Cmc04g0087841 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0087841
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	protein LOL1
Location	CMiso1.1chr04: 688527 .. 691639 (+)
RNA-Seq Expression	Cmc04g0087841
Synteny	Cmc04g0087841

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGATCCTGTTACTGGTGTTTGTTTCTTTTACAAGTCTTTTAGGTTACAAAGACGTTGATTTGTGTAGTGTTACGTTCGAGTTTGTATGTTTGTTGTGCTATGCTTGAGTGGAGTGAGTTACTTGGAGCTAAATTATTGGATTGAGATGAGATTTAACTTTCTAAATTTTAAGATTTTTTTGCCATTTTGTTATGTCATATTTAGATTGGGTCCTTCGCTTTATCCCCTCTTACTCTTGATCGACTATCTATCGATCTTTATTACAACACATCTAATATTCTCCCATCTCGATCTCCTCTTGCTATCTCGTCTCTACAACCCTCACCTTAACTCGATCTCCTCTTGCTTTCTCCACTTTTCTCGTTAGTTTTCCAGCGACCTCACACATCCAATGTTTCAACCCACTTTGACAACTTTAACTACACATTTGATGGCTCTAATCCTTTATGGTCGAGGACACCATTGCAATTGGAAAAAACTGAAACCACTACAACTAGGAAGAGAAAGATGATTTTAGTTAATAATGAGGTAAGCAATAGGACAAAATTCTCAGTTAAAGAAAAGGTGAGGCAAAATCCACTATGCAGTTTCTTTTGGTGGATTCTATACTATTTTCTCTAGTTTTTTCTAATATATCTCTCTCTATATATGTATGTATGTTTTGTGGTGATTTATTTGAAGTTTGAACTTGGGATTAAGAGAAGGCCTTTCAAAGGAAAGAAAGAAAACAAAGAAAAAGCTTAGTTGTAAGAAAGGTTTCAACAAACAACTATTTGATACTTATCCTTTTGCTTTTACGTTTCTTACTTTGTTTACTTTATCAAATCTAAAATTTTTACATCCCTTTCCTCTATCTCCCCTTCCTTTCTTCTATCTGCTCCTCCAACTTGCAAACGTATGAATTTCCCCTCACTTCAACTCATTGGCTTTTCAATCTTTCTTCCCCCAGCTTCTTCCTTGCTGGGTTTCTCCATTTTTTTGGTTTGTTCCATTCCATTTCTGCTCAATATCAATACACTACATTACATTACTTTACGTTACTCTTTTTTCAGGGTTCTTCCACTTTTCACACACCCTCATCAAAATTCCTTCATTTCCATCCAAATTTCTTCCCAACACATGTTGCAATTCTCTATCTTTATTTGTTTTCTTCTTTTGATTCCTCTATTTTCTGTGAATTTTCCCAACAGGTTCATCTCCCTAAACTTGTTTCCATGGAGGGAAGTAGCTGGTTTTGTCTGAGCTTTTGAGAGCTTGGTTTGAAGATAGAGATAAAGAGAGAAAAGTTAGGAAAGATTTTACTTTATCAAAGCTGCAAAATGCCACCAGTTCCTCTTGCTCCATATCCAACCCCTCCAGCTCCCTATACACAACCTTCTAATGGTATTCACTCTCTTTCAAAACTTTACTCATTTCTTAACTACATTCTTCTTGTTTGATTGCTAGAAAATGTATTAGTTTCCCATTTTCAAATTTTCTCATCAATGGAGCTGTAAATCCTATTGTTTGATGTTGCATATCTATAGCCTTGATTCTAAATTATGTTTTATGAGAGATTATTCAAGAACATTGGGGTTTCTTTTTATGTGTTTGGTTTCATTAGATCAGTGATTTGTTATTTGGTACTCAACTGAGGTTTGAAATGTGCATTTTGGTTGTTGGTCATTAGCCACACAAAGCCAACTTGTGTGCTCAGGATGCAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCTGTTTGTAATGCAGTCACTGCCGTACCGGCCCCCGGTATATTTTTTCTTCCTCTTCCTTTTCACCATCTAGCTCATGCCGATGCTAAATTTGAAATTTCTGTTAGAGAATTCTGTTGTTTTTGTTTATAAAGAAAGATTGGAAGCTTTAGTTACTTTTTGTGTAAAACAGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATCCGTGGTGCCACGAGCGTCCAATGTTCTTGTTGCCACACTGTCAACTTAGCTTTGGAAGGTAGGGAAATCTCAGTAACTTTCAGAAACTCGAATCAAAATTACGTTAGACATCTCGAACAAATCTTGGTAGATTGCGTAGGCTGTTTAGAATAATTCATTCCTATCTAACTCCCATCATGAATAGCAACATTATGTTACAGATTGAGTTCACTAAAGGCATATCGTTAGAAAATAGTTAAGAGCTACAAAACTTTGTTTTGTAAGGAAAAACTCATGTGAACCAAGCGATAAATCCATATTGTTTCAGCCAATCAGGTGGCGCACGTTAGCTGTGGGAACTGTAGGATGCTACTGATGTATCAATATGGAGCACGGTCAGTGAAATGTGCAGTATGCAATTTTGTAACATCAGTTGGGGTAAGTAAAAAAAAAAAAAAAACTTCCTTTCTGTTGAACTCTCTTTTTCCGTACGAACATTGTTGAACTCTCTTTTTCTATACGAATATGAACTCGGAATAAAGTCATGCGATCTAAATCATCAGATTATTTGAGAATGTCATCATCAGAAAGCTTAGAACATCAAACATGGCTATGATAATACTCTAAACTCTTAAATCTATGCTTTTAAAGTTTTAACTCTATCTTTCTATTGCCATTTCTTACTTGAATATGAAGAGAAGCCATACATTCTAGTATCTCACACTATCAATGTCTTTCATTGTAGATGTCAACAAGTGCAATCGATCAAAAAGCATAATAGCTAAAGTTATCGTAAACAAGGTTGTCCAAAATTCGACAACTGCGGCTTCGCCCATTATTCGTAATGCCCTCGAGGGTGTTTGTCTCGACTCGACAATCGGAGGTTCCTCTTCTTATTCACTTGTATAGAGCTGTATTTCTGCGCGTGAACTTTAAATGTTGCTATTTTTTTCATCTTCACAGTGGTTGAATGTATGCTTTAAGTAGTTTTGAGAAAATATATATGAATATGGTAGAGAGACAAGTTTTTATACTGTCTTGAGTGTAATATAACTGTTGGTAAAGATGGATTTTGGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTGCTTTTTCTTCTCCCTTTTTTACCCTCTCTTTGTGAATTGCACAAAAAGG

mRNA sequence

TTGATCCTGTTACTGGTGTTTGTTTCTTTTACAAGTCTTTTAGGTTACAAAGACGTTGATTTGTGTAGTGTTACGTTCGAGTTTGTATGTTTGTTGTGCTATGCTTGAGTGGAGTGAGTTACTTGGAGCTAAATTATTGGATTGAGATGAGATTTAACTTTCTAAATTTTAAGATTTTTTTGCCATTTTGTTATGTCATATTTAGATTGGGTCCTTCGCTTTATCCCCTCTTACTCTTGATCGACTATCTATCGATCTTTATTACAACACATCTAATATTCTCCCATCTCGATCTCCTCTTGCTATCTCGTCTCTACAACCCTCACCTTAACTCGATCTCCTCTTGCTTTCTCCACTTTTCTCGTTAGTTTTCCAGCGACCTCACACATCCAATGTTTCAACCCACTTTGACAACTTTAACTACACATTTGATGGCTCTAATCCTTTATGGTCGAGGACACCATTGCAATTGGAAAAAACTGAAACCACTACAACTAGGAAGAGAAAGATGATTTTAGTTAATAATGAGGTAAGCAATAGGACAAAATTCTCAGTTAAAGAAAAGTTTGAACTTGGGATTAAGAGAAGGCCTTTCAAAGGAAAGAAAGAAAACAAAGAAAAAGCTTAGTTGTTCATCTCCCTAAACTTGTTTCCATGGAGGGAAGTAGCTGGTTTTGTCTGAGCTTTTGAGAGCTTGGTTTGAAGATAGAGATAAAGAGAGAAAAGTTAGGAAAGATTTTACTTTATCAAAGCTGCAAAATGCCACCAGTTCCTCTTGCTCCATATCCAACCCCTCCAGCTCCCTATACACAACCTTCTAATGCCACACAAAGCCAACTTGTGTGCTCAGGATGCAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCTGTTTGTAATGCAGTCACTGCCGTACCGGCCCCCGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATCCGTGGTGCCACGAGCGTCCAATGTTCTTGTTGCCACACTGTCAACTTAGCTTTGGAAGCCAATCAGGTGGCGCACGTTAGCTGTGGGAACTGTAGGATGCTACTGATGTATCAATATGGAGCACGGTCAGTGAAATGTGCAGTATGCAATTTTGTAACATCAGTTGGGGTAAATGTCAACAAGTGCAATCGATCAAAAAGCATAATAGCTAAAGTTATCGTAAACAAGGTTGTCCAAAATTCGACAACTGCGGCTTCGCCCATTATTCGTAATGCCCTCGAGGGTGTTTGTCTCGACTCGACAATCGGAGGTTCCTCTTCTTATTCACTTGTATAGAGCTGTATTTCTGCGCGTGAACTTTAAATGTTGCTATTTTTTTCATCTTCACAGTGGTTGAATGTATGCTTTAAGTAGTTTTGAGAAAATATATATGAATATGGTAGAGAGACAAGTTTTTATACTGTCTTGAGTGTAATATAACTGTTGGTAAAGATGGATTTTGGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTGCTTTTTCTTCTCCCTTTTTTACCCTCTCTTTGTGAATTGCACAAAAAGG

Coding sequence (CDS)

ATGCCACCAGTTCCTCTTGCTCCATATCCAACCCCTCCAGCTCCCTATACACAACCTTCTAATGCCACACAAAGCCAACTTGTGTGCTCAGGATGCAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCTGTTTGTAATGCAGTCACTGCCGTACCGGCCCCCGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATCCGTGGTGCCACGAGCGTCCAATGTTCTTGTTGCCACACTGTCAACTTAGCTTTGGAAGCCAATCAGGTGGCGCACGTTAGCTGTGGGAACTGTAGGATGCTACTGATGTATCAATATGGAGCACGGTCAGTGAAATGTGCAGTATGCAATTTTGTAACATCAGTTGGGGTAAATGTCAACAAGTGCAATCGATCAAAAAGCATAATAGCTAAAGTTATCGTAAACAAGGTTGTCCAAAATTCGACAACTGCGGCTTCGCCCATTATTCGTAATGCCCTCGAGGGTGTTTGTCTCGACTCGACAATCGGAGGTTCCTCTTCTTATTCACTTGTATAG

Protein sequence

MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVNVNKCNRSKSIIAKVIVNKVVQNSTTAASPIIRNALEGVCLDSTIGGSSSYSLV

Homology

[Close]

BLAST of Cmc04g0087841 vs. NCBI nr
Match: XP_038887481.1 (protein LOL1 isoform X1 [Benincasa hispida] >XP_038887482.1 protein LOL1 isoform X1 [Benincasa hispida])

HSP 1 Score: 314.7 bits (805), Expect = 5.4e-82
Identity = 159/175 (90.86%), Postives = 166/175 (94.86%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60
           MPPVPLAPYPTPP PYTQP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVT VP PG
Sbjct: 1   MPPVPLAPYPTPPTPYTQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTTVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGVNVNKCNRSKSIIAKVIVNKVVQNSTTAASPIIRNALEGVC 176
           SVKCAVCNFVTSVGV+VN+ +RSKS+IAKVIVN VV NSTTAA   IR+AL+GVC
Sbjct: 121 SVKCAVCNFVTSVGVDVNEHDRSKSLIAKVIVNMVVPNSTTAALSNIRDALQGVC 175

[Close]

BLAST of Cmc04g0087841 vs. NCBI nr
Match: XP_008465951.1 (PREDICTED: protein LOL1 [Cucumis melo] >XP_008465952.1 PREDICTED: protein LOL1 [Cucumis melo] >XP_008465953.1 PREDICTED: protein LOL1 [Cucumis melo] >XP_008465954.1 PREDICTED: protein LOL1 [Cucumis melo] >XP_016903577.1 PREDICTED: protein LOL1 [Cucumis melo])

HSP 1 Score: 274.6 bits (701), Expect = 6.2e-70
Identity = 134/138 (97.10%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60
           MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGVNVN 139
           SVKCAVCNFVTSVG++ +
Sbjct: 121 SVKCAVCNFVTSVGMSTS 138

[Close]

BLAST of Cmc04g0087841 vs. NCBI nr
Match: XP_004148490.1 (protein LOL1 [Cucumis sativus] >XP_011652655.1 protein LOL1 [Cucumis sativus] >XP_011652656.1 protein LOL1 [Cucumis sativus] >XP_011652657.1 protein LOL1 [Cucumis sativus] >XP_031737667.1 protein LOL1 [Cucumis sativus] >XP_031737668.1 protein LOL1 [Cucumis sativus] >KGN60405.1 hypothetical protein Csa_001040 [Cucumis sativus])

HSP 1 Score: 272.7 bits (696), Expect = 2.4e-69
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60
           MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP PG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGVNVN 139
           SVKCAVCNFVTSVG++ +
Sbjct: 121 SVKCAVCNFVTSVGMSTS 138

[Close]

BLAST of Cmc04g0087841 vs. NCBI nr
Match: KAA0038592.1 (protein LOL1 [Cucumis melo var. makuwa] >TYK31149.1 protein LOL1 [Cucumis melo var. makuwa])

HSP 1 Score: 269.6 bits (688), Expect = 2.0e-68
Identity = 148/189 (78.31%), Postives = 149/189 (78.84%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60
           MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE                       
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE----------------------- 120

Query: 121 SVKCAVCNFVTSVGVNVNKCNRSKSIIAKVIVNKVVQNSTTAASPIIRNALEGVCLDSTI 180
                          +VNKCNRSKSIIAKVIVNKVVQNSTTAASPIIRNALEGVCLD T 
Sbjct: 121 ---------------DVNKCNRSKSIIAKVIVNKVVQNSTTAASPIIRNALEGVCLDLTN 151

Query: 181 GGSSSYSLV 190
           GGSSSYSLV
Sbjct: 181 GGSSSYSLV 151

[Close]

BLAST of Cmc04g0087841 vs. NCBI nr
Match: XP_022952054.1 (protein LOL1-like [Cucurbita moschata] >XP_022952055.1 protein LOL1-like [Cucurbita moschata] >XP_023553673.1 protein LOL1-like [Cucurbita pepo subsp. pepo] >KAG6571844.1 Protein LOL1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 269.2 bits (687), Expect = 2.6e-68
Identity = 130/138 (94.20%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60
           MPPVPLAPYPTPPAPY+QP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP PG
Sbjct: 1   MPPVPLAPYPTPPAPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGVNVN 139
           SVKCAVCNFVTS+G+  +
Sbjct: 121 SVKCAVCNFVTSIGMTTS 138

[Close]

BLAST of Cmc04g0087841 vs. ExPASy Swiss-Prot
Match: Q0J7V9 (Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.1e-64
Identity = 120/134 (89.55%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 3   PVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTE 62
           PVPLAPYPTPP P+T P N  QSQLVCSGCRNLL+YP GATSVCCAVC+ VTAVPAPGTE
Sbjct: 43  PVPLAPYPTPPVPFT-PPNGAQSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTE 102

Query: 63  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSV 122
           MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMYQYGARSV
Sbjct: 103 MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSV 162

Query: 123 KCAVCNFVTSVGVN 137
           KCAVCNFVTSVG +
Sbjct: 163 KCAVCNFVTSVGAS 175

[Close]

BLAST of Cmc04g0087841 vs. ExPASy Swiss-Prot
Match: Q93ZB1 (Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.6e-63
Identity = 123/141 (87.23%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 3   PVPLAPYPTPPAPYTQPSNAT---------QSQLVCSGCRNLLLYPVGATSVCCAVCNAV 62
           PVPLAPYPTPPAP   PS  T         QSQLVCSGCRNLL+YPVGATSVCCAVCNAV
Sbjct: 2   PVPLAPYPTPPAPALAPSYNTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAV 61

Query: 63  TAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLL 122
           TAVP PGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLL
Sbjct: 62  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 121

Query: 123 MYQYGARSVKCAVCNFVTSVG 135
           MYQYGARSVKCAVCNFVTSVG
Sbjct: 122 MYQYGARSVKCAVCNFVTSVG 142

[Close]

BLAST of Cmc04g0087841 vs. ExPASy Swiss-Prot
Match: Q2QMB3 (Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.9e-39
Identity = 73/114 (64.04%), Postives = 93/114 (81.58%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTA-VPAPGTEMAQLVCGGCHTLLMYIRGAT 83
           QSQ+VC GCRN+LLYP GA SVCCAVC+AV++  P+PG ++A L+CGGC TLLMY R AT
Sbjct: 2   QSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNAT 61

Query: 84  SVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVN 137
           SV+CSCC TVNL    + +AH++CG C+ +LMY YGA SVKCA+CNF+T+ G+N
Sbjct: 62  SVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGMN 115

[Close]

BLAST of Cmc04g0087841 vs. ExPASy Swiss-Prot
Match: Q6ASS2 (Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.9e-37
Identity = 73/115 (63.48%), Postives = 88/115 (76.52%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAV--PAPGTEMAQLVCGGCHTLLMYIRGA 83
           QSQ+VC GCR++L YP GA SVCCA+C A+T V  PAP  EMA L+CGGC TLLMY R A
Sbjct: 2   QSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRNA 61

Query: 84  TSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVN 137
            +V+CSCC TVNL    N +AHVSCG CR  LMY YGA SVKCA+C+++T+ G+N
Sbjct: 62  DTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTGMN 116

[Close]

BLAST of Cmc04g0087841 vs. ExPASy Swiss-Prot
Match: P94077 (Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.9e-33
Identity = 71/124 (57.26%), Postives = 89/124 (71.77%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGT--EMAQLVCGGCHTLLMYIRGA 83
           Q QLVC GCRNLL+YP GA++V CA+CN +  VP P    +MA ++CGGC T+LMY RGA
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66

Query: 84  TSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTS 137
           +SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 67  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 126

[Close]

BLAST of Cmc04g0087841 vs. ExPASy TrEMBL
Match: A0A1S3CQ35 (protein LOL1 OS=Cucumis melo OX=3656 GN=LOC103503523 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 3.0e-70
Identity = 134/138 (97.10%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60
           MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGVNVN 139
           SVKCAVCNFVTSVG++ +
Sbjct: 121 SVKCAVCNFVTSVGMSTS 138

[Close]

BLAST of Cmc04g0087841 vs. ExPASy TrEMBL
Match: A0A0A0LEE4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902960 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 1.1e-69
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60
           MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP PG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGVNVN 139
           SVKCAVCNFVTSVG++ +
Sbjct: 121 SVKCAVCNFVTSVGMSTS 138

[Close]

BLAST of Cmc04g0087841 vs. ExPASy TrEMBL
Match: A0A5A7T554 (Protein LOL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004290 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 9.7e-69
Identity = 148/189 (78.31%), Postives = 149/189 (78.84%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60
           MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE                       
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE----------------------- 120

Query: 121 SVKCAVCNFVTSVGVNVNKCNRSKSIIAKVIVNKVVQNSTTAASPIIRNALEGVCLDSTI 180
                          +VNKCNRSKSIIAKVIVNKVVQNSTTAASPIIRNALEGVCLD T 
Sbjct: 121 ---------------DVNKCNRSKSIIAKVIVNKVVQNSTTAASPIIRNALEGVCLDLTN 151

Query: 181 GGSSSYSLV 190
           GGSSSYSLV
Sbjct: 181 GGSSSYSLV 151

[Close]

BLAST of Cmc04g0087841 vs. ExPASy TrEMBL
Match: A0A6J1GKN9 (protein LOL1-like OS=Cucurbita moschata OX=3662 GN=LOC111454822 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.3e-68
Identity = 130/138 (94.20%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60
           MPPVPLAPYPTPPAPY+QP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP PG
Sbjct: 1   MPPVPLAPYPTPPAPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGVNVN 139
           SVKCAVCNFVTS+G+  +
Sbjct: 121 SVKCAVCNFVTSIGMTTS 138

[Close]

BLAST of Cmc04g0087841 vs. ExPASy TrEMBL
Match: A0A5C7HBP8 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_019577 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.8e-67
Identity = 133/155 (85.81%), Postives = 141/155 (90.97%), Query Frame = 0


Query: 3   PVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTE 62
           PVPLAPYPTPPAPYT P+N  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP PGTE
Sbjct: 2   PVPLAPYPTPPAPYTPPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE 61

Query: 63  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSV 122
           MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNCRMLLMYQYGARSV
Sbjct: 62  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSV 121

Query: 123 KCAVCNFVTSVGVNVNKCNRSKSIIAKVIVNKVVQ 158
           KCAVCNFVTSVGV++NK  R++    K+   +V Q
Sbjct: 122 KCAVCNFVTSVGVSLNKRYRTEVQWLKLAERQVDQ 156

[Close]

BLAST of Cmc04g0087841 vs. TAIR 10
Match: AT1G32540.2 (lsd one like 1 )

HSP 1 Score: 243.0 bits (619), Expect = 1.9e-64
Identity = 123/141 (87.23%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 3   PVPLAPYPTPPAPYTQPSNAT---------QSQLVCSGCRNLLLYPVGATSVCCAVCNAV 62
           PVPLAPYPTPPAP   PS  T         QSQLVCSGCRNLL+YPVGATSVCCAVCNAV
Sbjct: 2   PVPLAPYPTPPAPALAPSYNTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAV 61

Query: 63  TAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLL 122
           TAVP PGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLL
Sbjct: 62  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 121

Query: 123 MYQYGARSVKCAVCNFVTSVG 135
           MYQYGARSVKCAVCNFVTSVG
Sbjct: 122 MYQYGARSVKCAVCNFVTSVG 142

[Close]

BLAST of Cmc04g0087841 vs. TAIR 10
Match: AT1G32540.3 (lsd one like 1 )

HSP 1 Score: 243.0 bits (619), Expect = 1.9e-64
Identity = 123/141 (87.23%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 3   PVPLAPYPTPPAPYTQPSNAT---------QSQLVCSGCRNLLLYPVGATSVCCAVCNAV 62
           PVPLAPYPTPPAP   PS  T         QSQLVCSGCRNLL+YPVGATSVCCAVCNAV
Sbjct: 2   PVPLAPYPTPPAPALAPSYNTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAV 61

Query: 63  TAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLL 122
           TAVP PGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLL
Sbjct: 62  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 121

Query: 123 MYQYGARSVKCAVCNFVTSVG 135
           MYQYGARSVKCAVCNFVTSVG
Sbjct: 122 MYQYGARSVKCAVCNFVTSVG 142

[Close]

BLAST of Cmc04g0087841 vs. TAIR 10
Match: AT1G32540.1 (lsd one like 1 )

HSP 1 Score: 224.9 bits (572), Expect = 5.3e-59
Identity = 108/115 (93.91%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 20  SNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGTEMAQLVCGGCHTLLMYIR 79
           S + QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVP PGTEMAQLVCGGCHTLLMYIR
Sbjct: 61  STSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 120

Query: 80  GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVG 135
           GATSVQCSCCHTVNLALEANQVAHV+CGNC MLLMYQYGARSVKCAVCNFVTSVG
Sbjct: 121 GATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVG 175

[Close]

BLAST of Cmc04g0087841 vs. TAIR 10
Match: AT4G20380.2 (LSD1 zinc finger family protein )

HSP 1 Score: 142.5 bits (358), Expect = 3.4e-34
Identity = 71/124 (57.26%), Postives = 89/124 (71.77%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGT--EMAQLVCGGCHTLLMYIRGA 83
           Q QLVC GCRNLL+YP GA++V CA+CN +  VP P    +MA ++CGGC T+LMY RGA
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66

Query: 84  TSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTS 137
           +SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 67  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 126

[Close]

BLAST of Cmc04g0087841 vs. TAIR 10
Match: AT4G20380.1 (LSD1 zinc finger family protein )

HSP 1 Score: 142.5 bits (358), Expect = 3.4e-34
Identity = 71/124 (57.26%), Postives = 89/124 (71.77%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPGT--EMAQLVCGGCHTLLMYIRGA 83
           Q QLVC GCRNLL+YP GA++V CA+CN +  VP P    +MA ++CGGC T+LMY RGA
Sbjct: 2   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 61

Query: 84  TSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTS 137
           +SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 62  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 121

The following BLAST results are available for this feature:

BLAST of Cmc04g0087841 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887481.1	5.4e-82	90.86	protein LOL1 isoform X1 [Benincasa hispida] >XP_038887482.1 protein LOL1 isoform...	[more]
XP_008465951.1	6.2e-70	97.10	PREDICTED: protein LOL1 [Cucumis melo] >XP_008465952.1 PREDICTED: protein LOL1 [...	[more]
XP_004148490.1	2.4e-69	96.38	protein LOL1 [Cucumis sativus] >XP_011652655.1 protein LOL1 [Cucumis sativus] >X...	[more]
KAA0038592.1	2.0e-68	78.31	protein LOL1 [Cucumis melo var. makuwa] >TYK31149.1 protein LOL1 [Cucumis melo v...	[more]
XP_022952054.1	2.6e-68	94.20	protein LOL1-like [Cucurbita moschata] >XP_022952055.1 protein LOL1-like [Cucurb...	[more]

BLAST of Cmc04g0087841 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0J7V9	1.1e-64	89.55	Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1	[more]
Q93ZB1	2.6e-63	87.23	Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1	[more]
Q2QMB3	5.9e-39	64.04	Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1	[more]
Q6ASS2	1.9e-37	63.48	Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1	[more]
P94077	4.9e-33	57.26	Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1	[more]

BLAST of Cmc04g0087841 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CQ35	3.0e-70	97.10	protein LOL1 OS=Cucumis melo OX=3656 GN=LOC103503523 PE=4 SV=1	[more]
A0A0A0LEE4	1.1e-69	96.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902960 PE=4 SV=1	[more]
A0A5A7T554	9.7e-69	78.31	Protein LOL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004290 ...	[more]
A0A6J1GKN9	1.3e-68	94.20	protein LOL1-like OS=Cucurbita moschata OX=3662 GN=LOC111454822 PE=4 SV=1	[more]
A0A5C7HBP8	1.8e-67	85.81	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_019577 PE=4 SV=1	[more]

BLAST of Cmc04g0087841 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32540.2	1.9e-64	87.23	lsd one like 1	[more]
AT1G32540.3	1.9e-64	87.23	lsd one like 1	[more]
AT1G32540.1	5.3e-59	93.91	lsd one like 1	[more]
AT4G20380.2	3.4e-34	57.26	LSD1 zinc finger family protein	[more]
AT4G20380.1	3.4e-34	57.26	LSD1 zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 29..53 e-value: 1.3E-10 score: 40.9 coord: 68..92 e-value: 2.2E-12 score: 46.5 coord: 106..130 e-value: 1.3E-12 score: 47.3
IPR005735	Zinc finger, LSD1-type	TIGRFAM	TIGR01053	TIGR01053	coord: 103..133 e-value: 2.8E-11 score: 40.8 coord: 65..94 e-value: 1.3E-14 score: 51.5 coord: 26..56 e-value: 1.5E-12 score: 44.9
IPR040319	LSD1-like	PANTHER	PTHR31747	PROTEIN LSD1	coord: 3..139
None	No IPR available	PANTHER	PTHR31747:SF1	PROTEIN LOL1	coord: 3..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0087841.1	Cmc04g0087841.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus