Cmc03g0079501 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0079501
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	DEAD-box ATP-dependent RNA helicase 56-like
Location	CMiso1.1chr03: 25728401 .. 25729943 (+)
RNA-Seq Expression	Cmc03g0079501
Synteny	Cmc03g0079501

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAGGGTATTTTGGGCAAATCGTAAAAGTATTCCGCCTTTATAATGGGGCTTCATTTGTTGGAACCCTAATAATCCCCTTCGGCTCTTCCGCTCTCACACTCTACGATCTTTGGAAAAGCCAGGTCTTAACAATTTCTCTCCAGCTAACTTAGTTTTCCTTTGCAGACTTTGTGTAATCGCAACCCCAACTCTCAACTTCAGTTCTTAGCAGGCTAGCAGGTAATCTAAATCACTATGTTGGAAGCTATAGTTTCTCTCGTCTTACAACTTCTAAACCCTAGTTTTGAAATTGGGTTGGATTTACTTTCTGTGAACCCGAATTTTAATTTGTTCTTTGGGTTTCTTTGTAGGAAGAAATGGGAGAAACAAGAGACAACGAATATGAGGAAGAGCTCCTCGACTACGAGGAAGAAGAAGAGAAGGCCCCCGATTCCGTTGGAGCTAAAGTCAACGGTGAAGCTGGAAAGAAGTGAGTGGTCTTCTTATGCACCATCTTTAGCTTTTTTCTTTTCAGATTTGCTTATGGATGAACTATCGATTCAATATTTCACCACGGTTTCTTGAACTCATGTCATGCGAGAATTTGAGATTTGGTAGTAATCGTATCCATCCGGTTTAGTTTGGATCTAAGGCAGTTGGATTAAGTAGTTGTTTGAGCTTGGAGTGAACTTAAATTCGATTTTTTATTCTCCATAATACATATCTCTTACAAAATATGAAATTTTCCTCCATTTTTTTTTGCTTTCCTTTCCTGGAACGTCGCATTTCTTGTTTATGAGATTCTTACCTTCTTTCATCGTCTCTCTTTCAGGGGTTATGTCGGAATTCATAGTTCGGGATTCAGAGACTTTCTATTGAAGCCAGAGCTTCTCCGTGCGATTGTAGACTCTGGATTTGAGCATCCATCTGAAGGCAAATTTCTAACTTTTATTCGAAACCCTTGAATCGTAACTCAAATTGGCCATTTAATTTAAATTGGCACTGTTTGTCTTAAGTTTTCTATTAGCAGGATTTTAAAGAAACGACTTTAAGTTTGTAGAGGTGCTGTAGCTCACTAACCTGCACTAAATGCCTGTTAAGTTTGGTTTCTTTTTTGGAGTTCCTAAGTATTGGTTGTAATTGAGTTCTGTATAGGAATTATCAACTTATGACGTCATAAATGGGATAAAGTGAATTGAATGTTGCTCTGGTATGTTTTTGCGAAGGGGTCTGTAGCTCATCAAGGAGACCTACCGTGTTCCGAAGCACAGTTTTTCATGTGTTTGTAACAATGGTTTACTGGTTCCTCGAGAACACATGATGCTATAAAATTATAACCTTGTTTCTAGTAGAGAGAAACTTGTTGACACGTCTCTTGAGCAGAGTATAATTTGCATGGATGAACGCACAGCTTGGAAAACTTTTCTTTCTTGAATAACATTGACTATGCAGTTTCCATGGGCTCTCGTTTCTTTCATAGACAATTATGTCCTCAGTGCTTAAGTACTTGCTCTTTATAACCAGTCCATCTTAGATGTTTATACCAGTTGTTTAATGGTTT

