Cmc03g0079791 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0079791
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ran BP2/NZF zinc finger-like superfamily protein
Location	CMiso1.1chr03: 25851149 .. 25853163 (-)
RNA-Seq Expression	Cmc03g0079791
Synteny	Cmc03g0079791

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGTAAGCGAAAGGCAAAGCCAAAAACCTCGTTTTATTCTTCTCGATTTTCGAAATAAGAAAAAGAAAAAAGAAAAAAGAAAAAAAGAAAAATCCAAGTTCTTCACCGGTATAAAAACCACCACCACCGGCTAATTCACCAGAGAAACGTGATCAAGCCATTACAAACCAAACCGCCATCACCTTCAACTTCACGCACAAGGTAACCCTTTCCGTTACTCATAGTTTTTTCTTCTTTTTAATCAAACCCTAAATTTCCCAGAACTAACACTAAATTTCCAGGAAAAAAGAAAAAAAATATCAACAAAAGGATGAGTCGGCCGGGGGATTGGAATTGCAGGTCTTGCAACCATCTCAACTTTCAAAGGAGAGATTCTTGTCAACGATGTGGAGACCCTAGGGCCGACTTCGGCGGCGGAAGCTACGGCGGTGGACGAGTTGGTGGTTCTTCATCCTTCGGTTTCACTACCGGCCCCGACGTCCGCCCTGGGGATTGGTACTGCACCGTCGCTAACTGCGGCGCTCATAACTTCTCTAGCCGCTCTATCTGTTTTAAGTGCGGCGCCACCAAGGATGAGACTTCCGCCGCCGCTTACGACGGCGATTTGCCCAGAATGAGAGGCTTTAACTTCGGCGGTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTGCCAGGTAGGGTTCTTCACTTTTCCTTTAAATTCCATTTCCATCCCCTCCACTTTCTTTAATTTTCTATTTTAGTCCTCAACTTTTCAAAATTTTCTAATATTCTCAATTTTATGTTATTTTACTGATTTTATTTATTACGGTTCTTTACCGGTAAAATTTTGAAATTGATAAAATTTGAGGTTTATTTCATTATTTTGTTGACGCTAATTAATTAACTGTGAGCTTCAAGTACATATTCAATTATCATCCCATTAAAATTTTAACTATTATTATTATTTTGTCGTCTATCGCGATTACTAATTAGCTTTGATCAACTTCAATAGTTTAAAATATTTATCTACAATTTTAACTATTGTCGTTATTCTGTCGATATCATCATAACTTTAATGAACTTGGTGTCGTTTTTCTACTGATATCTTTGTAGCTTTAACGAACTTAGATACGATATTAATACATACATTTAAAGTTACATTATTTTCTTTTTATATAAAAGATGACATTATTTATTGAATTAAAGGGTTTGGAGTAAGTTGTTTATTTTCTTTAGAATTTAGACATTAAAATAAATATTTTGATGGTCTAAAAGATGGATTGATTTTGCTTTTATTCAAGAGAGGGTTAAAATATATATGAGGAAGATTTTTTCGACTACTCGTTTTAAATTTTGATGTATATGGAACGACAGATCGGATTGCAATGAGCACAACTTTGCGAGTCGAAGGGAATGCTTTAGATGCAATGCGCCAAGGGATTCCAACAGCAAGTCACCATACTCTTAAAGGTAATTAATTAATTAATTTCCTTCAACAACATAAACAAATTACCATATTTATAAAATTGACCCGTTATATATATTAATAAAACTCATATTATTATTATTATTATAAATAAGTGGCATTTAATTATTTGTCATTCTAATATTATTATTTTGGGAATATTTTATTTTACAGGTGGTGCCAATGGGAAGGAATAAATTCTAGCTAGAAAGAAGAGGAGAGTTTCCCATGATACCTGGAACGTCGTCGTTTTGATTTTTCCTTTTTTTGTACCCTCTCTATTTTTCAGTTTCAAAAGTGATTTAAGTGTCTCCTTTTTGACGGGGGAGCTTTAAATTTAGAAGAAGTATGAGATTTCTGCATGCATGCAGAAAAAAAAAAAAAAAAACTTTGGCAGTACCATTTTAATTAATTAATGAGGCCCCCTATCTTTGTATCCAATTTTCAAATTTATATTAGTAACCTATTTCAAAAAGGAAAAAAAAATTATATTAGTACCCATCTTTTATATTTTAATTAATTGGTAAACTTTCGCTTGATGTTATGTTCTTGTCTCT

mRNA sequence

TTGGTAAGCGAAAGGCAAAGCCAAAAACCTCGTTTTATTCTTCTCGATTTTCGAAATAAGAAAAAGAAAAAAGAAAAAAGAAAAAAAGAAAAATCCAAGTTCTTCACCGGTATAAAAACCACCACCACCGGCTAATTCACCAGAGAAACGTGATCAAGCCATTACAAACCAAACCGCCATCACCTTCAACTTCACGCACAAGGAAAAAAGAAAAAAAATATCAACAAAAGGATGAGTCGGCCGGGGGATTGGAATTGCAGGTCTTGCAACCATCTCAACTTTCAAAGGAGAGATTCTTGTCAACGATGTGGAGACCCTAGGGCCGACTTCGGCGGCGGAAGCTACGGCGGTGGACGAGTTGGTGGTTCTTCATCCTTCGGTTTCACTACCGGCCCCGACGTCCGCCCTGGGGATTGGTACTGCACCGTCGCTAACTGCGGCGCTCATAACTTCTCTAGCCGCTCTATCTGTTTTAAGTGCGGCGCCACCAAGGATGAGACTTCCGCCGCCGCTTACGACGGCGATTTGCCCAGAATGAGAGGCTTTAACTTCGGCGGTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTGCCAGATCGGATTGCAATGAGCACAACTTTGCGAGTCGAAGGGAATGCTTTAGATGCAATGCGCCAAGGGATTCCAACAGCAAGTCACCATACTCTTAAAGGTGGTGCCAATGGGAAGGAATAAATTCTAGCTAGAAAGAAGAGGAGAGTTTCCCATGATACCTGGAACGTCGTCGTTTTGATTTTTCCTTTTTTTGTACCCTCTCTATTTTTCAGTTTCAAAAGTGATTTAAGTGTCTCCTTTTTGACGGGGGAGCTTTAAATTTAGAAGAAGTATGAGATTTCTGCATGCATGCAGAAAAAAAAAAAAAAAAACTTTGGCAGTACCATTTTAATTAATTAATGAGGCCCCCTATCTTTGTATCCAATTTTCAAATTTATATTAGTAACCTATTTCAAAAAGGAAAAAAAAATTATATTAGTACCCATCTTTTATATTTTAATTAATTGGTAAACTTTCGCTTGATGTTATGTTCTTGTCTCT

Coding sequence (CDS)

ATGAGTCGGCCGGGGGATTGGAATTGCAGGTCTTGCAACCATCTCAACTTTCAAAGGAGAGATTCTTGTCAACGATGTGGAGACCCTAGGGCCGACTTCGGCGGCGGAAGCTACGGCGGTGGACGAGTTGGTGGTTCTTCATCCTTCGGTTTCACTACCGGCCCCGACGTCCGCCCTGGGGATTGGTACTGCACCGTCGCTAACTGCGGCGCTCATAACTTCTCTAGCCGCTCTATCTGTTTTAAGTGCGGCGCCACCAAGGATGAGACTTCCGCCGCCGCTTACGACGGCGATTTGCCCAGAATGAGAGGCTTTAACTTCGGCGGTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTGCCAGATCGGATTGCAATGAGCACAACTTTGCGAGTCGAAGGGAATGCTTTAGATGCAATGCGCCAAGGGATTCCAACAGCAAGTCACCATACTCTTAA

Protein sequence

MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPGDWYCTVANCGAHNFSSRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS

Homology

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BLAST of Cmc03g0079791 vs. NCBI nr
Match: XP_004138734.1 (uncharacterized RNA-binding protein C17H9.04c [Cucumis sativus] >XP_008445181.1 PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis melo] >KAE8652195.1 hypothetical protein Csa_022624 [Cucumis sativus])

HSP 1 Score: 339.7 bits (870), Expect = 1.3e-89
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFSSRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120
           DWYCTVANCGAHNF+SRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 155

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BLAST of Cmc03g0079791 vs. NCBI nr
Match: XP_038884423.1 (uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida] >XP_038884424.1 uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida])

HSP 1 Score: 321.6 bits (823), Expect = 3.7e-84
Identity = 147/155 (94.84%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSCQRCG+PRADF GGSYG GRV GSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFVGGSYGSGRVLGSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFSSRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120
           DWYCTVANCGAHNF+SRSICFKCGA+KDETSAAAYDGDL RMRGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCTVANCGAHNFASRSICFKCGASKDETSAAAYDGDLTRMRGFNFGGASNRPGWKSGD 120

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WIC RSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 WICNRSDCNEHNFASRRECFRCNAPRDSNSKSPYS 155

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BLAST of Cmc03g0079791 vs. NCBI nr
Match: XP_023002539.1 (uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita maxima])

HSP 1 Score: 319.7 bits (818), Expect = 1.4e-83
Identity = 146/155 (94.19%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSC RCGDPRADFGGG YGGGR GGSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGGGYGGGR-GGSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFSSRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120
           DWYC VANCGAHNF+SRSICFKCGA+KDE SAAAYDGDL R+RGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGD 120

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154

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BLAST of Cmc03g0079791 vs. NCBI nr
Match: XP_023538151.1 (uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 317.8 bits (813), Expect = 5.3e-83
Identity = 145/155 (93.55%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSC RCGDPRADFGG +YGGGR GGSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAAYGGGR-GGSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFSSRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120
           DWYC VANCGAHNF+SRSICFKCGA+KDE SAAAYDGDL R+RGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGD 120

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154

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BLAST of Cmc03g0079791 vs. NCBI nr
Match: KAG6585459.1 (Peptidyl-prolyl cis-trans isomerase CYP95, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 317.4 bits (812), Expect = 6.9e-83
Identity = 145/155 (93.55%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1    MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60
            MSRPGDWNCRSCNHLNFQRRDSC RCGDPRADFGG  YGGGR GGSSSFGFTTGPDVRPG
Sbjct: 971  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGR-GGSSSFGFTTGPDVRPG 1030

Query: 61   DWYCTVANCGAHNFSSRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120
            DWYC VANCGAHNF+SRSICFKCGA+KDE SAAAYDGDL R+RGFNFGGASNRPGWKSGD
Sbjct: 1031 DWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGD 1090

Query: 121  WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
            WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 1091 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 1124

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BLAST of Cmc03g0079791 vs. ExPASy Swiss-Prot
Match: O13801 (Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17H9.04c PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-09
Identity = 53/154 (34.42%), Postives = 63/154 (40.91%), Query Frame = 0


Query: 3   RPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPGDW 62
           RPGDWNC  C   NFQRR SC RC      F G ++     G +     T  PD   G+ 
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRC-----SFPGPTHVSAATGSN-----TFSPDFPYGNS 402

Query: 63  YCTVANCGAHNFSSRSICFKCGATKDETSAAAYDGDLPRMRGFN----------FGGASN 122
           Y         N SS  I    G +   ++      DL    G N          FGG  N
Sbjct: 403 Y--------GNGSSHFIA-NYGGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRSFGG--N 462

Query: 123 RPGWKSGDWICARSDCNEHNFASRRECFRCNAPR 147
            P +++GDW C    C  HNFA    C RC A R
Sbjct: 463 VP-FRAGDWKCGSEGCGYHNFAKNVCCLRCGASR 474

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BLAST of Cmc03g0079791 vs. ExPASy Swiss-Prot
Match: Q27294 (RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 1.6e-05
Identity = 26/57 (45.61%), Postives = 30/57 (52.63%), Query Frame = 0


Query: 3   RPGDWNCRSCNHLNFQRRDSCQRCGDPRAD---FGGGSYGGGRVGGSSSFGFTTGPD 57
           R GDW C SCN+ NF  R+ C RC  P+ D     GG  GGG  GG    G+  G D
Sbjct: 275 RDGDWKCNSCNNTNFAWRNECNRCKTPKGDDEGSSGGGGGGGYGGGGGGGGYDRGND 331

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BLAST of Cmc03g0079791 vs. ExPASy Swiss-Prot
Match: P56959 (RNA-binding protein FUS OS=Mus musculus OX=10090 GN=Fus PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.7e-04
Identity = 34/99 (34.34%), Postives = 41/99 (41.41%), Query Frame = 0


Query: 30  RADFGGGSYGGGRVGGSSSFGFTTGPDVRPGDWYCTVANCGAHNFSSRSICFKCGATKDE 89
           R  +GGG  GGG  GG  S G   G   R GDW C    C   NFS R+ C +C A K +
Sbjct: 387 RGGYGGGGSGGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPD 446

Query: 90  TSAAA---------YDGDLPRMRGFNFGGASNRPGWKSG 120
                         Y  D     G++ GG   R G + G
Sbjct: 447 GPGGGPGGSHMGGNYGDDRRGRGGYDRGGYRGRGGDRGG 485

[Close]

BLAST of Cmc03g0079791 vs. ExPASy Swiss-Prot
Match: Q28009 (RNA-binding protein FUS OS=Bos taurus OX=9913 GN=FUS PE=2 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 8.6e-04
Identity = 33/90 (36.67%), Postives = 40/90 (44.44%), Query Frame = 0


Query: 30  RADFGGGSYGGGRVGGSSSFGFTTGPDVRPGDWYCTVANCGAHNFSSRSICFKCGATKDE 89
           R  +GGG  GGG  GG  S G   G   R GDW C    C   NFS R+ C +C A K +
Sbjct: 381 RGGYGGGGSGGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPD 440

Query: 90  TSAAAYDGDLPRMRGFNFGGASNRPGWKSG 120
                  G      G N+G   +R G + G
Sbjct: 441 GPGGGPGGS---HMGGNYG--DDRRGGRGG 465

[Close]

BLAST of Cmc03g0079791 vs. ExPASy Swiss-Prot
Match: P35637 (RNA-binding protein FUS OS=Homo sapiens OX=9606 GN=FUS PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 8.6e-04
Identity = 33/90 (36.67%), Postives = 40/90 (44.44%), Query Frame = 0


Query: 30  RADFGGGSYGGGRVGGSSSFGFTTGPDVRPGDWYCTVANCGAHNFSSRSICFKCGATKDE 89
           R  +GGG  GGG  GG  S G   G   R GDW C    C   NFS R+ C +C A K +
Sbjct: 394 RGGYGGGGSGGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPD 453

Query: 90  TSAAAYDGDLPRMRGFNFGGASNRPGWKSG 120
                  G      G N+G   +R G + G
Sbjct: 454 GPGGGPGGS---HMGGNYG--DDRRGGRGG 478

[Close]

BLAST of Cmc03g0079791 vs. ExPASy TrEMBL
Match: A0A0A0LLW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G380050 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 6.3e-90
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG
Sbjct: 81  MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 140

Query: 61  DWYCTVANCGAHNFSSRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120
           DWYCTVANCGAHNF+SRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD
Sbjct: 141 DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 200

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 201 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 235

[Close]

BLAST of Cmc03g0079791 vs. ExPASy TrEMBL
Match: A0A1S3BBL4 (uncharacterized RNA-binding protein C17H9.04c OS=Cucumis melo OX=3656 GN=LOC103488288 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 6.3e-90
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFSSRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120
           DWYCTVANCGAHNF+SRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 155

[Close]

BLAST of Cmc03g0079791 vs. ExPASy TrEMBL
Match: A0A6J1KQR0 (uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita maxima OX=3661 GN=LOC111496351 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 6.7e-84
Identity = 146/155 (94.19%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSC RCGDPRADFGGG YGGGR GGSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGGGYGGGR-GGSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFSSRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120
           DWYC VANCGAHNF+SRSICFKCGA+KDE SAAAYDGDL R+RGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGD 120

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154

[Close]

BLAST of Cmc03g0079791 vs. ExPASy TrEMBL
Match: A0A6J1GJE4 (TATA-binding protein-associated factor 2N-like OS=Cucurbita moschata OX=3662 GN=LOC111454402 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 2.8e-82
Identity = 144/155 (92.90%), Postives = 147/155 (94.84%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSC RCGDPRADFGG  YGGGR GGSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGR-GGSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFSSRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120
           DWYC VANCGAHNF+SRSICFKCGA+KDE SAAAYDGDL R+RGFNFGGASN PGWKSGD
Sbjct: 61  DWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNCPGWKSGD 120

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Sbjct: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 154

[Close]

BLAST of Cmc03g0079791 vs. ExPASy TrEMBL
Match: A0A6J1BUS6 (uncharacterized RNA-binding protein C17H9.04c-like OS=Momordica charantia OX=3673 GN=LOC111004930 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.2e-80
Identity = 137/155 (88.39%), Postives = 142/155 (91.61%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60
           MSRPGDWNCRSCNHLNFQRRDSC RCG+PRADFGGG YGG    GSSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPG 60

Query: 61  DWYCTVANCGAHNFSSRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGD 120
           DWYC + NCGAHNF+SRSICFKCGA KD+ SA AYDGD+PRMRGFNFGGASNRPGWKSGD
Sbjct: 61  DWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDIPRMRGFNFGGASNRPGWKSGD 120

Query: 121 WICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS 156
           WICARSDCNEHNFASRRECFRCNAPRDSN  SPYS
Sbjct: 121 WICARSDCNEHNFASRRECFRCNAPRDSNGNSPYS 155

[Close]

BLAST of Cmc03g0079791 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 214.2 bits (544), Expect = 7.6e-56
Identity = 107/167 (64.07%), Postives = 118/167 (70.66%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGG-GSYGGGRVGG--SSSFGFTTGPDV 60
           MSRPGDWNCRSC+HLNFQRRDSCQRCGD R+  GG G    G  GG   S+FGFTTG DV
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRAMSAFGFTTGSDV 60

Query: 61  RPGDWYCTVANCGAHNFSSRSICFKCGATKDETSA----------AAYDGDLPRMRGFNF 120
           RPGDWYCTV NCG HNF+SRS CFKCG  KDET A          A +D D+ R R    
Sbjct: 61  RPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSRVPGN 120

Query: 121 GGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPY 155
           GG   R  WKSGDWIC R  CNEHNFASR ECFRCNAPRD ++++ +
Sbjct: 121 GG---RSSWKSGDWICTRIGCNEHNFASRMECFRCNAPRDFSNRTSF 164

[Close]

BLAST of Cmc03g0079791 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 205.7 bits (522), Expect = 2.7e-53
Identity = 106/174 (60.92%), Postives = 122/174 (70.11%), Query Frame = 0


Query: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGG------GSYGGGRVGGSSSFGFTTG 60
           M+RPGDWNCR C+HLNFQRRDSCQRC +PR   GG        +GG  V  SSSFGF TG
Sbjct: 1   MNRPGDWNCRLCSHLNFQRRDSCQRCREPRP--GGISTDLLSGFGGRPV--SSSFGFNTG 60

Query: 61  PDVRPGDWYCTVANCGAHNFSSRSICFKCGATKDE---TSAAAYDGDL-----PRMRGFN 120
           PDVRPGDWYC + +CG HNF++RS CFKCGA KDE   +SAAA  G +     PR   F 
Sbjct: 61  PDVRPGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFG 120

Query: 121 FGGASN------RPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPY 155
           FGG+S+      R  WKSGDWIC RS CNEHNFASR ECFRCNAP++  ++ PY
Sbjct: 121 FGGSSSGGGGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKELATEPPY 170

[Close]

BLAST of Cmc03g0079791 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 131.0 bits (328), Expect = 8.5e-31
Identity = 62/143 (43.36%), Postives = 84/143 (58.74%), Query Frame = 0


Query: 5   GDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPGDWYC 64
           GDW C +C H NF++R+SCQ+CG P+       +GG  V    S       +V  GDWYC
Sbjct: 6   GDWLCGACQHANFKKRESCQKCGYPK-------FGGVDV----STYLYNRTEVMAGDWYC 65

Query: 65  TVANCGAHNFSSRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGDWICA 124
              NCG+HN++SR+ C++CG  K E +   Y     +M  +   GA+  PGWK+GDW+C 
Sbjct: 66  GALNCGSHNYASRTSCYRCGMIKVEYTEQYYGA---QMVAYGNDGAACPPGWKTGDWVCP 125

Query: 125 RSDCNEHNFASRRECFRCNAPRD 148
           R  C  HN+ASR ECF+C   RD
Sbjct: 126 RVGCGVHNYASRAECFKCKTTRD 134

[Close]

BLAST of Cmc03g0079791 vs. TAIR 10
Match: AT2G17975.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 58.5 bits (140), Expect = 5.4e-09
Identity = 42/135 (31.11%), Postives = 54/135 (40.00%), Query Frame = 0


Query: 58  RPGDWYCTVANCGAHNFSSRSICFKC--------GATKDETSAAAYDGDLPRMR------ 117
           R GDW C    CG HN+SSR  C KC        G  +  + A A++ D  R+       
Sbjct: 127 RSGDWIC---RCGFHNYSSRIQCKKCNEIAPLALGTKRLASEALAHEWDSKRLNQGYTSM 186

Query: 118 -----------GFNFGGASN------------RPG--------WKSGDWICARSDCNEHN 148
                      G + G  SN             P         W+ GDW+C  ++C  HN
Sbjct: 187 QTQSAIYASFPGMSLGRVSNWQLPLPFLQQHSTPALLGMGVKQWRDGDWMC--TNCKNHN 246

[Close]

BLAST of Cmc03g0079791 vs. TAIR 10
Match: AT1G70650.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 49.7 bits (117), Expect = 2.5e-06
Identity = 27/94 (28.72%), Postives = 37/94 (39.36%), Query Frame = 0


Query: 3   RPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPGDW 62
           + GDW C++CN LNF +   C RC D                        T   + PG+W
Sbjct: 279 KKGDWICQTCNFLNFSKNTRCLRCKDK----------------------PTLRQINPGEW 338

Query: 63  YCTVANCGAHNFSSRSICFKCGATKDETSAAAYD 97
            C   +C   NF   SIC KC   + + +    D
Sbjct: 339 EC--ESCNYINFRRNSICLKCDHKRQKAANVTPD 348

The following BLAST results are available for this feature:

BLAST of Cmc03g0079791 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138734.1	1.3e-89	99.35	uncharacterized RNA-binding protein C17H9.04c [Cucumis sativus] >XP_008445181.1 ...	[more]
XP_038884423.1	3.7e-84	94.84	uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida] >XP_03888...	[more]
XP_023002539.1	1.4e-83	94.19	uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita maxima]	[more]
XP_023538151.1	5.3e-83	93.55	uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita pepo subsp. pepo]	[more]
KAG6585459.1	6.9e-83	93.55	Peptidyl-prolyl cis-trans isomerase CYP95, partial [Cucurbita argyrosperma subsp...	[more]

BLAST of Cmc03g0079791 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O13801	1.4e-09	34.42	Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (stra...	[more]
Q27294	1.6e-05	45.61	RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2	[more]
P56959	1.7e-04	34.34	RNA-binding protein FUS OS=Mus musculus OX=10090 GN=Fus PE=1 SV=1	[more]
Q28009	8.6e-04	36.67	RNA-binding protein FUS OS=Bos taurus OX=9913 GN=FUS PE=2 SV=2	[more]
P35637	8.6e-04	36.67	RNA-binding protein FUS OS=Homo sapiens OX=9606 GN=FUS PE=1 SV=1	[more]

BLAST of Cmc03g0079791 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLW7	6.3e-90	99.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G380050 PE=4 SV=1	[more]
A0A1S3BBL4	6.3e-90	99.35	uncharacterized RNA-binding protein C17H9.04c OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1KQR0	6.7e-84	94.19	uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1GJE4	2.8e-82	92.90	TATA-binding protein-associated factor 2N-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1BUS6	1.2e-80	88.39	uncharacterized RNA-binding protein C17H9.04c-like OS=Momordica charantia OX=367...	[more]

BLAST of Cmc03g0079791 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15680.1	7.6e-56	64.07	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT5G25490.1	2.7e-53	60.92	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G26695.1	8.5e-31	43.36	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G17975.1	5.4e-09	31.11	zinc finger (Ran-binding) family protein	[more]
AT1G70650.1	2.5e-06	28.72	Ran BP2/NZF zinc finger-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 5..29 e-value: 7.3E-6 score: 35.5 coord: 119..145 e-value: 1.6E-5 score: 34.3 coord: 60..86 e-value: 3.0E-6 score: 36.8
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 3..29 e-value: 6.6E-4 score: 18.9 coord: 58..87 e-value: 7.9E-6 score: 25.1 coord: 117..146 e-value: 6.8E-9 score: 34.9
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 62..83
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 121..142
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 7..26
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 3..32 score: 9.969523
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 58..89 score: 9.80014
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 117..148 score: 10.579303
None	No IPR available	GENE3D	4.10.1060.10		coord: 2..32 e-value: 2.3E-10 score: 41.6 coord: 53..90 e-value: 8.7E-13 score: 49.3 coord: 110..149 e-value: 1.4E-11 score: 45.5
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 1..153
None	No IPR available	PANTHER	PTHR23111:SF26	RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN	coord: 1..153
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 2..31
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 111..149
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 54..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0079791.1	Cmc03g0079791.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding