Cmc04g0088341 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0088341
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	GTPase
Location	CMiso1.1chr04: 949221 .. 950895 (+)
RNA-Seq Expression	Cmc04g0088341
Synteny	Cmc04g0088341

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCAATGGCTTCATTCTATCCACCACTTCTTCGTATGATTCTTCTCAAGCCATACCTGAAAAATACGAATGGGAGAATCTCAATAACGCCATATATGAACTTGAAGAAAGGGTCAAGAAAGAACCATACATGTTGTCAAGTTACATTAAGGGAAGTCAAGTGAGATGAAACTTTTATCTATGGAACAAATGCTTCGAGTGGGGCTTCATAACTCTTCAATGGTTACGAAAATATGGTTGGCTGATTTAAAAAAAAAAAATAGATTTATGGTGTAACGTATTTTAGGTTTTAAGTCTTTTTATGTGATTTTTATGTTACATCCTCACAATGGTTGATTATCATTTATCGTCATAAATTTAGAAGGTTGGATTTTATTTTGAAGCTATGTAATTTGAATCAAGACATGAAAAATGTGGAAATGTAGAATTTTGGATTTTAAACATTGAAAGGTCTTAAGATTTGTGTTTGTGATAGAATGCAAGAATACTTTTAGCATTCAAATGATGATTGTTCTATCTTGCTTGTAGAGTGCTTGAAGATCACGGTTTGATGGAAGTTTCAAGTTTTGATTGGTACTTGGTTAATTGACTAAGTAATCAGTAATCTAATTTATCTTAGGGTTGAGATCAATTATTTTTGGGACTGTGGGGGTTGAGTTTTTTTAATCTTGTTGTTCAACATTGTTTTTACATCTGATGCTCATGAGTCAAGGGTTTCTTATCATTTTGATATTGGGATTTCTTTGATTTCCTATCAATGTCCAAGAACTTCGAACATTGCATTTGCCAATTCTGATTTAGAAAGGACATTGTAGCGTTGACTTCTCCATAAAGTAACCACAATTCCATAAGAACTTTAGGACTACCAGTATTATATTTCTGCTAGTACGAATTAGTTGTTATTCTTTAACTGCTAATTGAAAGCTCTTTTTCCTTACTGCAGACGAACCCGTGCCGTGTTTGACGTTACTGTGAAAGTTCATCAGACCATTCAGCGCCAAGACATAAAATTTGATAGGAATCTTGGTAGCTGGATTTCACGATGGCTTAATCGAAGCAAACCATCTGCTGAGACTCAAGAACATCCCAATGGCACTATGAATACAGGCATGAAAATGATAAAGAAGGTTTCTAACTCCTACTTGAAACATCGAGCCAGCACTCGAGCAGTGATTGGTCAAAAGTTCGATCAATATCTGTCTTCTACTTCATCAGTACATAGATGGCCTAAGCCTTTCTTCCCTACCATTGCAATGATCATGAGGCAGAGAAAGCCAGCTGGGATTGTGATTCAACACAGACAATTTAGCATTCGTGGCTCTCATGGATTGAAAACAAATGACAGAAGACGAAGATTCGATCATGGTATTCGAGAAGATATTATGCAATGGATGGTTCAAAATTAGATTAGAAGATGTTTTGTAGTTGTCTTCTCCTTGGAGACAAAATTATTTGACTTACAATGCAGTCTATCGTGTAGTGTTTAGTTTCCAGTTTTGAGCTTGGATGCAATAGAGAAGTTTGGAACATGTCATTGGAAGCCATTTCTTTGCTTTTGATTGACTTCTAAAGCTAATATTTAATTCTCAAATACTTACATTTTAGGTTTTTTTTTCAATATAACTTTGGAGGTGGGAAATTTTGAATCCATAAAAATGTCTACGGGGAAACAAAGA

mRNA sequence

GGCAATGGCTTCATTCTATCCACCACTTCTTCGTATGATTCTTCTCAAGCCATACCTGAAAAATACGAATGGGAGAATCTCAATAACGCCATATATGAACTTGAAGAAAGGGTCAAGAAAGAACCATACATGTTGTCAAGTTACATTAAGGGAAGTCAAGTGAGATGAAACTTTTATCTATGGAACAAATGCTTCGAGTGGGGCTTCATAACTCTTCAATGGTTACGAAAATATGGTTGGCTGATTTAAAAAAAAAAAATAGATTTATGGTGTAACGTATTTTAGGTTTTAAGTCTTTTTATGTGATTTTTATGTTACATCCTCACAATGGTTGATTATCATTTATCGTCATAAATTTAGAAGGTTGGATTTTATTTTGAAGCTATGTAATTTGAATCAAGACATGAAAAATGTGGAAATGTAGAATTTTGGATTTTAAACATTGAAAGGTCTTAAGATTTGTGTTTGTGATAGAATGCAAGAATACTTTTAGCATTCAAATGATGATTGTTCTATCTTGCTTGTAGAGTGCTTGAAGATCACGGTTTGATGGAAGTTTCAAGTTTTGATTGGTACTTGGTTAATTGACTAAGTAATCAGTAATCTAATTTATCTTAGGGTTGAGATCAATTATTTTTGGGACTGTGGGGGTTGAGTTTTTTTAATCTTGTTGTTCAACATTGTTTTTACATCTGATGCTCATGAGTCAAGGGTTTCTTATCATTTTGATATTGGGATTTCTTTGATTTCCTATCAATGTCCAAGAACTTCGAACATTGCATTTGCCAATTCTGATTTAGAAAGGACATTGTAGCGTTGACTTCTCCATAAAGTAACCACAATTCCATAAGAACTTTAGGACTACCAGTATTATATTTCTGCTAGTACGAATTAGTTGTTATTCTTTAACTGCTAATTGAAAGCTCTTTTTCCTTACTGCAGACGAACCCGTGCCGTGTTTGACGTTACTGTGAAAGTTCATCAGACCATTCAGCGCCAAGACATAAAATTTGATAGGAATCTTGGTAGCTGGATTTCACGATGGCTTAATCGAAGCAAACCATCTGCTGAGACTCAAGAACATCCCAATGGCACTATGAATACAGGCATGAAAATGATAAAGAAGGTTTCTAACTCCTACTTGAAACATCGAGCCAGCACTCGAGCAGTGATTGGTCAAAAGTTCGATCAATATCTGTCTTCTACTTCATCAGTACATAGATGGCCTAAGCCTTTCTTCCCTACCATTGCAATGATCATGAGGCAGAGAAAGCCAGCTGGGATTGTGATTCAACACAGACAATTTAGCATTCGTGGCTCTCATGGATTGAAAACAAATGACAGAAGACGAAGATTCGATCATGGTATTCGAGAAGATATTATGCAATGGATGGTTCAAAATTAGATTAGAAGATGTTTTGTAGTTGTCTTCTCCTTGGAGACAAAATTATTTGACTTACAATGCAGTCTATCGTGTAGTGTTTAGTTTCCAGTTTTGAGCTTGGATGCAATAGAGAAGTTTGGAACATGTCATTGGAAGCCATTTCTTTGCTTTTGATTGACTTCTAAAGCTAATATTTAATTCTCAAATACTTACATTTTAGGTTTTTTTTTCAATATAACTTTGGAGGTGGGAAATTTTGAATCCATAAAAATGTCTACGGGGAAACAAAGA

Coding sequence (CDS)

ATGAATACAGGCATGAAAATGATAAAGAAGGTTTCTAACTCCTACTTGAAACATCGAGCCAGCACTCGAGCAGTGATTGGTCAAAAGTTCGATCAATATCTGTCTTCTACTTCATCAGTACATAGATGGCCTAAGCCTTTCTTCCCTACCATTGCAATGATCATGAGGCAGAGAAAGCCAGCTGGGATTGTGATTCAACACAGACAATTTAGCATTCGTGGCTCTCATGGATTGAAAACAAATGACAGAAGACGAAGATTCGATCATGGTATTCGAGAAGATATTATGCAATGGATGGTTCAAAATTAG

Protein sequence

MNTGMKMIKKVSNSYLKHRASTRAVIGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKPAGIVIQHRQFSIRGSHGLKTNDRRRRFDHGIREDIMQWMVQN

Homology

[Close]

BLAST of Cmc04g0088341 vs. NCBI nr
Match: XP_008466006.1 (PREDICTED: uncharacterized protein LOC103503568 [Cucumis melo])

HSP 1 Score: 210.7 bits (535), Expect = 6.0e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MNTGMKMIKKVSNSYLKHRASTRAVIGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKP 60
           MNTGMKMIKKVSNSYLKHRASTRAVIGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKP
Sbjct: 96  MNTGMKMIKKVSNSYLKHRASTRAVIGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKP 155

Query: 61  AGIVIQHRQFSIRGSHGLKTNDRRRRFDHGIREDIMQWMVQN 103
           AGIVIQHRQFSIRGSHGLKTNDRRRRFDHGIREDIMQWMVQN
Sbjct: 156 AGIVIQHRQFSIRGSHGLKTNDRRRRFDHGIREDIMQWMVQN 197

[Close]

BLAST of Cmc04g0088341 vs. NCBI nr
Match: XP_004136200.1 (uncharacterized protein LOC101212537 [Cucumis sativus] >KGN60359.1 hypothetical protein Csa_001136 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 2.1e-48
Identity = 97/102 (95.10%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 1   MNTGMKMIKKVSNSYLKHRASTRAVIGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKP 60
           +NTGMKM+KKVSNSYLKHRASTRAVIGQKFDQYL+STSSVHRWPKPFFPTIAMIMRQRKP
Sbjct: 96  INTGMKMMKKVSNSYLKHRASTRAVIGQKFDQYLASTSSVHRWPKPFFPTIAMIMRQRKP 155

Query: 61  AGIVIQHRQFSIRGSHGLKTNDRRRRFDHGIREDIMQWMVQN 103
            GIVIQHRQFSI GSHGLKTNDRRRRFDHGIREDIMQWMVQN
Sbjct: 156 TGIVIQHRQFSICGSHGLKTNDRRRRFDHGIREDIMQWMVQN 197

[Close]

BLAST of Cmc04g0088341 vs. NCBI nr
Match: XP_038888705.1 (uncharacterized protein LOC120078506 [Benincasa hispida])

HSP 1 Score: 181.4 bits (459), Expect = 3.9e-42
Identity = 88/102 (86.27%), Postives = 95/102 (93.14%), Query Frame = 0


Query: 1   MNTGMKMIKKVSNSYLKHRASTRAVIGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKP 60
           +NTGMKMIKKVSNSYLKH+ S+RAVIG+KFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKP
Sbjct: 96  INTGMKMIKKVSNSYLKHQTSSRAVIGRKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKP 155

Query: 61  AGIVIQHRQFSIRGSHGLKTNDRRRRFDHGIREDIMQWMVQN 103
           AG + Q+RQFSI GS GLKTN RRR FDHGIREDIMQWM+QN
Sbjct: 156 AGTLNQYRQFSICGSDGLKTNYRRRSFDHGIREDIMQWMLQN 197

[Close]

BLAST of Cmc04g0088341 vs. NCBI nr
Match: KAG6571645.1 (hypothetical protein SDJN03_28373, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157.5 bits (397), Expect = 6.0e-35
Identity = 78/101 (77.23%), Postives = 87/101 (86.14%), Query Frame = 0


Query: 2   NTGMKMIKKVSNSYLKHRASTRAVIGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKPA 61
           NTGMKMIK+VSNSY+KHRASTRA IGQK D+YLS TSSVH WPK  FPTIAMIMRQRKPA
Sbjct: 96  NTGMKMIKQVSNSYMKHRASTRAAIGQKVDKYLSFTSSVHGWPKA-FPTIAMIMRQRKPA 155

Query: 62  GIVIQHRQFSIRGSHGLKTNDRRRRFDHGIREDIMQWMVQN 103
           G + QHRQFSI  S G+KTN RR RF+HGIR+DI QWM++N
Sbjct: 156 GTMNQHRQFSICSSEGMKTNYRRGRFEHGIRDDIKQWMIRN 195

[Close]

BLAST of Cmc04g0088341 vs. NCBI nr
Match: XP_022963557.1 (uncharacterized protein LOC111463851 [Cucurbita moschata])

HSP 1 Score: 157.5 bits (397), Expect = 6.0e-35
Identity = 78/101 (77.23%), Postives = 87/101 (86.14%), Query Frame = 0


Query: 2   NTGMKMIKKVSNSYLKHRASTRAVIGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKPA 61
           NTGMKMIK+VSNSY+KHRASTRA IGQK D+YLS TSSVH WPK  FPTIAMIMRQRKPA
Sbjct: 96  NTGMKMIKQVSNSYMKHRASTRAAIGQKVDKYLSFTSSVHGWPKA-FPTIAMIMRQRKPA 155

Query: 62  GIVIQHRQFSIRGSHGLKTNDRRRRFDHGIREDIMQWMVQN 103
           G + QHRQFSI  S G+KTN RR RF+HGIR+DI QWM++N
Sbjct: 156 GTMNQHRQFSICSSEGMKTNYRRGRFEHGIRDDIKQWMIRN 195

[Close]

BLAST of Cmc04g0088341 vs. ExPASy TrEMBL
Match: A0A1S3CRP2 (uncharacterized protein LOC103503568 OS=Cucumis melo OX=3656 GN=LOC103503568 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 2.9e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MNTGMKMIKKVSNSYLKHRASTRAVIGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKP 60
           MNTGMKMIKKVSNSYLKHRASTRAVIGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKP
Sbjct: 96  MNTGMKMIKKVSNSYLKHRASTRAVIGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKP 155

Query: 61  AGIVIQHRQFSIRGSHGLKTNDRRRRFDHGIREDIMQWMVQN 103
           AGIVIQHRQFSIRGSHGLKTNDRRRRFDHGIREDIMQWMVQN
Sbjct: 156 AGIVIQHRQFSIRGSHGLKTNDRRRRFDHGIREDIMQWMVQN 197

[Close]

BLAST of Cmc04g0088341 vs. ExPASy TrEMBL
Match: A0A0A0LH53 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901040 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.0e-48
Identity = 97/102 (95.10%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 1   MNTGMKMIKKVSNSYLKHRASTRAVIGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKP 60
           +NTGMKM+KKVSNSYLKHRASTRAVIGQKFDQYL+STSSVHRWPKPFFPTIAMIMRQRKP
Sbjct: 96  INTGMKMMKKVSNSYLKHRASTRAVIGQKFDQYLASTSSVHRWPKPFFPTIAMIMRQRKP 155

Query: 61  AGIVIQHRQFSIRGSHGLKTNDRRRRFDHGIREDIMQWMVQN 103
            GIVIQHRQFSI GSHGLKTNDRRRRFDHGIREDIMQWMVQN
Sbjct: 156 TGIVIQHRQFSICGSHGLKTNDRRRRFDHGIREDIMQWMVQN 197

[Close]

BLAST of Cmc04g0088341 vs. ExPASy TrEMBL
Match: A0A6J1HFJ9 (uncharacterized protein LOC111463851 OS=Cucurbita moschata OX=3662 GN=LOC111463851 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.9e-35
Identity = 78/101 (77.23%), Postives = 87/101 (86.14%), Query Frame = 0


Query: 2   NTGMKMIKKVSNSYLKHRASTRAVIGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKPA 61
           NTGMKMIK+VSNSY+KHRASTRA IGQK D+YLS TSSVH WPK  FPTIAMIMRQRKPA
Sbjct: 96  NTGMKMIKQVSNSYMKHRASTRAAIGQKVDKYLSFTSSVHGWPKA-FPTIAMIMRQRKPA 155

Query: 62  GIVIQHRQFSIRGSHGLKTNDRRRRFDHGIREDIMQWMVQN 103
           G + QHRQFSI  S G+KTN RR RF+HGIR+DI QWM++N
Sbjct: 156 GTMNQHRQFSICSSEGMKTNYRRGRFEHGIRDDIKQWMIRN 195

[Close]

BLAST of Cmc04g0088341 vs. ExPASy TrEMBL
Match: A0A6J1HU73 (uncharacterized protein LOC111466890 OS=Cucurbita maxima OX=3661 GN=LOC111466890 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34
Identity = 77/100 (77.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 2   NTGMKMIKKVSNSYLKHRASTRAVIGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKPA 61
           NTGMKMIK+VSNSY+KHRASTRA IGQK D+YLS TSSVHRWPK  FPTIAMI RQRKPA
Sbjct: 96  NTGMKMIKQVSNSYMKHRASTRAAIGQKVDKYLSFTSSVHRWPKA-FPTIAMITRQRKPA 155

Query: 62  GIVIQHRQFSIRGSHGLKTNDRRRRFDHGIREDIMQWMVQ 102
           G + QHRQFSI  S G+KTN RR RF+HGIR+DI QWM++
Sbjct: 156 GTMNQHRQFSICSSEGMKTNYRRGRFEHGIRDDIKQWMIR 194

[Close]

BLAST of Cmc04g0088341 vs. ExPASy TrEMBL
Match: A0A6J1DZV3 (uncharacterized protein LOC111025863 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111025863 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 9.7e-31
Identity = 72/100 (72.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 3   TGMKMIKKVSNSYLKHRASTRAVIGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKPAG 62
           TGMKMIK+VSNSYLKHRAS RAVI QKFDQY+S TSS+ RWPKP FPT AMIMRQ KPAG
Sbjct: 97  TGMKMIKQVSNSYLKHRASPRAVISQKFDQYMSITSSIRRWPKP-FPTFAMIMRQPKPAG 156

Query: 63  IVIQHRQFSIRGSHGLKTNDRRRRFDHGIREDIMQWMVQN 103
             IQ+RQ+SI GS  ++TN RR  FD  IREDI+QWM+++
Sbjct: 157 TKIQYRQYSICGSEAMETNYRRGSFDCVIREDILQWMLRS 195

The following BLAST results are available for this feature:

BLAST of Cmc04g0088341 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466006.1	6.0e-51	100.00	PREDICTED: uncharacterized protein LOC103503568 [Cucumis melo]	[more]
XP_004136200.1	2.1e-48	95.10	uncharacterized protein LOC101212537 [Cucumis sativus] >KGN60359.1 hypothetical ...	[more]
XP_038888705.1	3.9e-42	86.27	uncharacterized protein LOC120078506 [Benincasa hispida]	[more]
KAG6571645.1	6.0e-35	77.23	hypothetical protein SDJN03_28373, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022963557.1	6.0e-35	77.23	uncharacterized protein LOC111463851 [Cucurbita moschata]	[more]

BLAST of Cmc04g0088341 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc04g0088341 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CRP2	2.9e-51	100.00	uncharacterized protein LOC103503568 OS=Cucumis melo OX=3656 GN=LOC103503568 PE=...	[more]
A0A0A0LH53	1.0e-48	95.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901040 PE=4 SV=1	[more]
A0A6J1HFJ9	2.9e-35	77.23	uncharacterized protein LOC111463851 OS=Cucurbita moschata OX=3662 GN=LOC1114638...	[more]
A0A6J1HU73	1.1e-34	77.00	uncharacterized protein LOC111466890 OS=Cucurbita maxima OX=3661 GN=LOC111466890...	[more]
A0A6J1DZV3	9.7e-31	72.00	uncharacterized protein LOC111025863 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Cmc04g0088341 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35998	FAMILY NOT NAMED	coord: 4..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0088341.1	Cmc04g0088341.1	mRNA