mRNA sequence

GGAAAGGGTATTTTGGGCAAATCGTAAAAGTATTCCGCCTTTATAATGGGGCTTCATTTGTTGGAACCCTAATAATCCCCTTCGGCTCTTCCGCTCTCACACTCTACGATCTTTGGAAAAGCCAGGTCTTAACAATTTCTCTCCAGCTAACTTAGTTTTCCTTTGCAGACTTTGTGTAATCGCAACCCCAACTCTCAACTTCAGTTCTTAGCAGGCTAGCAGGAAGAAATGGGAGAAACAAGAGACAACGAATATGAGGAAGAGCTCCTCGACTACGAGGAAGAAGAAGAGAAGGCCCCCGATTCCGTTGGAGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGTTATGTCGGAATTCATAGTTCGGGATTCAGAGACTTTCTATTGAAGCCAGAGCTTCTCCGTGCGATTGTAGACTCTGGATTTGAGCATCCATCTGAAGGCAAATTTCTAACTTTTATTCGAAACCCTTGAATCGTAACTCAAATTGGCCATTTAATTTAAATTGGCACTGTTTGTCTTAAGTTTTCTATTAGCAGGATTTTAAAGAAACGACTTTAAGTTTGTAGAGGTGCTGTAGCTCACTAACCTGCACTAAATGCCTGTTAAGTTTGGTTTCTTTTTTGGAGTTCCTAAGTATTGGTTGTAATTGAGTTCTGTATAGGAATTATCAACTTATGACGTCATAAATGGGATAAAGTGAATTGAATGTTGCTCTGGTATGTTTTTGCGAAGGGGTCTGTAGCTCATCAAGGAGACCTACCGTGTTCCGAAGCACAGTTTTTCATGTGTTTGTAACAATGGTTTACTGGTTCCTCGAGAACACATGATGCTATAAAATTATAACCTTGTTTCTAGTAGAGAGAAACTTGTTGACACGTCTCTTGAGCAGAGTATAATTTGCATGGATGAACGCACAGCTTGGAAAACTTTTCTTTCTTGAATAACATTGACTATGCAGTTTCCATGGGCTCTCGTTTCTTTCATAGACAATTATGTCCTCAGTGCTTAAGTACTTGCTCTTTATAACCAGTCCATCTTAGATGTTTATACCAGTTGTTTAATGGTTT

Coding sequence (CDS)

ATGGGAGAAACAAGAGACAACGAATATGAGGAAGAGCTCCTCGACTACGAGGAAGAAGAAGAGAAGGCCCCCGATTCCGTTGGAGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGTTATGTCGGAATTCATAGTTCGGGATTCAGAGACTTTCTATTGAAGCCAGAGCTTCTCCGTGCGATTGTAGACTCTGGATTTGAGCATCCATCTGAAGGCAAATTTCTAACTTTTATTCGAAACCCTTGA

Protein sequence

MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKFLTFIRNP

Homology

[Close]

BLAST of Cmc03g0079501 vs. NCBI nr
Match: MBA0634761.1 (hypothetical protein [Gossypium davidsonii] >MBA0867947.1 hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 144.8 bits (364), Expect = 3.2e-31
Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLR 60
          MGETRDN+ YEEELLDYEEEEEKAPDSV AKVNGEAGKKGYVGIHSSGFRDFLLKPELLR
Sbjct: 1  MGETRDNDAYEEELLDYEEEEEKAPDSVTAKVNGEAGKKGYVGIHSSGFRDFLLKPELLR 60

Query: 61 AIVDSGFEHPSEGKFLT 77
          AIVDSGFEHPSEGKFLT
Sbjct: 61 AIVDSGFEHPSEGKFLT 77

[Close]

BLAST of Cmc03g0079501 vs. NCBI nr
Match: KAG6585467.1 (DEAD-box ATP-dependent RNA helicase 56, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 143.3 bits (360), Expect = 9.3e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA 60
          MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA
Sbjct: 18 MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA 77

Query: 61 IVDSGFEHPSE 72
          IVDSGFEHPSE
Sbjct: 78 IVDSGFEHPSE 88

[Close]

BLAST of Cmc03g0079501 vs. NCBI nr
Match: XP_023537959.1 (DEAD-box ATP-dependent RNA helicase 56-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023537960.1 DEAD-box ATP-dependent RNA helicase 56-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 143.3 bits (360), Expect = 9.3e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA 60
          MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA
Sbjct: 1  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA 60

Query: 61 IVDSGFEHPSE 72
          IVDSGFEHPSE
Sbjct: 61 IVDSGFEHPSE 71

[Close]

BLAST of Cmc03g0079501 vs. NCBI nr
Match: XP_022951402.1 (DEAD-box ATP-dependent RNA helicase 56-like [Cucurbita moschata] >XP_022951403.1 DEAD-box ATP-dependent RNA helicase 56-like [Cucurbita moschata] >XP_023002354.1 DEAD-box ATP-dependent RNA helicase 56 [Cucurbita maxima] >XP_023002355.1 DEAD-box ATP-dependent RNA helicase 56 [Cucurbita maxima] >XP_023537961.1 DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 143.3 bits (360), Expect = 9.3e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA 60
          MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA
Sbjct: 1  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA 60

Query: 61 IVDSGFEHPSE 72
          IVDSGFEHPSE
Sbjct: 61 IVDSGFEHPSE 71

[Close]

BLAST of Cmc03g0079501 vs. NCBI nr
Match: XP_022961952.1 (DEAD-box ATP-dependent RNA helicase 56 [Cucurbita moschata] >XP_022961953.1 DEAD-box ATP-dependent RNA helicase 56 [Cucurbita moschata] >XP_023545958.1 DEAD-box ATP-dependent RNA helicase 56 [Cucurbita pepo subsp. pepo] >XP_023545959.1 DEAD-box ATP-dependent RNA helicase 56 [Cucurbita pepo subsp. pepo] >KAG7029510.1 DEAD-box ATP-dependent RNA helicase 56 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.3 bits (360), Expect = 9.3e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA 60
          MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA
Sbjct: 1  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA 60

Query: 61 IVDSGFEHPSE 72
          IVDSGFEHPSE
Sbjct: 61 IVDSGFEHPSE 71

[Close]

BLAST of Cmc03g0079501 vs. ExPASy Swiss-Prot
Match: Q56XG6 (DEAD-box ATP-dependent RNA helicase 15 OS=Arabidopsis thaliana OX=3702 GN=RH15 PE=1 SV=3)

HSP 1 Score: 120.6 bits (301), Expect = 8.5e-27
Identity = 64/72 (88.89%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 1  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLR 60
          MG+ RDNE YEEELLDYEEE+EK PDS G KVNGEA KKGYVGIHSSGFRDFLLKPELLR
Sbjct: 1  MGDARDNEAYEEELLDYEEEDEKVPDS-GNKVNGEAVKKGYVGIHSSGFRDFLLKPELLR 60

Query: 61 AIVDSGFEHPSE 72
          AIVDSGFEHPSE
Sbjct: 61 AIVDSGFEHPSE 71

[Close]

BLAST of Cmc03g0079501 vs. ExPASy Swiss-Prot
Match: Q9LFN6 (DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana OX=3702 GN=RH56 PE=1 SV=2)

HSP 1 Score: 120.6 bits (301), Expect = 8.5e-27
Identity = 64/72 (88.89%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 1  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLR 60
          MG+ RDNE YEEELLDYEEE+EK PDS G KVNGEA KKGYVGIHSSGFRDFLLKPELLR
Sbjct: 1  MGDARDNEAYEEELLDYEEEDEKVPDS-GNKVNGEAVKKGYVGIHSSGFRDFLLKPELLR 60

Query: 61 AIVDSGFEHPSE 72
          AIVDSGFEHPSE
Sbjct: 61 AIVDSGFEHPSE 71

[Close]

BLAST of Cmc03g0079501 vs. ExPASy Swiss-Prot
Match: Q5JK84 (DEAD-box ATP-dependent RNA helicase 15 OS=Oryza sativa subsp. japonica OX=39947 GN=AIP2 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.5e-18
Identity = 51/72 (70.83%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 3  ETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAG--KKGYVGIHSSGFRDFLLKPELLR 62
          E +DNE YEE+L+DYEEE E   D   A  N  A   KKGYVGIHSSGFRDFLLKPELLR
Sbjct: 5  EVKDNEVYEEDLVDYEEEVENGADGGAAAANASADVVKKGYVGIHSSGFRDFLLKPELLR 64

Query: 63 AIVDSGFEHPSE 72
          AI D GFEHPSE
Sbjct: 65 AIQDCGFEHPSE 76

[Close]

BLAST of Cmc03g0079501 vs. ExPASy Swiss-Prot
Match: Q0JM17 (DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sativa subsp. japonica OX=39947 GN=AIP1 PE=1 SV=2)

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-17
Identity = 50/72 (69.44%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 3  ETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAG--KKGYVGIHSSGFRDFLLKPELLR 62
          E +DNE YEE+L+DYEEE E   D      N  A   KKGYVGIHSSGFRDFLLKPELLR
Sbjct: 5  EVKDNEVYEEDLVDYEEEVENGTDGGANAANASADVVKKGYVGIHSSGFRDFLLKPELLR 64

Query: 63 AIVDSGFEHPSE 72
          AI D GFEHPSE
Sbjct: 65 AIQDCGFEHPSE 76

[Close]

BLAST of Cmc03g0079501 vs. ExPASy Swiss-Prot
Match: O13792 (ATP-dependent RNA helicase uap56 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=uap56 PE=1 SV=3)

HSP 1 Score: 81.6 bits (200), Expect = 4.4e-15
Identity = 46/72 (63.89%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 10 EEELLDYEEEEEKAPDSVGAKV--------NGE-AGKKG-YVGIHSSGFRDFLLKPELLR 69
          +E+L+DYEEEEE   D    ++        NGE + KKG YVGIHS+GFRDFLLKPELLR
Sbjct: 5  QEDLIDYEEEEELVQDQPAQEITPAADTAENGEKSDKKGSYVGIHSTGFRDFLLKPELLR 64

Query: 70 AIVDSGFEHPSE 72
          AI DSGFEHPSE
Sbjct: 65 AITDSGFEHPSE 76

[Close]

BLAST of Cmc03g0079501 vs. ExPASy TrEMBL
Match: A0A7J9MAS8 (Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_006372 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.5e-31
Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLR 60
          MGETRDN+ YEEELLDYEEEEEKAPDSV AKVNGEAGKKGYVGIHSSGFRDFLLKPELLR
Sbjct: 1  MGETRDNDAYEEELLDYEEEEEKAPDSVTAKVNGEAGKKGYVGIHSSGFRDFLLKPELLR 60

Query: 61 AIVDSGFEHPSEGKFLT 77
          AIVDSGFEHPSEGKFLT
Sbjct: 61 AIVDSGFEHPSEGKFLT 77

[Close]

BLAST of Cmc03g0079501 vs. ExPASy TrEMBL
Match: A0A7J8T8R2 (Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_022369 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.5e-31
Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLR 60
          MGETRDN+ YEEELLDYEEEEEKAPDSV AKVNGEAGKKGYVGIHSSGFRDFLLKPELLR
Sbjct: 1  MGETRDNDAYEEELLDYEEEEEKAPDSVTAKVNGEAGKKGYVGIHSSGFRDFLLKPELLR 60

Query: 61 AIVDSGFEHPSEGKFLT 77
          AIVDSGFEHPSEGKFLT
Sbjct: 61 AIVDSGFEHPSEGKFLT 77

[Close]

BLAST of Cmc03g0079501 vs. ExPASy TrEMBL
Match: A0A6J1KNP7 (DEAD-box ATP-dependent RNA helicase 56 OS=Cucurbita maxima OX=3661 GN=LOC111496219 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.5e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA 60
          MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA
Sbjct: 1  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA 60

Query: 61 IVDSGFEHPSE 72
          IVDSGFEHPSE
Sbjct: 61 IVDSGFEHPSE 71

[Close]

BLAST of Cmc03g0079501 vs. ExPASy TrEMBL
Match: A0A1S3BC35 (DEAD-box ATP-dependent RNA helicase 56 OS=Cucumis melo OX=3656 GN=LOC103488306 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.5e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA 60
          MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA
Sbjct: 1  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA 60

Query: 61 IVDSGFEHPSE 72
          IVDSGFEHPSE
Sbjct: 61 IVDSGFEHPSE 71

[Close]

BLAST of Cmc03g0079501 vs. ExPASy TrEMBL
Match: A0A6J1BTR7 (DEAD-box ATP-dependent RNA helicase 56 OS=Momordica charantia OX=3673 GN=LOC111004723 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.5e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA 60
          MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA
Sbjct: 1  MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA 60

Query: 61 IVDSGFEHPSE 72
          IVDSGFEHPSE
Sbjct: 61 IVDSGFEHPSE 71

[Close]

BLAST of Cmc03g0079501 vs. TAIR 10
Match: AT5G11200.1 (DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 120.6 bits (301), Expect = 6.0e-28
Identity = 64/72 (88.89%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 1  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLR 60
          MG+ RDNE YEEELLDYEEE+EK PDS G KVNGEA KKGYVGIHSSGFRDFLLKPELLR
Sbjct: 1  MGDARDNEAYEEELLDYEEEDEKVPDS-GNKVNGEAVKKGYVGIHSSGFRDFLLKPELLR 60

Query: 61 AIVDSGFEHPSE 72
          AIVDSGFEHPSE
Sbjct: 61 AIVDSGFEHPSE 71

[Close]

BLAST of Cmc03g0079501 vs. TAIR 10
Match: AT5G11170.1 (DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 120.6 bits (301), Expect = 6.0e-28
Identity = 64/72 (88.89%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 1  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLR 60
          MG+ RDNE YEEELLDYEEE+EK PDS G KVNGEA KKGYVGIHSSGFRDFLLKPELLR
Sbjct: 1  MGDARDNEAYEEELLDYEEEDEKVPDS-GNKVNGEAVKKGYVGIHSSGFRDFLLKPELLR 60

Query: 61 AIVDSGFEHPSE 72
          AIVDSGFEHPSE
Sbjct: 61 AIVDSGFEHPSE 71

[Close]

BLAST of Cmc03g0079501 vs. TAIR 10
Match: AT5G11200.2 (DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 120.6 bits (301), Expect = 6.0e-28
Identity = 64/72 (88.89%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 1  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLR 60
          MG+ RDNE YEEELLDYEEE+EK PDS G KVNGEA KKGYVGIHSSGFRDFLLKPELLR
Sbjct: 1  MGDARDNEAYEEELLDYEEEDEKVPDS-GNKVNGEAVKKGYVGIHSSGFRDFLLKPELLR 60

Query: 61 AIVDSGFEHPSE 72
          AIVDSGFEHPSE
Sbjct: 61 AIVDSGFEHPSE 71

[Close]

BLAST of Cmc03g0079501 vs. TAIR 10
Match: AT5G11200.3 (DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 120.6 bits (301), Expect = 6.0e-28
Identity = 64/72 (88.89%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 1  MGETRDNE-YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLR 60
          MG+ RDNE YEEELLDYEEE+EK PDS G KVNGEA KKGYVGIHSSGFRDFLLKPELLR
Sbjct: 1  MGDARDNEAYEEELLDYEEEDEKVPDS-GNKVNGEAVKKGYVGIHSSGFRDFLLKPELLR 60

Query: 61 AIVDSGFEHPSE 72
          AIVDSGFEHPSE
Sbjct: 61 AIVDSGFEHPSE 71

The following BLAST results are available for this feature:

BLAST of Cmc03g0079501 vs. NCBI nr


Match Name	E-value	Identity	Description
MBA0634761.1	3.2e-31	96.10	hypothetical protein [Gossypium davidsonii] >MBA0867947.1 hypothetical protein [...	[more]
KAG6585467.1	9.3e-31	100.00	DEAD-box ATP-dependent RNA helicase 56, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_023537959.1	9.3e-31	100.00	DEAD-box ATP-dependent RNA helicase 56-like isoform X1 [Cucurbita pepo subsp. pe...	[more]
XP_022951402.1	9.3e-31	100.00	DEAD-box ATP-dependent RNA helicase 56-like [Cucurbita moschata] >XP_022951403.1...	[more]
XP_022961952.1	9.3e-31	100.00	DEAD-box ATP-dependent RNA helicase 56 [Cucurbita moschata] >XP_022961953.1 DEAD...	[more]

BLAST of Cmc03g0079501 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q56XG6	8.5e-27	88.89	DEAD-box ATP-dependent RNA helicase 15 OS=Arabidopsis thaliana OX=3702 GN=RH15 P...	[more]
Q9LFN6	8.5e-27	88.89	DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana OX=3702 GN=RH56 P...	[more]
Q5JK84	2.5e-18	70.83	DEAD-box ATP-dependent RNA helicase 15 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q0JM17	1.2e-17	69.44	DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
O13792	4.4e-15	63.89	ATP-dependent RNA helicase uap56 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]

BLAST of Cmc03g0079501 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J9MAS8	1.5e-31	96.10	Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_006372 PE=4...	[more]
A0A7J8T8R2	1.5e-31	96.10	Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_022369 PE=4 SV...	[more]
A0A6J1KNP7	4.5e-31	100.00	DEAD-box ATP-dependent RNA helicase 56 OS=Cucurbita maxima OX=3661 GN=LOC1114962...	[more]
A0A1S3BC35	4.5e-31	100.00	DEAD-box ATP-dependent RNA helicase 56 OS=Cucumis melo OX=3656 GN=LOC103488306 P...	[more]
A0A6J1BTR7	4.5e-31	100.00	DEAD-box ATP-dependent RNA helicase 56 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of Cmc03g0079501 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11200.1	6.0e-28	88.89	DEAD/DEAH box RNA helicase family protein	[more]
AT5G11170.1	6.0e-28	88.89	DEAD/DEAH box RNA helicase family protein	[more]
AT5G11200.2	6.0e-28	88.89	DEAD/DEAH box RNA helicase family protein	[more]
AT5G11200.3	6.0e-28	88.89	DEAD/DEAH box RNA helicase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	PANTHER	PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	coord: 25..75
None	No IPR available	PANTHER	PTHR47958:SF20	BNACNNG20150D PROTEIN	coord: 25..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0079501.1	Cmc03g0079501.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0050896	response to stimulus
cellular_component	GO:0016020	membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003724	RNA helicase activity