Cmc03g0073731 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0073731
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty1-copia retrotransposon protein
Location	CMiso1.1chr03: 21238271 .. 21239041 (+)
RNA-Seq Expression	Cmc03g0073731
Synteny	Cmc03g0073731

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTAAAATTCAAGGCAAAACCTGAGAATCAGTTAGGAAAAAGGATAAAAAGATTAAGATCAGATAGAGGTGGTGAGTATTCCGATAAAACGCTTAAAGAATTTTGTGAATCAAATGGTATCATCCATGAATTTACTGCTCCTTACTCACCACAACAAAATGGCATAGCAGAACGAAAAAATAGAACTCTTAAAGAAATGATGAATGCCATGTTATCAAGCTCCGACCTATCTGATAATATGTGGGGGGAAGCCGTGTTGTCTGCATGTTTTATTCTTAACAGGATTCCCCACAAAAGGCTAGACAAAACTCCATACGAACTCTGGAAAGGACATGCACCAAATCTTTCCTACCTAAAGGTTTGGGGATGCTTGGCTAAGGTACCATTTCCTGCATTGAAGAAAACTACGGTAGGATCTAAAACCTTTGACTGCATTTTTATCGAGTATGCTCAAAATAGTGCTGCATATAGGTTTATGTGTTTAAATGACAAAACTATAAACGAATCTAGAGATGCAGAATTCTTTGAGCAGGTTTTTCCGTTAAAACAATCATTGTATGCTCCTAGCCTATCTAACAGAATGCATGATTCTGAAATCGTTAGTGAAACACCTGGTTCTGAAACTGTTGATACTCCAAACCTAAGTTGTGAATTAGAACTTAGGAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTCGGTCCAGATTTCCTAAGCACCTTCATAGTGGAAAAGCGTGATGAAATTGACTGTAACTTCATAAGATGA

mRNA sequence

ATGTTCTTAAAATTCAAGGCAAAACCTGAGAATCAGTTAGGAAAAAGGATAAAAAGATTAAGATCAGATAGAGGTGGTGAGTATTCCGATAAAACGCTTAAAGAATTTTGTGAATCAAATGGTATCATCCATGAATTTACTGCTCCTTACTCACCACAACAAAATGGCATAGCAGAACGAAAAAATAGAACTCTTAAAGAAATGATGAATGCCATGTTATCAAGCTCCGACCTATCTGATAATATGTGGGGGGAAGCCGTGTTGTCTGCATGTTTTATTCTTAACAGGATTCCCCACAAAAGGCTAGACAAAACTCCATACGAACTCTGGAAAGGACATGCACCAAATCTTTCCTACCTAAAGGTTTGGGGATGCTTGGCTAAGGTACCATTTCCTGCATTGAAGAAAACTACGGTAGGATCTAAAACCTTTGACTGCATTTTTATCGAGTATGCTCAAAATAGTGCTGCATATAGGTTTATGTGTTTAAATGACAAAACTATAAACGAATCTAGAGATGCAGAATTCTTTGAGCAGGTTTTTCCGTTAAAACAATCATTGTATGCTCCTAGCCTATCTAACAGAATGCATGATTCTGAAATCGTTAGTGAAACACCTGGTTCTGAAACTGTTGATACTCCAAACCTAAGTTGTGAATTAGAACTTAGGAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTCGGTCCAGATTTCCTAAGCACCTTCATAGTGGAAAAGCGTGATGAAATTGACTGTAACTTCATAAGATGA

Coding sequence (CDS)

ATGTTCTTAAAATTCAAGGCAAAACCTGAGAATCAGTTAGGAAAAAGGATAAAAAGATTAAGATCAGATAGAGGTGGTGAGTATTCCGATAAAACGCTTAAAGAATTTTGTGAATCAAATGGTATCATCCATGAATTTACTGCTCCTTACTCACCACAACAAAATGGCATAGCAGAACGAAAAAATAGAACTCTTAAAGAAATGATGAATGCCATGTTATCAAGCTCCGACCTATCTGATAATATGTGGGGGGAAGCCGTGTTGTCTGCATGTTTTATTCTTAACAGGATTCCCCACAAAAGGCTAGACAAAACTCCATACGAACTCTGGAAAGGACATGCACCAAATCTTTCCTACCTAAAGGTTTGGGGATGCTTGGCTAAGGTACCATTTCCTGCATTGAAGAAAACTACGGTAGGATCTAAAACCTTTGACTGCATTTTTATCGAGTATGCTCAAAATAGTGCTGCATATAGGTTTATGTGTTTAAATGACAAAACTATAAACGAATCTAGAGATGCAGAATTCTTTGAGCAGGTTTTTCCGTTAAAACAATCATTGTATGCTCCTAGCCTATCTAACAGAATGCATGATTCTGAAATCGTTAGTGAAACACCTGGTTCTGAAACTGTTGATACTCCAAACCTAAGTTGTGAATTAGAACTTAGGAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTCGGTCCAGATTTCCTAAGCACCTTCATAGTGGAAAAGCGTGATGAAATTGACTGTAACTTCATAAGATGA

Protein sequence

MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQVFPLKQSLYAPSLSNRMHDSEIVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVEKRDEIDCNFIR

Homology

[Close]

BLAST of Cmc03g0073731 vs. NCBI nr
Match: TYK07244.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 497.3 bits (1279), Expect = 8.0e-137
Identity = 243/254 (95.67%), Postives = 246/254 (96.85%), Query Frame = 0


Query: 1   MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 60
           MFLKFKA+ ENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER
Sbjct: 465 MFLKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 524

Query: 61  KNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 120
           KNRTLKEMMNAML SS LSDNMWGEAVLSACFILNRIPHKRLDK PYEL KGHAPNLSYL
Sbjct: 525 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKIPYELRKGHAPNLSYL 584

Query: 121 KVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQV 180
           KVWGCLAKVPFPALKKTTVGSKTFDCIFI YAQNSAAYRFMCLNDKTINESRDAEFFE V
Sbjct: 585 KVWGCLAKVPFPALKKTTVGSKTFDCIFIGYAQNSAAYRFMCLNDKTINESRDAEFFEHV 644

Query: 181 FPLKQSLYAPSLSNRMHDSEIVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLS 240
           FPLKQSLYAPSLSNRMHD EIVSETPGSET+DTPNLSCELELRRSKRQRTEKSFGPDFLS
Sbjct: 645 FPLKQSLYAPSLSNRMHDPEIVSETPGSETIDTPNLSCELELRRSKRQRTEKSFGPDFLS 704

Query: 241 TFIVEKRDEIDCNF 255
           TFIVE+RDEIDCNF
Sbjct: 705 TFIVERRDEIDCNF 718

[Close]

BLAST of Cmc03g0073731 vs. NCBI nr
Match: KAA0066784.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 493.8 bits (1270), Expect = 8.9e-136
Identity = 240/254 (94.49%), Postives = 244/254 (96.06%), Query Frame = 0


Query: 1   MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 60
           MF+KFKA+ ENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER
Sbjct: 571 MFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 630

Query: 61  KNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 120
           KNRTLKEMMNAML SS LSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL
Sbjct: 631 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 690

Query: 121 KVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQV 180
           KVWGCLAKVP PALKKTTVG KTFDCIFIEYAQNSAAYRFMCLNDKTINESRD EFFE V
Sbjct: 691 KVWGCLAKVPLPALKKTTVGPKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDVEFFEHV 750

Query: 181 FPLKQSLYAPSLSNRMHDSEIVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLS 240
           FPLKQSLYAPSLSNRMHD EIVSETP SETVDTPNLSCELE +RSKRQRTEKSFGPDFLS
Sbjct: 751 FPLKQSLYAPSLSNRMHDPEIVSETPVSETVDTPNLSCELEPKRSKRQRTEKSFGPDFLS 810

Query: 241 TFIVEKRDEIDCNF 255
           TFIVE+RDEIDCNF
Sbjct: 811 TFIVERRDEIDCNF 824

[Close]

BLAST of Cmc03g0073731 vs. NCBI nr
Match: ADN33807.1 (ty1-copia retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 493.8 bits (1270), Expect = 8.9e-136
Identity = 240/254 (94.49%), Postives = 244/254 (96.06%), Query Frame = 0


Query: 1   MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 60
           MF+KFKA+ ENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER
Sbjct: 571 MFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 630

Query: 61  KNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 120
           KNRTLKEMMNAML SS LSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL
Sbjct: 631 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 690

Query: 121 KVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQV 180
           KVWGCLAKVP PALKKTTVG KTFDCIFIEYAQNSAAYRFMCLNDKTINESRD EFFE V
Sbjct: 691 KVWGCLAKVPLPALKKTTVGPKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDVEFFEHV 750

Query: 181 FPLKQSLYAPSLSNRMHDSEIVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLS 240
           FPLKQSLYAPSLSNRMHD EIVSETP SETVDTPNLSCELE +RSKRQRTEKSFGPDFLS
Sbjct: 751 FPLKQSLYAPSLSNRMHDPEIVSETPVSETVDTPNLSCELEPKRSKRQRTEKSFGPDFLS 810

Query: 241 TFIVEKRDEIDCNF 255
           TFIVE+RDEIDCNF
Sbjct: 811 TFIVERRDEIDCNF 824

[Close]

BLAST of Cmc03g0073731 vs. NCBI nr
Match: KAA0043346.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 492.7 bits (1267), Expect = 2.0e-135
Identity = 241/254 (94.88%), Postives = 243/254 (95.67%), Query Frame = 0


Query: 1   MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 60
           MF+KFKA+ ENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER
Sbjct: 545 MFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 604

Query: 61  KNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 120
           KNRTLKEMMNAML SS LSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL
Sbjct: 605 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 664

Query: 121 KVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQV 180
           KVWGCLAKVP PALKKT VG KTFDCIFI YAQNSAAYRFMCLNDKTINESRDAEFFE V
Sbjct: 665 KVWGCLAKVPLPALKKTMVGPKTFDCIFIGYAQNSAAYRFMCLNDKTINESRDAEFFEHV 724

Query: 181 FPLKQSLYAPSLSNRMHDSEIVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLS 240
           FPLKQSLYAPSLSNRMHD EIVSETP SETVDTPNLSCELE RRSKRQRTEKSFGPDFLS
Sbjct: 725 FPLKQSLYAPSLSNRMHDPEIVSETPVSETVDTPNLSCELEPRRSKRQRTEKSFGPDFLS 784

Query: 241 TFIVEKRDEIDCNF 255
           TFIVEKRDEIDCNF
Sbjct: 785 TFIVEKRDEIDCNF 798

[Close]

BLAST of Cmc03g0073731 vs. NCBI nr
Match: KAA0056761.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 491.9 bits (1265), Expect = 3.4e-135
Identity = 240/254 (94.49%), Postives = 243/254 (95.67%), Query Frame = 0


Query: 1   MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 60
           MF+KFKA+ ENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER
Sbjct: 571 MFIKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 630

Query: 61  KNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 120
           KNRTLKEMMNAML SS LSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL
Sbjct: 631 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 690

Query: 121 KVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQV 180
           KVWGCLAKVP PALKKTTVG KTFDCIFI YAQNSAAYRFMCLNDKTINESRDAEFFE V
Sbjct: 691 KVWGCLAKVPLPALKKTTVGPKTFDCIFIGYAQNSAAYRFMCLNDKTINESRDAEFFEHV 750

Query: 181 FPLKQSLYAPSLSNRMHDSEIVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLS 240
           FPLKQSLYAPSLSNRMHD EIVSE P SETVDTPNLSCELE RRSKRQRTEKSFGPDFLS
Sbjct: 751 FPLKQSLYAPSLSNRMHDPEIVSEIPVSETVDTPNLSCELEPRRSKRQRTEKSFGPDFLS 810

Query: 241 TFIVEKRDEIDCNF 255
           TFIVE+RDEIDCNF
Sbjct: 811 TFIVERRDEIDCNF 824

[Close]

BLAST of Cmc03g0073731 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 9.2e-35
Identity = 75/179 (41.90%), Postives = 106/179 (59.22%), Query Frame = 0


Query: 1   MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 60
           +F KF A  E + G+++KRLRSD GGEY+ +  +E+C S+GI HE T P +PQ NG+AER
Sbjct: 528 VFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAER 587

Query: 61  KNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHKRLD-KTPYELWKGHAPNLSY 120
            NRT+ E + +ML  + L  + WGEAV +AC+++NR P   L  + P  +W     + S+
Sbjct: 588 MNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSH 647

Query: 121 LKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFE 179
           LKV+GC A    P  ++T +  K+  CIFI Y      YR      K +  SRD  F E
Sbjct: 648 LKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRE 706

[Close]

BLAST of Cmc03g0073731 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 119.8 bits (299), Expect = 4.6e-26
Identity = 82/253 (32.41%), Postives = 126/253 (49.80%), Query Frame = 0


Query: 1   MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 60
           MF  F AK E     ++  L  D G EY    +++FC   GI +  T P++PQ NG++ER
Sbjct: 528 MFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSER 587

Query: 61  KNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHKRL---DKTPYELWKGHAPNL 120
             RT+ E    M+S + L  + WGEAVL+A +++NRIP + L    KTPYE+W    P L
Sbjct: 588 MIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYL 647

Query: 121 SYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQN------SAAYRFMCLNDKTINES 180
            +L+V+G    V     K+     K+F  IF+ Y  N      +   +F+   D  ++E+
Sbjct: 648 KHLRVFGATVYVHIKN-KQGKFDDKSFKSIFVGYEPNGFKLWDAVNEKFIVARDVVVDET 707

Query: 181 R----DAEFFEQVFPLKQSLYAPSLSNRMHDSEIVSETPGSETVDTPNLSCE---LELRR 238
                 A  FE VF LK S  + +  N  +DS  + +T      + PN S E   ++  +
Sbjct: 708 NMVNSRAVKFETVF-LKDSKESEN-KNFPNDSRKIIQT------EFPNESKECDNIQFLK 767

[Close]

BLAST of Cmc03g0073731 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-21
Identity = 64/216 (29.63%), Postives = 107/216 (49.54%), Query Frame = 0


Query: 2   FLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERK 61
           F+ FK+  EN+   RI  L SD GGE+    L+++   +GI H  + P++P+ NG++ERK
Sbjct: 550 FIIFKSLVENRFQTRIGTLYSDNGGEF--VVLRDYLSQHGISHFTSPPHTPEHNGLSERK 609

Query: 62  NRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHKRLD-KTPYELWKGHAPNLSYL 121
           +R + EM   +LS + +    W  A   A +++NR+P   L  ++P++   G  PN   L
Sbjct: 610 HRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKL 669

Query: 122 KVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQV 181
           KV+GC          +  +  K+  C F+ Y+   +AY  + +    +  SR  +F E+ 
Sbjct: 670 KVFGCACYPWLRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDERC 729

Query: 182 FPLKQSLYAPSLSNRMHDSEIVSETPGSETVDTPNL 217
           FP   + +  S S     S+     P   T+ T  L
Sbjct: 730 FPFSTTNFGVSTSQEQR-SDSAPNWPSHTTLPTTPL 762

[Close]

BLAST of Cmc03g0073731 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.4e-19
Identity = 57/187 (30.48%), Postives = 93/187 (49.73%), Query Frame = 0


Query: 2   FLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERK 61
           F+ FK   EN+   RI    SD GGE+    L E+   +GI H  + P++P+ NG++ERK
Sbjct: 571 FITFKNLLENRFQTRIGTFYSDNGGEF--VALWEYFSQHGISHLTSPPHTPEHNGLSERK 630

Query: 62  NRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHKRLD-KTPYELWKGHAPNLSYL 121
           +R + E    +LS + +    W  A   A +++NR+P   L  ++P++   G +PN   L
Sbjct: 631 HRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKL 690

Query: 122 KVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQV 181
           +V+GC          +  +  K+  C+F+ Y+   +AY  + L    +  SR   F E  
Sbjct: 691 RVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDENC 750

Query: 182 FPLKQSL 188
           FP    L
Sbjct: 751 FPFSNYL 755

[Close]

BLAST of Cmc03g0073731 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.6e-09
Identity = 35/105 (33.33%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 1   MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 60
           +F    A  +NQ   R+  ++ DRG EY++KTL +F  + GI   +T     + +G+AER
Sbjct: 710 VFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAER 769

Query: 61  KNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHKRLDKT 106
            NRTL      +L  S L +++W  AV  +  I N +   + DK+
Sbjct: 770 LNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKNDKS 814

[Close]

BLAST of Cmc03g0073731 vs. ExPASy TrEMBL
Match: A0A5D3C7N0 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001400 PE=4 SV=1)

HSP 1 Score: 497.3 bits (1279), Expect = 3.9e-137
Identity = 243/254 (95.67%), Postives = 246/254 (96.85%), Query Frame = 0


Query: 1   MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 60
           MFLKFKA+ ENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER
Sbjct: 465 MFLKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 524

Query: 61  KNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 120
           KNRTLKEMMNAML SS LSDNMWGEAVLSACFILNRIPHKRLDK PYEL KGHAPNLSYL
Sbjct: 525 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKIPYELRKGHAPNLSYL 584

Query: 121 KVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQV 180
           KVWGCLAKVPFPALKKTTVGSKTFDCIFI YAQNSAAYRFMCLNDKTINESRDAEFFE V
Sbjct: 585 KVWGCLAKVPFPALKKTTVGSKTFDCIFIGYAQNSAAYRFMCLNDKTINESRDAEFFEHV 644

Query: 181 FPLKQSLYAPSLSNRMHDSEIVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLS 240
           FPLKQSLYAPSLSNRMHD EIVSETPGSET+DTPNLSCELELRRSKRQRTEKSFGPDFLS
Sbjct: 645 FPLKQSLYAPSLSNRMHDPEIVSETPGSETIDTPNLSCELELRRSKRQRTEKSFGPDFLS 704

Query: 241 TFIVEKRDEIDCNF 255
           TFIVE+RDEIDCNF
Sbjct: 705 TFIVERRDEIDCNF 718

[Close]

BLAST of Cmc03g0073731 vs. ExPASy TrEMBL
Match: A0A5A7VHG8 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G001260 PE=4 SV=1)

HSP 1 Score: 493.8 bits (1270), Expect = 4.3e-136
Identity = 240/254 (94.49%), Postives = 244/254 (96.06%), Query Frame = 0


Query: 1   MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 60
           MF+KFKA+ ENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER
Sbjct: 571 MFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 630

Query: 61  KNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 120
           KNRTLKEMMNAML SS LSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL
Sbjct: 631 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 690

Query: 121 KVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQV 180
           KVWGCLAKVP PALKKTTVG KTFDCIFIEYAQNSAAYRFMCLNDKTINESRD EFFE V
Sbjct: 691 KVWGCLAKVPLPALKKTTVGPKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDVEFFEHV 750

Query: 181 FPLKQSLYAPSLSNRMHDSEIVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLS 240
           FPLKQSLYAPSLSNRMHD EIVSETP SETVDTPNLSCELE +RSKRQRTEKSFGPDFLS
Sbjct: 751 FPLKQSLYAPSLSNRMHDPEIVSETPVSETVDTPNLSCELEPKRSKRQRTEKSFGPDFLS 810

Query: 241 TFIVEKRDEIDCNF 255
           TFIVE+RDEIDCNF
Sbjct: 811 TFIVERRDEIDCNF 824

[Close]

BLAST of Cmc03g0073731 vs. ExPASy TrEMBL
Match: E5GBG5 (Ty1-copia retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 493.8 bits (1270), Expect = 4.3e-136
Identity = 240/254 (94.49%), Postives = 244/254 (96.06%), Query Frame = 0


Query: 1   MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 60
           MF+KFKA+ ENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER
Sbjct: 571 MFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 630

Query: 61  KNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 120
           KNRTLKEMMNAML SS LSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL
Sbjct: 631 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 690

Query: 121 KVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQV 180
           KVWGCLAKVP PALKKTTVG KTFDCIFIEYAQNSAAYRFMCLNDKTINESRD EFFE V
Sbjct: 691 KVWGCLAKVPLPALKKTTVGPKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDVEFFEHV 750

Query: 181 FPLKQSLYAPSLSNRMHDSEIVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLS 240
           FPLKQSLYAPSLSNRMHD EIVSETP SETVDTPNLSCELE +RSKRQRTEKSFGPDFLS
Sbjct: 751 FPLKQSLYAPSLSNRMHDPEIVSETPVSETVDTPNLSCELEPKRSKRQRTEKSFGPDFLS 810

Query: 241 TFIVEKRDEIDCNF 255
           TFIVE+RDEIDCNF
Sbjct: 811 TFIVERRDEIDCNF 824

[Close]

BLAST of Cmc03g0073731 vs. ExPASy TrEMBL
Match: A0A5A7TMS2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002600 PE=4 SV=1)

HSP 1 Score: 492.7 bits (1267), Expect = 9.6e-136
Identity = 241/254 (94.88%), Postives = 243/254 (95.67%), Query Frame = 0


Query: 1   MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 60
           MF+KFKA+ ENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER
Sbjct: 545 MFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 604

Query: 61  KNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 120
           KNRTLKEMMNAML SS LSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL
Sbjct: 605 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 664

Query: 121 KVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQV 180
           KVWGCLAKVP PALKKT VG KTFDCIFI YAQNSAAYRFMCLNDKTINESRDAEFFE V
Sbjct: 665 KVWGCLAKVPLPALKKTMVGPKTFDCIFIGYAQNSAAYRFMCLNDKTINESRDAEFFEHV 724

Query: 181 FPLKQSLYAPSLSNRMHDSEIVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLS 240
           FPLKQSLYAPSLSNRMHD EIVSETP SETVDTPNLSCELE RRSKRQRTEKSFGPDFLS
Sbjct: 725 FPLKQSLYAPSLSNRMHDPEIVSETPVSETVDTPNLSCELEPRRSKRQRTEKSFGPDFLS 784

Query: 241 TFIVEKRDEIDCNF 255
           TFIVEKRDEIDCNF
Sbjct: 785 TFIVEKRDEIDCNF 798

[Close]

BLAST of Cmc03g0073731 vs. ExPASy TrEMBL
Match: A0A5D3DJE2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004120 PE=4 SV=1)

HSP 1 Score: 491.9 bits (1265), Expect = 1.6e-135
Identity = 240/254 (94.49%), Postives = 243/254 (95.67%), Query Frame = 0


Query: 1   MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 60
           MF+KFKA+ ENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER
Sbjct: 467 MFIKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 526

Query: 61  KNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 120
           KNRTLKEMMNAML SS LSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL
Sbjct: 527 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 586

Query: 121 KVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQV 180
           KVWGCLAKVP PALKKTTVG KTFDCIFI YAQNSAAYRFMCLNDKTINESRDAEFFE V
Sbjct: 587 KVWGCLAKVPLPALKKTTVGPKTFDCIFIGYAQNSAAYRFMCLNDKTINESRDAEFFEHV 646

Query: 181 FPLKQSLYAPSLSNRMHDSEIVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLS 240
           FPLKQSLYAPSLSNRMHD EIVSE P SETVDTPNLSCELE RRSKRQRTEKSFGPDFLS
Sbjct: 647 FPLKQSLYAPSLSNRMHDPEIVSEIPVSETVDTPNLSCELEPRRSKRQRTEKSFGPDFLS 706

Query: 241 TFIVEKRDEIDCNF 255
           TFIVE+RDEIDCNF
Sbjct: 707 TFIVERRDEIDCNF 720

The following BLAST results are available for this feature:

BLAST of Cmc03g0073731 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07244.1	8.0e-137	95.67	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0066784.1	8.9e-136	94.49	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
ADN33807.1	8.9e-136	94.49	ty1-copia retrotransposon protein [Cucumis melo subsp. melo]	[more]
KAA0043346.1	2.0e-135	94.88	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056761.1	3.4e-135	94.49	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0073731 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	9.2e-35	41.90	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	4.6e-26	32.41	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.5e-21	29.63	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.4e-19	30.48	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12491	6.6e-09	33.33	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc03g0073731 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C7N0	3.9e-137	95.67	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VHG8	4.3e-136	94.49	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
E5GBG5	4.3e-136	94.49	Ty1-copia retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=...	[more]
A0A5A7TMS2	9.6e-136	94.88	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DJE2	1.6e-135	94.49	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc03g0073731 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 2..123 e-value: 2.3E-34 score: 120.4
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 8..200
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..114 score: 19.400385
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0073731.1	Cmc03g0073731.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding