Cmc03g0075871 (gene) Melon (Charmono) v1.1

Overview
NameCmc03g0075871
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionU4/U6 small nuclear ribonucleoprotein PRP4-like protein
LocationCMiso1.1chr03: 23156943 .. 23157866 (-)
RNA-Seq ExpressionCmc03g0075871
SyntenyCmc03g0075871
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGAAATGGAAAGATGGGATAGGTTGCGGTCGATAATGGCACGATTGGATGCTGAAGGGCAATTAGAGAAGCTCATGAAATTTCATGAGGAAGAGGAGGCTGCAGCTACTGGTGGAACTGAGGAGGAGGTGCTTCAGTATCCCTTTTATACTGAGGGGTCCAAAGCTCTCTTGGATGCAAGAATTGATGTTGCATAGTATTCCATTCTAGGAGCATCTTCACACCTTGAGCGTGCAAAGAGGAAACGAGATGACCCTGTTGAAGATGTGGAAGCGGAAATGGATTGGGCTCTGAGGCAGGCTGAAAGTTTGGTCCTGGACTGTAGTTAGATAGGAGATGATCGACCACTTTCTGGTTGTTCTTTTTCGTCTGATGGAAAATTTCTTGCCACTAGGTAAATCTTCTCAGTTTGCTGTTAATGATTTTTAGCTACTGTACCAGTTTCTCCTTTTCAATATCTACCCCCGTTTTACCTCTTGGTAGAAGGGGGAAAAAGAAAAAGAAAACATAATAGATCTTTGTGGCTATAGATTAGCTATTATCTTCCTACTTAGCTTTACTTCCTCAGTTGAACACAAGACCAAAGATAAAATAGAAGTGAATGTTTTTCCATTTTTCTTTCCAGTACGTGATAAGCTTTATAGGCTTTGTATTTAGCTTTCATTTACTACTGGCTTTGCATTTGATGGTTTCTGTATTTTTTTTTCTTGTTTTATTTCTATAGTTCATTGAGTGGAGTTGCAAAATTGTGGAGCATGCCTCAAATAAGGAAAGTTTCCAACTTTAAGGGACACACAGAGCGTGTTACTGATGTAATGTTTTCTCCAGTGAATGAGTGTTTAGCAACTGCCTCTGCTGACCGAACTGCAAGGTTGTGGTCTGCCGGAAGGATCTCTACTTAAAACATTTGAGGGCCATCTAGAC

mRNA sequence

GAGAAATGGAAAGATGGGATAGGTTGCGGTCGATAATGGCACGATTGGATGCTGAAGGGCAATTAGAGAAGCTCATGAAATTTCATGAGGAAGAGGAGGCTGCAGCTACTGGTGGAACTGAGGAGGAGGTGCTTCAGTATCCCTTTTATACTGAGGGGTCCAAAGCTCTCTTGGATGCAAGAATTGATGTTGCATAGTATTCCATTCTAGGAGCATCTTCACACCTTGAGCGTGCAAAGAGGAAACGAGATGACCCTGTTGAAGATGTGGAAGCGGAAATGGATTGGGCTCTGAGGCAGGCTGAAAGTTTGGTCCTGGACTGTAGTTAGATAGGAGATGATCGACCACTTTCTGGTTGTTCTTTTTCGTCTGATGGAAAATTTCTTGCCACTAGTTCATTGAGTGGAGTTGCAAAATTGTGGAGCATGCCTCAAATAAGGAAAGTTTCCAACTTTAAGGGACACACAGAGCGTGTTACTGATGTAATGTTTTCTCCAGTGAATGAGTGTTTAGCAACTGCCTCTGCTGACCGAACTGCAAGGTTGTGGTCTGCCGGAAGGATCTCTACTTAAAACATTTGAGGGCCATCTAGAC

Coding sequence (CDS)

ATGGAAAGATGGGATAGGTTGCGGTCGATAATGGCACGATTGGATGCTGAAGGGCAATTAGAGAAGCTCATGAAATTTCATGAGGAAGAGGAGGCTGCAGCTACTGGTGGAACTGAGGAGGAGGTGCTTCAGTATCCCTTTTATACTGAGGGGTCCAAAGCTCTCTTGGATGCAAGAATTGATGTTGCATAG

Protein sequence

MERWDRLRSIMARLDAEGQLEKLMKFHEEEEAAATGGTEEEVLQYPFYTEGSKALLDARIDVA
Homology
[Close]
BLAST of Cmc03g0075871 vs. NCBI nr
Match: XP_004146749.1 (U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucumis sativus] >XP_031742738.1 U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucumis sativus] >KGN47802.1 hypothetical protein Csa_003570 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 2.3e-21
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 1   MERWDRLRSIMARLDAEGQLEKLMKFHEEEEAAATGGT---EEEVLQYPFYTEGSKALLD 60
           MER DRLRSIMARLDAEGQLEKLMK HEEEEAAATGGT   EEEVLQYPFYTEGSKALLD
Sbjct: 163 MERRDRLRSIMARLDAEGQLEKLMKVHEEEEAAATGGTEEAEEEVLQYPFYTEGSKALLD 222

Query: 61  ARIDVA 64
           ARID+A
Sbjct: 223 ARIDIA 228

[Close]
BLAST of Cmc03g0075871 vs. NCBI nr
Match: XP_038885479.1 (U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Benincasa hispida] >XP_038885480.1 U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Benincasa hispida])

HSP 1 Score: 111.7 bits (278), Expect = 2.3e-21
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 1   MERWDRLRSIMARLDAEGQLEKLMKFHEEEEAAATGGT---EEEVLQYPFYTEGSKALLD 60
           MER DRLRSIMARLDAEGQLEKLMK HEEEEAAATGGT   EEEVLQYPFYTEGSKALLD
Sbjct: 163 MERRDRLRSIMARLDAEGQLEKLMKVHEEEEAAATGGTEEAEEEVLQYPFYTEGSKALLD 222

Query: 61  ARIDVA 64
           ARID+A
Sbjct: 223 ARIDIA 228

[Close]
BLAST of Cmc03g0075871 vs. NCBI nr
Match: XP_008464716.1 (PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucumis melo] >XP_016903247.1 PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucumis melo] >XP_016903248.1 PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucumis melo] >XP_016903249.1 PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 2.3e-21
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 1   MERWDRLRSIMARLDAEGQLEKLMKFHEEEEAAATGGT---EEEVLQYPFYTEGSKALLD 60
           MER DRLRSIMARLDAEGQLEKLMK HEEEEAAATGGT   EEEVLQYPFYTEGSKALLD
Sbjct: 163 MERRDRLRSIMARLDAEGQLEKLMKVHEEEEAAATGGTEEAEEEVLQYPFYTEGSKALLD 222

Query: 61  ARIDVA 64
           ARID+A
Sbjct: 223 ARIDIA 228

[Close]
BLAST of Cmc03g0075871 vs. NCBI nr
Match: KAA0040989.1 (U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucumis melo var. makuwa] >TYK20339.1 U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 2.3e-21
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 1   MERWDRLRSIMARLDAEGQLEKLMKFHEEEEAAATGGT---EEEVLQYPFYTEGSKALLD 60
           MER DRLRSIMARLDAEGQLEKLMK HEEEEAAATGGT   EEEVLQYPFYTEGSKALLD
Sbjct: 163 MERRDRLRSIMARLDAEGQLEKLMKVHEEEEAAATGGTEEAEEEVLQYPFYTEGSKALLD 222

Query: 61  ARIDVA 64
           ARID+A
Sbjct: 223 ARIDIA 228

[Close]
BLAST of Cmc03g0075871 vs. NCBI nr
Match: XP_023525233.1 (U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108.6 bits (270), Expect = 2.0e-20
Identity = 58/66 (87.88%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 1   MERWDRLRSIMARLDAEGQLEKLMKFHEEEEAAATGGT---EEEVLQYPFYTEGSKALLD 60
           MER DRLRSIMARLDAEGQLEKL+K HEEEEAAATGGT   EEEVLQYPFYTEG KALLD
Sbjct: 164 MERRDRLRSIMARLDAEGQLEKLLKVHEEEEAAATGGTEEAEEEVLQYPFYTEGPKALLD 223

Query: 61  ARIDVA 64
           ARID+A
Sbjct: 224 ARIDIA 229

[Close]
BLAST of Cmc03g0075871 vs. ExPASy Swiss-Prot
Match: O22212 (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana OX=3702 GN=LIS PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.1e-09
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 0 

Query: 1   MERWDRLRSIMARLDAEGQLEKLMKFHEEEEAAATGGTEEEVLQYPFYTEGSKALLDARI 60
           MER  RL  ++ R D  GQL+KL+K H EE+       ++EVL+YPF+TEG K L +ARI
Sbjct: 145 MERRARLTQLLTRYDINGQLDKLVKDH-EEDVTPKEEVDDEVLEYPFFTEGPKELREARI 204

Query: 61  DVA 64
           ++A
Sbjct: 205 EIA 206

[Close]
BLAST of Cmc03g0075871 vs. ExPASy TrEMBL
Match: A0A1S4E4U8 (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Cucumis melo OX=3656 GN=LOC103502534 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 1   MERWDRLRSIMARLDAEGQLEKLMKFHEEEEAAATGGT---EEEVLQYPFYTEGSKALLD 60
           MER DRLRSIMARLDAEGQLEKLMK HEEEEAAATGGT   EEEVLQYPFYTEGSKALLD
Sbjct: 163 MERRDRLRSIMARLDAEGQLEKLMKVHEEEEAAATGGTEEAEEEVLQYPFYTEGSKALLD 222

Query: 61  ARIDVA 64
           ARID+A
Sbjct: 223 ARIDIA 228

[Close]
BLAST of Cmc03g0075871 vs. ExPASy TrEMBL
Match: A0A5A7TI50 (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold228G00300 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 1   MERWDRLRSIMARLDAEGQLEKLMKFHEEEEAAATGGT---EEEVLQYPFYTEGSKALLD 60
           MER DRLRSIMARLDAEGQLEKLMK HEEEEAAATGGT   EEEVLQYPFYTEGSKALLD
Sbjct: 163 MERRDRLRSIMARLDAEGQLEKLMKVHEEEEAAATGGTEEAEEEVLQYPFYTEGSKALLD 222

Query: 61  ARIDVA 64
           ARID+A
Sbjct: 223 ARIDIA 228

[Close]
BLAST of Cmc03g0075871 vs. ExPASy TrEMBL
Match: A0A0A0KHD8 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G404170 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 1   MERWDRLRSIMARLDAEGQLEKLMKFHEEEEAAATGGT---EEEVLQYPFYTEGSKALLD 60
           MER DRLRSIMARLDAEGQLEKLMK HEEEEAAATGGT   EEEVLQYPFYTEGSKALLD
Sbjct: 163 MERRDRLRSIMARLDAEGQLEKLMKVHEEEEAAATGGTEEAEEEVLQYPFYTEGSKALLD 222

Query: 61  ARIDVA 64
           ARID+A
Sbjct: 223 ARIDIA 228

[Close]
BLAST of Cmc03g0075871 vs. ExPASy TrEMBL
Match: A0A6J1KDQ7 (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Cucurbita maxima OX=3661 GN=LOC111493950 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.6e-21
Identity = 58/66 (87.88%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 1   MERWDRLRSIMARLDAEGQLEKLMKFHEEEEAAATGGT---EEEVLQYPFYTEGSKALLD 60
           MER DRLRSIMARLDAEGQLEKL+K HEEEEAAATGGT   EEEVLQYPFYTEG KALLD
Sbjct: 164 MERRDRLRSIMARLDAEGQLEKLLKVHEEEEAAATGGTEEAEEEVLQYPFYTEGPKALLD 223

Query: 61  ARIDVA 64
           ARID+A
Sbjct: 224 ARIDIA 229

[Close]
BLAST of Cmc03g0075871 vs. ExPASy TrEMBL
Match: A0A6J1G322 (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Cucurbita moschata OX=3662 GN=LOC111450343 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.6e-21
Identity = 58/66 (87.88%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 1   MERWDRLRSIMARLDAEGQLEKLMKFHEEEEAAATGGT---EEEVLQYPFYTEGSKALLD 60
           MER DRLRSIMARLDAEGQLEKL+K HEEEEAAATGGT   EEEVLQYPFYTEG KALLD
Sbjct: 164 MERRDRLRSIMARLDAEGQLEKLLKVHEEEEAAATGGTEEAEEEVLQYPFYTEGPKALLD 223

Query: 61  ARIDVA 64
           ARID+A
Sbjct: 224 ARIDIA 229

[Close]
BLAST of Cmc03g0075871 vs. TAIR 10
Match: AT2G41500.1 (WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related )

HSP 1 Score: 60.5 bits (145), Expect = 5.7e-10
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 0 

Query: 1   MERWDRLRSIMARLDAEGQLEKLMKFHEEEEAAATGGTEEEVLQYPFYTEGSKALLDARI 60
           MER  RL  ++ R D  GQL+KL+K H EE+       ++EVL+YPF+TEG K L +ARI
Sbjct: 145 MERRARLTQLLTRYDINGQLDKLVKDH-EEDVTPKEEVDDEVLEYPFFTEGPKELREARI 204

Query: 61  DVA 64
           ++A
Sbjct: 205 EIA 206

The following BLAST results are available for this feature:
BLAST of Cmc03g0075871 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146749.12.3e-2190.91U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucumis sativus] >XP_03... [more]
XP_038885479.12.3e-2190.91U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Benincasa hispida] >XP_... [more]
XP_008464716.12.3e-2190.91PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucumis melo... [more]
KAA0040989.12.3e-2190.91U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucumis melo var. makuw... [more]
XP_023525233.12.0e-2087.88U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucurbita pepo subsp. p... [more]
BLAST of Cmc03g0075871 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O222128.1e-0949.21U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana ... [more]
BLAST of Cmc03g0075871 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4E4U81.1e-2190.91U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Cucumis melo OX=3656 ... [more]
A0A5A7TI501.1e-2190.91U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Cucumis melo var. mak... [more]
A0A0A0KHD81.1e-2190.91WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G... [more]
A0A6J1KDQ79.6e-2187.88U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Cucurbita maxima OX=3... [more]
A0A6J1G3229.6e-2187.88U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Cucurbita moschata OX... [more]
BLAST of Cmc03g0075871 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G41500.15.7e-1049.21WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc03g0075871.1Cmc03g0075871.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity
cellular_component GO:1990904 ribonucleoprotein complex