAAACTTTTGCACTCAAAATTTTGTTCTCTGTTTCCCAAATGTAGCCAAAGTTTTAATGAGTATTTCAAGGAAAAACTACTCAGAAATATCAATATTTGAACTTTTGTTGTCATATTTATTATTTGTAATAATATTTTTTTTATATATATATATATATATATACAAAATCAAAGTCCAAGTTATGGTTTATTTAAAATTAGTCAAAAATTGATTTAAATTGTAATGGGTTTATGTGAATAATGCAGGATGAGGAGTCTACAATTGAATTGAAGTAGGAATGTGGGAAAGACCAGAGTTCTATATTTCTATCTCTCCATTAACTTTTTCTCCACCTAAATTTCCAACCAACAAATATTTATGAAATAATGTAGCTTACGTAGTTTTAATTTTCTTCACCCATCTTCAATTGTAATTTCTAGTTTTTATCTTTTATCAACTCTCCTCCAAATTTGTTTTATATTAAATAAATACCCTTTAATATAGTTTAAAACACATAAAATTGGAGGAAAGGATCACCGGGGTTGAGTTTACTATGTTGTTGAACTCCAAATAATATTAATAAAAAATAAATCAAT

mRNA sequence

AGGCAAATAAGGTCGAAGTTGAACCCACTTGCCCATAAAATTCGGTTTGTGTAATTAGAATTAGTATTTAAGGAAACCATCAGAAAATGGCAGCAAAAAAGAGAGAGAAAATTTGAGAGTGTGTAGGAGGGGGAGTTGTGATTTTGATTTGATTTTATTTTTTAAGGAGGATGGGGTCTGGATCCAATTGGACGGCGAAACAGAACAAAGTGTTTGAAAATGCATTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCAGAATCTGGCAAGAGCCGTCGGGGGCAAGACGGCGGAGGAAGTGAAACGACACTACGAAAGGTTGGTTGAAGATGTGAACAAGATCGAAACCGGCCAAGTTCCTTTCCCTAATTACAGAAGGTCCGGACCTGCCGCCAGGGGATTTTGCTTTCTTGACCAAGAACAGAGGATGAGGAGTCTACAATTGAATTGAAGTAGGAATGTGGGAAAGACCAGAGTTCTATATTTCTATCTCTCCATTAACTTTTTCTCCACCTAAATTTCCAACCAACAAATATTTATGAAATAATGTAGCTTACGTAGTTTTAATTTTCTTCACCCATCTTCAATTGTAATTTCTAGTTTTTATCTTTTATCAACTCTCCTCCAAATTTGTTTTATATTAAATAAATACCCTTTAATATAGTTTAAAACACATAAAATTGGAGGAAAGGATCACCGGGGTTGAGTTTACTATGTTGTTGAACTCCAAATAATATTAATAAAAAATAAATCAAT

Coding sequence (CDS)

ATGGGGTCTGGATCCAATTGGACGGCGAAACAGAACAAAGTGTTTGAAAATGCATTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCAGAATCTGGCAAGAGCCGTCGGGGGCAAGACGGCGGAGGAAGTGAAACGACACTACGAAAGGTTGGTTGAAGATGTGAACAAGATCGAAACCGGCCAAGTTCCTTTCCCTAATTACAGAAGGTCCGGACCTGCCGCCAGGGGATTTTGCTTTCTTGACCAAGAACAGAGGATGAGGAGTCTACAATTGAATTGA

Protein sequence

MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN

Homology

[Close]

BLAST of Cmc04g0093071 vs. NCBI nr
Match: XP_004147867.1 (protein RADIALIS-like 3 [Cucumis sativus] >KGN59962.1 hypothetical protein Csa_001999 [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 1.0e-44
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60
          MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN 95
          TGQVPFPNYRRS PAARGF FLDQEQRMRSLQLN
Sbjct: 61 TGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN 94

[Close]

BLAST of Cmc04g0093071 vs. NCBI nr
Match: XP_038905673.1 (protein RADIALIS-like 3 [Benincasa hispida])

HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 87/94 (92.55%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60
          MGSGS+WTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYERLVEDVNKIE
Sbjct: 1  MGSGSHWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN 95
          TGQVPFPNYRRSGPA RGFCF+D+EQRMRSL+L+
Sbjct: 61 TGQVPFPNYRRSGPAVRGFCFVDEEQRMRSLRLH 94

[Close]

BLAST of Cmc04g0093071 vs. NCBI nr
Match: XP_008465612.1 (PREDICTED: protein RADIALIS-like 3 [Cucumis melo] >KAA0041605.1 protein RADIALIS-like 3 [Cucumis melo var. makuwa] >TYK19652.1 protein RADIALIS-like 3 [Cucumis melo var. makuwa])

HSP 1 Score: 182.6 bits (462), Expect = 1.6e-42
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60
          MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYERLVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSGPAARGFCFLDQEQR 88
          TGQVPFPNYRRSGPAARGFCFLDQEQR
Sbjct: 61 TGQVPFPNYRRSGPAARGFCFLDQEQR 87

[Close]

BLAST of Cmc04g0093071 vs. NCBI nr
Match: XP_022138113.1 (protein RADIALIS-like 3 [Momordica charantia])

HSP 1 Score: 171.0 bits (432), Expect = 4.8e-39
Identity = 80/95 (84.21%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1   MGS-GSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKI 60
           MGS GSNWTAKQNKVFENALA+YDKDTP+RW NLARAVGGKTAEEVKRHYERLV+DVNKI
Sbjct: 26  MGSGGSNWTAKQNKVFENALAVYDKDTPDRWHNLARAVGGKTAEEVKRHYERLVDDVNKI 85

Query: 61  ETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN 95
           ETGQVPFPNYR+S    RGFCF+D+E+RMRSL+L+
Sbjct: 86  ETGQVPFPNYRKSAHGPRGFCFIDEEKRMRSLRLH 120

[Close]

BLAST of Cmc04g0093071 vs. NCBI nr
Match: XP_022941099.1 (protein RADIALIS-like 3 [Cucurbita moschata] >XP_023525029.1 protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo] >KAG6608538.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037861.1 Protein RADIALIS-like 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36
Identity = 77/94 (81.91%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60
          M SGS WTAKQNK+FENALAIYD+DTPERW NLARAVGGKTAEEVKRHYE LVEDVNKIE
Sbjct: 1  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN 95
          +GQVPFP Y +S PA  GF F+D+EQRMRSLQL+
Sbjct: 61 SGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH 94

[Close]

BLAST of Cmc04g0093071 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 5.2e-28
Identity = 58/91 (63.74%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 3  SGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETG 62
          S  +WTAKQNK FE ALA YD+DTP RWQN+A+ VGGKT EEVKRHYE LV+D+N IE G
Sbjct: 10 SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENG 69

Query: 63 QVPFPNYRRSGPAARGFCFLDQEQRMRSLQL 94
           VPFPNYR SG    G     +E+RMR+++L
Sbjct: 70 HVPFPNYRTSGGCTNG-RLSQEEKRMRNMRL 99

[Close]

BLAST of Cmc04g0093071 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.1e-25
Identity = 54/92 (58.70%), Postives = 70/92 (76.09%), Query Frame = 0


Query: 2  GSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIET 61
          GSG  W+AK+NK FE ALA+YDKDTP+RW N+ARAV G+T EEVK+HYE LVED+  IE+
Sbjct: 6  GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIES 65

Query: 62 GQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL 94
          G+VPFPNYR +G   +       E+R R+L++
Sbjct: 66 GKVPFPNYRTTGGNMK-----TDEKRFRNLKI 92

[Close]

BLAST of Cmc04g0093071 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.0e-25
Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 2   GSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIET 61
           GSGS WT KQNK FE ALA+YD+DTP+RW N+ARAVGGKT EE KR Y+ LV D+  IE 
Sbjct: 10  GSGS-WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIEN 69

Query: 62  GQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL 94
           G VPFP+Y+ +   +      D+E+RMRS++L
Sbjct: 70  GHVPFPDYKTTTGNSNRGRLRDEEKRMRSMKL 100

[Close]

BLAST of Cmc04g0093071 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.0e-24
Identity = 48/73 (65.75%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60
          M S ++WT K+NK+FE ALA YD+DTP+RW N+ARAVGGK+AEEV+RHYE L+ DVN IE
Sbjct: 6  MSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDVNDIE 65

Query: 61 TGQVPFPNYRRSG 74
          +G+ P PNYR +G
Sbjct: 66 SGRYPHPNYRSNG 78

[Close]

BLAST of Cmc04g0093071 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.9e-23
Identity = 51/89 (57.30%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 5  SNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQV 64
          S WT  QNK+FE ALA+YDKDTP+RW N+A+AVGGKT EEVKRHY+ LVED+  IETG+V
Sbjct: 10 SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRV 69

Query: 65 PFPNYRRSGPAARGFCFLDQEQRMRSLQL 94
          P PNY+     +R     D  ++M++L++
Sbjct: 70 PLPNYKTFESNSRSINDFD-TRKMKNLKI 97

[Close]

BLAST of Cmc04g0093071 vs. ExPASy TrEMBL
Match: A0A0A0LGK8 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G857030 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 4.9e-45
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60
          MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN 95
          TGQVPFPNYRRS PAARGF FLDQEQRMRSLQLN
Sbjct: 61 TGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN 94

[Close]

BLAST of Cmc04g0093071 vs. ExPASy TrEMBL
Match: A0A5D3D7Z0 (Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00440 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 7.8e-43
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60
          MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYERLVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSGPAARGFCFLDQEQR 88
          TGQVPFPNYRRSGPAARGFCFLDQEQR
Sbjct: 61 TGQVPFPNYRRSGPAARGFCFLDQEQR 87

[Close]

BLAST of Cmc04g0093071 vs. ExPASy TrEMBL
Match: A0A1S3CPA0 (protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103503253 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 7.8e-43
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60
          MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYERLVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSGPAARGFCFLDQEQR 88
          TGQVPFPNYRRSGPAARGFCFLDQEQR
Sbjct: 61 TGQVPFPNYRRSGPAARGFCFLDQEQR 87

[Close]

BLAST of Cmc04g0093071 vs. ExPASy TrEMBL
Match: A0A6J1CC55 (protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111009358 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.3e-39
Identity = 80/95 (84.21%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1   MGS-GSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKI 60
           MGS GSNWTAKQNKVFENALA+YDKDTP+RW NLARAVGGKTAEEVKRHYERLV+DVNKI
Sbjct: 26  MGSGGSNWTAKQNKVFENALAVYDKDTPDRWHNLARAVGGKTAEEVKRHYERLVDDVNKI 85

Query: 61  ETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN 95
           ETGQVPFPNYR+S    RGFCF+D+E+RMRSL+L+
Sbjct: 86  ETGQVPFPNYRKSAHGPRGFCFIDEEKRMRSLRLH 120

[Close]

BLAST of Cmc04g0093071 vs. ExPASy TrEMBL
Match: A0A6J1FM85 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111446496 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.4e-37
Identity = 77/94 (81.91%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60
          M SGS WTAKQNK+FENALAIYD+DTPERW NLARAVGGKTAEEVKRHYE LVEDVNKIE
Sbjct: 1  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN 95
          +GQVPFP Y +S PA  GF F+D+EQRMRSLQL+
Sbjct: 61 SGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH 94

[Close]

BLAST of Cmc04g0093071 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 124.8 bits (312), Expect = 3.7e-29
Identity = 58/91 (63.74%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 3  SGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETG 62
          S  +WTAKQNK FE ALA YD+DTP RWQN+A+ VGGKT EEVKRHYE LV+D+N IE G
Sbjct: 10 SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENG 69

Query: 63 QVPFPNYRRSGPAARGFCFLDQEQRMRSLQL 94
           VPFPNYR SG    G     +E+RMR+++L
Sbjct: 70 HVPFPNYRTSGGCTNG-RLSQEEKRMRNMRL 99

[Close]

BLAST of Cmc04g0093071 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 114.4 bits (285), Expect = 5.0e-26
Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 2   GSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIET 61
           GSGS WT KQNK FE ALA+YD+DTP+RW N+ARAVGGKT EE KR Y+ LV D+  IE 
Sbjct: 10  GSGS-WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIEN 69

Query: 62  GQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL 94
           G VPFP+Y+ +   +      D+E+RMRS++L
Sbjct: 70  GHVPFPDYKTTTGNSNRGRLRDEEKRMRSMKL 100

[Close]

BLAST of Cmc04g0093071 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 108.6 bits (270), Expect = 2.7e-24
Identity = 51/89 (57.30%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 5  SNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQV 64
          S WT  QNK+FE ALA+YDKDTP+RW N+A+AVGGKT EEVKRHY+ LVED+  IETG+V
Sbjct: 10 SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRV 69

Query: 65 PFPNYRRSGPAARGFCFLDQEQRMRSLQL 94
          P PNY+     +R     D  ++M++L++
Sbjct: 70 PLPNYKTFESNSRSINDFD-TRKMKNLKI 97

[Close]

BLAST of Cmc04g0093071 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 106.7 bits (265), Expect = 1.0e-23
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 0


Query: 5  SNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQV 64
          S WT  QNK+FE ALA+YDKDTP+RW N+A+AVGGKT EEVKRHY+ LVED+  IETG+V
Sbjct: 10 SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRV 69

Query: 65 PFPNYR 71
          P PNY+
Sbjct: 70 PLPNYK 75

[Close]

BLAST of Cmc04g0093071 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 105.9 bits (263), Expect = 1.8e-23
Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60
          M S S+WT+KQNK+FE ALA+YDKDTP+RWQN+A+AVG K+AEEVKRHY+ LVED+  IE
Sbjct: 6  MSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMNIE 65

Query: 61 TGQVPFPNYR 71
             VP P Y+
Sbjct: 66 QDLVPLPKYK 75

The following BLAST results are available for this feature:

BLAST of Cmc04g0093071 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147867.1	1.0e-44	97.87	protein RADIALIS-like 3 [Cucumis sativus] >KGN59962.1 hypothetical protein Csa_0...	[more]
XP_038905673.1	1.1e-43	92.55	protein RADIALIS-like 3 [Benincasa hispida]	[more]
XP_008465612.1	1.6e-42	98.85	PREDICTED: protein RADIALIS-like 3 [Cucumis melo] >KAA0041605.1 protein RADIALIS...	[more]
XP_022138113.1	4.8e-39	84.21	protein RADIALIS-like 3 [Momordica charantia]	[more]
XP_022941099.1	1.3e-36	81.91	protein RADIALIS-like 3 [Cucurbita moschata] >XP_023525029.1 protein RADIALIS-li...	[more]

BLAST of Cmc04g0093071 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	5.2e-28	63.74	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q58FS3	4.1e-25	58.70	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q9SIJ5	7.0e-25	58.70	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q6NNN0	6.0e-24	65.75	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q1A173	3.9e-23	57.30	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]

BLAST of Cmc04g0093071 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGK8	4.9e-45	97.87	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G857030 PE=4 S...	[more]
A0A5D3D7Z0	7.8e-43	98.85	Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CPA0	7.8e-43	98.85	protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103503253 PE=4 SV=1	[more]
A0A6J1CC55	2.3e-39	84.21	protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111009358 PE=4 SV=1	[more]
A0A6J1FM85	6.4e-37	81.91	protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111446496 PE=4 SV=1	[more]

BLAST of Cmc04g0093071 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	3.7e-29	63.74	RAD-like 1	[more]
AT2G21650.1	5.0e-26	58.70	Homeodomain-like superfamily protein	[more]
AT1G75250.2	2.7e-24	57.30	RAD-like 6	[more]
AT1G75250.1	1.0e-23	71.21	RAD-like 6	[more]
AT1G19510.1	1.8e-23	67.14	RAD-like 5	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 3..55 e-value: 3.8E-7 score: 39.8
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 5..53 score: 6.306941
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 6..53 e-value: 1.55843E-6 score: 39.481
None	No IPR available	GENE3D	1.10.10.60		coord: 1..66 e-value: 2.4E-24 score: 86.9
None	No IPR available	PANTHER	PTHR43952:SF52	MYB FAMILY TRANSCRIPTION FACTOR	coord: 1..93
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..93
IPR017884	SANT domain	PROSITE	PS51293	SANT	coord: 2..57 score: 10.223239
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 6..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0093071.1	Cmc04g0093071.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity