Cmc04g0090861 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0090861
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Histone deacetylase 18-like protein
Location	CMiso1.1chr04: 2989637 .. 2990466 (-)
RNA-Seq Expression	Cmc04g0090861
Synteny	Cmc04g0090861

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATCCATCCCTATATATACAACAATCATCTCTTCGGCTCCTCTGTTTTTGTATCAAATTAAAACTAGAGGTAATGGCTTTAACAATCAACTGTTCATCTTCTTCAGTTTTTCTCCTTCCTCAACCTCCCCATCTGAATTCCTTCGATTCTACAAAAACCGCTAAATTACCTCTATAAGTCTTGATCAAATTACAACTCAATCGATCTCTACCGATTCTATGACGAATCGAGGTCTGTTTCAGTACTGTTTTTATTTTATTATTTTTGTTTTTTTTTTTCATCTTTCGATTTCTCGATTAACTTCAGGAAAGAAGATGGAGGATCATGGAGAAGTCGAAGCGTATGCGCTTTAGGTTTAGCGAGTTTGATTTTCGCAATCGAAATCAGCGACGTCTTCATTGCTAGTGAATCTCTTGCTCTGGAATCGTCGCCGCAACTTGTGGATTATTATTCACGGAGGCGTATGAAGAAGATACCGAGATGGAGTGATAAGATTAGAAAATGCGCTCCATGGCGAGCGAAATCGTTGGAGATCATCGTGCCGGAGAATCTCCCGAGGCCGTCACAGCGTCGGAAGTGGGAAGCCATTGCATATGAATTCATAGATATGAAGAAGAACGCTCCGGGAGTTCAAGTAATTTCTTCTGAAATTAGCTCTGATTACTGTTTCTCCTTGTAAATTTGTATGGCTTTTATTTTGTAAATCGTTGTATCAATCAATCACATCAATGGCTACATTGTTAATATTGCTTTTGATGTTCATCTTATTTCGTATCAATCAAATCCGATGTTCGTTTATTGATGAACATATCTTAGGATTGGAAAATTG

mRNA sequence

CCATCCATCCCTATATATACAACAATCATCTCTTCGGCTCCTCTGTTTTTGTATCAAATTAAAACTAGAGGTAATGGCTTTAACAATCAACTGTTCATCTTCTTCAGTTTTTCTCCTTCCTCAACCTCCCCATCTGAATTCCTTCGATTCTACAAAAACCGCTAAATTACCTCTATAAGTCTTGATCAAATTACAACTCAATCGATCTCTACCGATTCTATGACGAATCGAGGAAAGAAGATGGAGGATCATGGAGAAGTCGAAGCGTATGCGCTTTAGGTTTAGCGAGTTTGATTTTCGCAATCGAAATCAGCGACGTCTTCATTGCTAGTGAATCTCTTGCTCTGGAATCGTCGCCGCAACTTGTGGATTATTATTCACGGAGGCGTATGAAGAAGATACCGAGATGGAGTGATAAGATTAGAAAATGCGCTCCATGGCGAGCGAAATCGTTGGAGATCATCGTGCCGGAGAATCTCCCGAGGCCGTCACAGCGTCGGAAGTGGGAAGCCATTGCATATGAATTCATAGATATGAAGAAGAACGCTCCGGGAGTTCAAGTAATTTCTTCTGAAATTAGCTCTGATTACTGTTTCTCCTTGTAAATTTGTATGGCTTTTATTTTGTAAATCGTTGTATCAATCAATCACATCAATGGCTACATTGTTAATATTGCTTTTGATGTTCATCTTATTTCGTATCAATCAAATCCGATGTTCGTTTATTGATGAACATATCTTAGGATTGGAAAATTG

Coding sequence (CDS)

ATGAAGAAGATACCGAGATGGAGTGATAAGATTAGAAAATGCGCTCCATGGCGAGCGAAATCGTTGGAGATCATCGTGCCGGAGAATCTCCCGAGGCCGTCACAGCGTCGGAAGTGGGAAGCCATTGCATATGAATTCATAGATATGAAGAAGAACGCTCCGGGAGTTCAAGTAATTTCTTCTGAAATTAGCTCTGATTACTGTTTCTCCTTGTAA

Protein sequence

MKKIPRWSDKIRKCAPWRAKSLEIIVPENLPRPSQRRKWEAIAYEFIDMKKNAPGVQVISSEISSDYCFSL

Homology

[Close]

BLAST of Cmc04g0090861 vs. NCBI nr
Match: KAA0038795.1 (uncharacterized protein E6C27_scaffold92G003500 [Cucumis melo var. makuwa] >TYK31416.1 uncharacterized protein E5676_scaffold455G007250 [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 3.7e-31
Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1   MKKIPRWSDKIRKCAPWRAKSLEIIVPENLPRPSQRRKWEAIAYEFIDMKKNAPGVQVIS 60
           MKKIPRWSD+IRKCAPWRAKSLEIIVPENLPRPSQRRK EAIAYEFIDMKKNAPGVQVIS
Sbjct: 87  MKKIPRWSDEIRKCAPWRAKSLEIIVPENLPRPSQRRKCEAIAYEFIDMKKNAPGVQVIS 146

Query: 61  SEISSDYCFSL 72
           SEISSDYCFSL
Sbjct: 147 SEISSDYCFSL 157

[Close]

BLAST of Cmc04g0090861 vs. NCBI nr
Match: XP_004136339.1 (uncharacterized protein LOC101204764 [Cucumis sativus] >KGN60120.1 hypothetical protein Csa_001027 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 1.9e-24
Identity = 63/74 (85.14%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 1   MKKIPRWSDKIRKCAPWRAKSLEIIVPENLPRPSQRRKWEAIAY-EFIDMKKNA-PGVQV 60
           MKKI RWSDKIRKCAPWRA SLEIIVPENLPR SQRRKWE IAY EFID+KKNA PG+QV
Sbjct: 90  MKKISRWSDKIRKCAPWRANSLEIIVPENLPRASQRRKWEGIAYNEFIDVKKNAPPGIQV 149

Query: 61  ISSEISSD-YCFSL 72
            +SEISSD YCFSL
Sbjct: 150 SASEISSDNYCFSL 163

[Close]

BLAST of Cmc04g0090861 vs. NCBI nr
Match: XP_038899075.1 (uncharacterized protein LOC120086473 [Benincasa hispida])

HSP 1 Score: 113.2 bits (282), Expect = 9.0e-22
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 3   KIPRWSDKIRKCAPWRAKSLEIIVPENLPRPSQRRKWEAIAYEFIDMKKNAPGVQVISSE 62
           KI RWSDK RKCAPWRA SLE IVPENLPRPS RRKWEAIAYE +D+ KNAPG++VISS+
Sbjct: 87  KISRWSDK-RKCAPWRANSLEFIVPENLPRPSHRRKWEAIAYESMDV-KNAPGIRVISSK 146

Query: 63  ISSDYCFSL 72
            SS+YCFSL
Sbjct: 147 TSSNYCFSL 153

[Close]

BLAST of Cmc04g0090861 vs. NCBI nr
Match: XP_022138217.1 (uncharacterized protein LOC111009442 isoform X1 [Momordica charantia])

HSP 1 Score: 104.8 bits (260), Expect = 3.2e-19
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 3   KIPRWSDKIRKCAPWRAKSLEIIVPENLPRPSQRRKWEAIAYEFIDMKKNAPGVQVISSE 62
           KI RWSDK RKCAPWRA SLE IVPENLPRPSQRRKWE + +  +D++ NAP +QVISSE
Sbjct: 84  KISRWSDK-RKCAPWRANSLENIVPENLPRPSQRRKWETVTFT-VDVETNAPAIQVISSE 143

Query: 63  ISSDYCFSL 72
            +S YCFSL
Sbjct: 144 TNSKYCFSL 150

[Close]

BLAST of Cmc04g0090861 vs. NCBI nr
Match: XP_023524416.1 (uncharacterized protein LOC111788320 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 103.2 bits (256), Expect = 9.3e-19
Identity = 52/69 (75.36%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 3   KIPRWSDKIRKCAPWRAKSLEIIVPENLPRPSQRRKWEAIAYEFIDMKKNAPGVQVISSE 62
           KI RWSDK RKCA WRA SLEIIVPENLPRPSQRRKWEAIA+  ++   NAP VQVISS+
Sbjct: 84  KISRWSDK-RKCAQWRANSLEIIVPENLPRPSQRRKWEAIAFTDVE---NAPAVQVISSK 143

Query: 63  ISSDYCFSL 72
             S YCFSL
Sbjct: 144 FGSKYCFSL 148

[Close]

BLAST of Cmc04g0090861 vs. ExPASy TrEMBL
Match: A0A5A7TBN7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007250 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.8e-31
Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1   MKKIPRWSDKIRKCAPWRAKSLEIIVPENLPRPSQRRKWEAIAYEFIDMKKNAPGVQVIS 60
           MKKIPRWSD+IRKCAPWRAKSLEIIVPENLPRPSQRRK EAIAYEFIDMKKNAPGVQVIS
Sbjct: 87  MKKIPRWSDEIRKCAPWRAKSLEIIVPENLPRPSQRRKCEAIAYEFIDMKKNAPGVQVIS 146

Query: 61  SEISSDYCFSL 72
           SEISSDYCFSL
Sbjct: 147 SEISSDYCFSL 157

[Close]

BLAST of Cmc04g0090861 vs. ExPASy TrEMBL
Match: A0A0A0LDQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G878890 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.4e-25
Identity = 63/74 (85.14%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 1   MKKIPRWSDKIRKCAPWRAKSLEIIVPENLPRPSQRRKWEAIAY-EFIDMKKNA-PGVQV 60
           MKKI RWSDKIRKCAPWRA SLEIIVPENLPR SQRRKWE IAY EFID+KKNA PG+QV
Sbjct: 90  MKKISRWSDKIRKCAPWRANSLEIIVPENLPRASQRRKWEGIAYNEFIDVKKNAPPGIQV 149

Query: 61  ISSEISSD-YCFSL 72
            +SEISSD YCFSL
Sbjct: 150 SASEISSDNYCFSL 163

[Close]

BLAST of Cmc04g0090861 vs. ExPASy TrEMBL
Match: A0A6J1CAG3 (uncharacterized protein LOC111009442 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009442 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-19
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 3   KIPRWSDKIRKCAPWRAKSLEIIVPENLPRPSQRRKWEAIAYEFIDMKKNAPGVQVISSE 62
           KI RWSDK RKCAPWRA SLE IVPENLPRPSQRRKWE + +  +D++ NAP +QVISSE
Sbjct: 84  KISRWSDK-RKCAPWRANSLENIVPENLPRPSQRRKWETVTFT-VDVETNAPAIQVISSE 143

Query: 63  ISSDYCFSL 72
            +S YCFSL
Sbjct: 144 TNSKYCFSL 150

[Close]

BLAST of Cmc04g0090861 vs. ExPASy TrEMBL
Match: A0A6J1FJG9 (uncharacterized protein LOC111446015 OS=Cucurbita moschata OX=3662 GN=LOC111446015 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.3e-18
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 3   KIPRWSDKIRKCAPWRAKSLEIIVPENLPRPSQRRKWEAIAYEFIDMKKNAPGVQVISSE 62
           KI RWSDK RKCA WRA SLEIIVPENLPRPSQRRKWE IA+  ++   NAP VQVISS+
Sbjct: 98  KISRWSDK-RKCAQWRANSLEIIVPENLPRPSQRRKWETIAFTDVE---NAPAVQVISSK 157

Query: 63  ISSDYCFSL 72
             S YCFSL
Sbjct: 158 FGSKYCFSL 162

[Close]

BLAST of Cmc04g0090861 vs. ExPASy TrEMBL
Match: A0A6J1CAH3 (uncharacterized protein LOC111009442 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111009442 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.8e-13
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 3   KIPRWSDKIRKCAPWRAKSLEIIVPENLPRPSQRRKWEAIAYEFIDMKKNAPGVQ 58
           KI RWSDK RKCAPWRA SLE IVPENLPRPSQRRKWE + +  +D++ NAP +Q
Sbjct: 84  KISRWSDK-RKCAPWRANSLENIVPENLPRPSQRRKWETVTFT-VDVETNAPAIQ 136

[Close]

BLAST of Cmc04g0090861 vs. TAIR 10
Match: AT2G25625.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 8.5e-10
Identity = 32/66 (48.48%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 6   RWSDKIRKCAPWRAKSLEIIVPENLPRPSQRRKWEAIAYEFIDMKKNAPGVQVISSEISS 65
           RWSDK R C PW   SLE IVPENLPRPS  R+ E         K +AP V V+ + ++ 
Sbjct: 91  RWSDK-RTCPPWLENSLETIVPENLPRPSAHRRLELAGL----AKGDAPPVGVVMTRVNR 150

Query: 66  DYCFSL 72
             CFS+
Sbjct: 151 GGCFSV 151

[Close]

BLAST of Cmc04g0090861 vs. TAIR 10
Match: AT2G25625.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 8.5e-10
Identity = 32/66 (48.48%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 6   RWSDKIRKCAPWRAKSLEIIVPENLPRPSQRRKWEAIAYEFIDMKKNAPGVQVISSEISS 65
           RWSDK R C PW   SLE IVPENLPRPS  R+ E         K +AP V V+ + ++ 
Sbjct: 92  RWSDK-RTCPPWLENSLETIVPENLPRPSAHRRLELAGL----AKGDAPPVGVVMTRVNR 151

Query: 66  DYCFSL 72
             CFS+
Sbjct: 152 GGCFSV 152

The following BLAST results are available for this feature:

BLAST of Cmc04g0090861 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038795.1	3.7e-31	97.18	uncharacterized protein E6C27_scaffold92G003500 [Cucumis melo var. makuwa] >TYK3...	[more]
XP_004136339.1	1.9e-24	85.14	uncharacterized protein LOC101204764 [Cucumis sativus] >KGN60120.1 hypothetical ...	[more]
XP_038899075.1	9.0e-22	79.71	uncharacterized protein LOC120086473 [Benincasa hispida]	[more]
XP_022138217.1	3.2e-19	72.46	uncharacterized protein LOC111009442 isoform X1 [Momordica charantia]	[more]
XP_023524416.1	9.3e-19	75.36	uncharacterized protein LOC111788320 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cmc04g0090861 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc04g0090861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TBN7	1.8e-31	97.18	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LDQ8	9.4e-25	85.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G878890 PE=4 SV=1	[more]
A0A6J1CAG3	1.6e-19	72.46	uncharacterized protein LOC111009442 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1FJG9	1.3e-18	73.91	uncharacterized protein LOC111446015 OS=Cucurbita moschata OX=3662 GN=LOC1114460...	[more]
A0A6J1CAH3	2.8e-13	70.91	uncharacterized protein LOC111009442 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Cmc04g0090861 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G25625.2	8.5e-10	48.48	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G25625.1	8.5e-10	48.48	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37210:SF2	EXPRESSED PROTEIN	coord: 2..71
None	No IPR available	PANTHER	PTHR37210	EXPRESSED PROTEIN	coord: 2..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0090861.1	Cmc04g0090861.1	mRNA