Cmc04g0090231 (gene) Melon (Charmono) v1.1

Overview
NameCmc04g0090231
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionFarnesyl diphosphate synthase 2
LocationCMiso1.1chr04: 2411017 .. 2412024 (-)
RNA-Seq ExpressionCmc04g0090231
SyntenyCmc04g0090231
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTTCACACCAAGCATACCTGTTTGTTGATACTCTGGATCAATGTAGCAAAATGTTCCAGCAGTTGATGTCATTCGGTATTGTGTTACGCTATCAGCAATCGATGGTGGTACAAGCCGAGCCAACCCAACATCACTGATCTTACTGACGAAGTTACGATCAAGAAGGATGTTAGCTGGTTTCAGATCACGATGCACAAGAGGCTCTGGCTTTGTTTGGTGCAAGAACAACAATGCTGTTCCAATTTCAGCTGCAATTTTAAACCTTAGTTGCCACGAAAGTGGAGGCGTGTTTCCTCGTCGTAGAAGCCGGTCTTCTAAGCTTCCATTAGCCATGAACTCATACACCAAGCAGCCGTACTCGGGGCAAGCTCCGAGGAGGAGAACCATGTTTGGATGGCGTATACAGCTGAGTACTTCTACCTGTATGAAATGTTATGTTTATTTTTCTTGTCATCAAATAAAGTTGCATATGGTTCTAATTTCCAAAAAATTGTACAGTTCTATTCATTTTGACAAGATTGGCTTAGACATTAGAAATTGTTGGCTTGAGAGTTATGTTTGGTAACAAACCTCTTGTTTAAACTGTGATCGTCCTTGAGTCGCATCGGGACGTAGAACCTTAATGGCAACAGGAGTATGATCAAGATCACACTTGTAAACAGGACCATACCCTCCTTCTCCAATCCTACGGGATTCGGAGAAGAATTCTGTTGCTGCTTCGATCTCCTCGATCGTATACTTTCTATACCTGATATTATCTGTTTGTGCCAATGCATCAAATGCCTTTTTCTTCTCTTCAGCTTCTTTGAGTGCTTTCATTTCAGCCTTCATTCTTTTCTGTGCTTCTAATTCTGCAATTCTTCTTGCTGCTTCAGCTGCTTCGACGGCTGCTTTCGACTTGGCCTTCTCTTGTTCGGCTAGTGCCAATGCAGCTTCCCCCGCCAATCTCGCCTCTTCTAATCTTTGTTCTTCTTCCAATTTCCAGCGTTGTAACTCGACCGCCTGC

mRNA sequence

GATTTCACACCAAGCATACCTGTTTGTTGATACTCTGGATCAATGTAGCAAAATGTTCCAGCAGTTGATGTCATTCGGTATTGTGTTACGCTATCAGCAATCGATGGTGGTACAAGCCGAGCCAACCCAACATCACTGATCTTACTGACGAAGTTACGATCAAGAAGGATGTTAGCTGGTTTCAGATCACGATGCACAAGAGGCTCTGGCTTTGTTTGGTGCAAGAACAACAATGCTGTTCCAATTTCAGCTGCAATTTTAAACCTTAGTTGCCACGAAAGTGGAGGCGTGTTTCCTCGTCGTAGAAGCCGGTCTTCTAAGCTTCCATTAGCCATGAACTCATACACCAAGCAGCCGTACTCGGGGCAAGCTCCGAGGAGGAGAACCATGTTTGGATGGCGTATACACTGCTTCGACGGCTGCTTTCGACTTGGCCTTCTCTTGTTCGGCTAGTGCCAATGCAGCTTCCCCCGCCAATCTCGCCTCTTCTAATCTTTGTTCTTCTTCCAATTTCCAGCGTTGTAACTCGACCGCCTGC

Coding sequence (CDS)

ATGTTAGCTGGTTTCAGATCACGATGCACAAGAGGCTCTGGCTTTGTTTGGTGCAAGAACAACAATGCTGTTCCAATTTCAGCTGCAATTTTAAACCTTAGTTGCCACGAAAGTGGAGGCGTGTTTCCTCGTCGTAGAAGCCGGTCTTCTAAGCTTCCATTAGCCATGAACTCATACACCAAGCAGCCGTACTCGGGGCAAGCTCCGAGGAGGAGAACCATGTTTGGATGGCGTATACACTGCTTCGACGGCTGCTTTCGACTTGGCCTTCTCTTGTTCGGCTAG

Protein sequence

MLAGFRSRCTRGSGFVWCKNNNAVPISAAILNLSCHESGGVFPRRRSRSSKLPLAMNSYTKQPYSGQAPRRRTMFGWRIHCFDGCFRLGLLLFG
Homology
BLAST of Cmc04g0090231 vs. NCBI nr
Match: BAT78266.1 (hypothetical protein VIGAN_02092000 [Vigna angularis var. angularis])

HSP 1 Score: 121.3 bits (303), Expect = 4.4e-24
Identity = 57/79 (72.15%), Postives = 64/79 (81.01%), Query Frame = 0

Query: 1  MLAGFRSRCTRGSGFVWCKNNNAVPISAAILNLSCHESGGVFPRRRSRSSKLPLAMNSYT 60
          MLAGF+S CTRGSGFVWC+N+  VPISAAILNLSC  SGGV P R+ RSSKLP A+ SYT
Sbjct: 1  MLAGFKSLCTRGSGFVWCRNSKPVPISAAILNLSCQGSGGVLPCRKRRSSKLPFAIYSYT 60

Query: 61 KQPYSGQAPRRRTMFGWRI 80
          + PYSG APR RTM G R+
Sbjct: 61 RHPYSGHAPRSRTMCGCRM 79

BLAST of Cmc04g0090231 vs. NCBI nr
Match: RDX88994.1 (hypothetical protein CR513_29332, partial [Mucuna pruriens])

HSP 1 Score: 115.9 bits (289), Expect = 1.8e-22
Identity = 55/74 (74.32%), Postives = 60/74 (81.08%), Query Frame = 0

Query: 1  MLAGFRSRCTRGSGFVWCKNNNAVPISAAILNLSCHESGGVFPRRRSRSSKLPLAMNSYT 60
          MLAG RS CTRGSGFVW +NN  VPISAAILNLSCH  GG+FP    +SSKLP  M SYT
Sbjct: 1  MLAGLRSLCTRGSGFVWWRNNKPVPISAAILNLSCHGIGGLFPLTNRQSSKLPFDMCSYT 60

Query: 61 KQPYSGQAPRRRTM 75
          +QPYSGQAPRRRT+
Sbjct: 61 RQPYSGQAPRRRTI 74

BLAST of Cmc04g0090231 vs. NCBI nr
Match: ACR35446.1 (unknown [Zea mays])

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-19
Identity = 52/80 (65.00%), Postives = 58/80 (72.50%), Query Frame = 0

Query: 1  MLAGFRSRCTRGSGFVWCKNNNAVPISAAILNLSCHESGGVFPRRRSR-SSKLPLAMNSY 60
          ML G RSRCT GSG  WC+N   V ISAA+ N  CH S G  P R +R SS+LPLAM SY
Sbjct: 1  MLPGLRSRCTSGSGLAWCRNRRPVAISAAMRNRCCHGSTGPPPPRWNRQSSRLPLAMYSY 60

Query: 61 TKQPYSGQAPRRRTMFGWRI 80
          T+QPYSGQAPRR TM GWR+
Sbjct: 61 TRQPYSGQAPRRSTMLGWRM 80

BLAST of Cmc04g0090231 vs. NCBI nr
Match: RYR57691.1 (hypothetical protein Ahy_A05g023392 [Arachis hypogaea])

HSP 1 Score: 87.8 bits (216), Expect = 5.4e-14
Identity = 48/82 (58.54%), Postives = 51/82 (62.20%), Query Frame = 0

Query: 1  MLAGFRSRCTRGSGFVWCKNNNAVPISAAILNLSCHESGGVFPRRRSRSSKLPLAMNSYT 60
          M  GF+SR           N   V ISAAI NLSC    G FPRRR +SSKLPL M SYT
Sbjct: 1  MFPGFKSR-----------NRRPVAISAAIWNLSCQGRAGNFPRRRRQSSKLPLVMYSYT 60

Query: 61 KQPYSGQAPRRRTMFGWRIHCF 83
          KQPYSG APRRRTMFG  I  +
Sbjct: 61 KQPYSGHAPRRRTMFGCLIQIY 71

BLAST of Cmc04g0090231 vs. NCBI nr
Match: PIN00376.1 (hypothetical protein CDL12_27119 [Handroanthus impetiginosus])

HSP 1 Score: 77.8 bits (190), Expect = 5.6e-11
Identity = 38/58 (65.52%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 1   MLAGFRSRCTRGSGFVWCKNNNAVPISAAILNLSCHESGGVFPRRRSRSSKLPLAMNS 59
           ML G RSR T+GSGFVW +  + V ISAAIL  SCHE G V PRR+ RSS+LPLAM S
Sbjct: 138 MLPGLRSRWTKGSGFVWWRKRSPVAISAAILKRSCHERGRVLPRRKRRSSRLPLAMYS 195

BLAST of Cmc04g0090231 vs. ExPASy TrEMBL
Match: A0A0S3RCK5 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G092000 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.1e-24
Identity = 57/79 (72.15%), Postives = 64/79 (81.01%), Query Frame = 0

Query: 1  MLAGFRSRCTRGSGFVWCKNNNAVPISAAILNLSCHESGGVFPRRRSRSSKLPLAMNSYT 60
          MLAGF+S CTRGSGFVWC+N+  VPISAAILNLSC  SGGV P R+ RSSKLP A+ SYT
Sbjct: 1  MLAGFKSLCTRGSGFVWCRNSKPVPISAAILNLSCQGSGGVLPCRKRRSSKLPFAIYSYT 60

Query: 61 KQPYSGQAPRRRTMFGWRI 80
          + PYSG APR RTM G R+
Sbjct: 61 RHPYSGHAPRSRTMCGCRM 79

BLAST of Cmc04g0090231 vs. ExPASy TrEMBL
Match: A0A371GEN0 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_29332 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 8.9e-23
Identity = 55/74 (74.32%), Postives = 60/74 (81.08%), Query Frame = 0

Query: 1  MLAGFRSRCTRGSGFVWCKNNNAVPISAAILNLSCHESGGVFPRRRSRSSKLPLAMNSYT 60
          MLAG RS CTRGSGFVW +NN  VPISAAILNLSCH  GG+FP    +SSKLP  M SYT
Sbjct: 1  MLAGLRSLCTRGSGFVWWRNNKPVPISAAILNLSCHGIGGLFPLTNRQSSKLPFDMCSYT 60

Query: 61 KQPYSGQAPRRRTM 75
          +QPYSGQAPRRRT+
Sbjct: 61 RQPYSGQAPRRRTI 74

BLAST of Cmc04g0090231 vs. ExPASy TrEMBL
Match: C4J2P6 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.2e-20
Identity = 52/80 (65.00%), Postives = 58/80 (72.50%), Query Frame = 0

Query: 1  MLAGFRSRCTRGSGFVWCKNNNAVPISAAILNLSCHESGGVFPRRRSR-SSKLPLAMNSY 60
          ML G RSRCT GSG  WC+N   V ISAA+ N  CH S G  P R +R SS+LPLAM SY
Sbjct: 1  MLPGLRSRCTSGSGLAWCRNRRPVAISAAMRNRCCHGSTGPPPPRWNRQSSRLPLAMYSY 60

Query: 61 TKQPYSGQAPRRRTMFGWRI 80
          T+QPYSGQAPRR TM GWR+
Sbjct: 61 TRQPYSGQAPRRSTMLGWRM 80

BLAST of Cmc04g0090231 vs. ExPASy TrEMBL
Match: A0A445D3I2 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A05g023392 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.6e-14
Identity = 48/82 (58.54%), Postives = 51/82 (62.20%), Query Frame = 0

Query: 1  MLAGFRSRCTRGSGFVWCKNNNAVPISAAILNLSCHESGGVFPRRRSRSSKLPLAMNSYT 60
          M  GF+SR           N   V ISAAI NLSC    G FPRRR +SSKLPL M SYT
Sbjct: 1  MFPGFKSR-----------NRRPVAISAAIWNLSCQGRAGNFPRRRRQSSKLPLVMYSYT 60

Query: 61 KQPYSGQAPRRRTMFGWRIHCF 83
          KQPYSG APRRRTMFG  I  +
Sbjct: 61 KQPYSGHAPRRRTMFGCLIQIY 71

BLAST of Cmc04g0090231 vs. ExPASy TrEMBL
Match: A0A2G9G4Y3 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_27119 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.7e-11
Identity = 38/58 (65.52%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 1   MLAGFRSRCTRGSGFVWCKNNNAVPISAAILNLSCHESGGVFPRRRSRSSKLPLAMNS 59
           ML G RSR T+GSGFVW +  + V ISAAIL  SCHE G V PRR+ RSS+LPLAM S
Sbjct: 138 MLPGLRSRWTKGSGFVWWRKRSPVAISAAILKRSCHERGRVLPRRKRRSSRLPLAMYS 195

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
BAT78266.14.4e-2472.15hypothetical protein VIGAN_02092000 [Vigna angularis var. angularis][more]
RDX88994.11.8e-2274.32hypothetical protein CR513_29332, partial [Mucuna pruriens][more]
ACR35446.11.9e-1965.00unknown [Zea mays][more]
RYR57691.15.4e-1458.54hypothetical protein Ahy_A05g023392 [Arachis hypogaea][more]
PIN00376.15.6e-1165.52hypothetical protein CDL12_27119 [Handroanthus impetiginosus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0S3RCK52.1e-2472.15Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G... [more]
A0A371GEN08.9e-2374.32Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_29332 P... [more]
C4J2P69.2e-2065.00Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1[more]
A0A445D3I22.6e-1458.54Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A05g023392 PE=4 SV=1[more]
A0A2G9G4Y32.7e-1165.52Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_27119 P... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc04g0090231.1Cmc04g0090231.1mRNA