Cmc03g0071801 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0071801
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	CMiso1.1chr03: 18398270 .. 18398932 (-)
RNA-Seq Expression	Cmc03g0071801
Synteny	Cmc03g0071801

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGATCTTGGTAAGATAAAATTTTGCCTTAGCTTACAAATCGAGCATTTAGTCGACAGAATTTTTATTCATCAATCGACATATACAGAAAAGATTTTAAAAAGATTCTATATGGACAAAGCACACCCATTGAACATTCCAATGGTGGTTCAATCACTATATGTAAAAAAGGATGTCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCTTGAAGTATCGTACCTTAGTGCAATAGGTGTACTAATGTATCTTGCTAATAACACAAGACCAGATATAACATTTTCAGTAAATCTATTAGCAAGATATAGTTATTCTCCAACAAAAAGACATTGGAATGGAGTTAAGCATGTACTTCGTTATCTTCAAGGGACAATTGATATGAGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGGTTATGCGGATGCTGGATATTTATCTGACCCATACAAAGCAAGATCTCAAACAGGTTATCTGTTTACATATGGAGGAACTGCTATATCTTGGCGGTCTGTAAAGCAAACCATGACGGCCACTTCATCGAATCATACAGAAATTCTTGCAATTCATGAAGCTAGTAGAGAAATGTGTATGGTTGAGGTCAATGACTCATCATATTCGAGAAACATGTGGTTTGTCTTTCAGTAA

mRNA sequence

ATGAAAGATCTTGGTAAGATAAAATTTTGCCTTAGCTTACAAATCGAGCATTTAGTCGACAGAATTTTTATTCATCAATCGACATATACAGAAAAGATTTTAAAAAGATTCTATATGGACAAAGCACACCCATTGAACATTCCAATGGTGGTTCAATCACTATATGTAAAAAAGGATGTCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCTTGAAGTATCGTACCTTAGTGCAATAGGTGTACTAATGTATCTTGCTAATAACACAAGACCAGATATAACATTTTCAGTAAATCTATTAGCAAGATATAGTTATTCTCCAACAAAAAGACATTGGAATGGAGTTAAGCATGTACTTCGTTATCTTCAAGGGACAATTGATATGAGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGGTTATGCGGATGCTGGATATTTATCTGACCCATACAAAGCAAGATCTCAAACAGGTTATCTGTTTACATATGGAGGAACTGCTATATCTTGGCGGTCTGTAAAGCAAACCATGACGGCCACTTCATCGAATCATACAGAAATTCTTGCAATTCATGAAGCTAGTAGAGAAATGTGTATGGTTGAGGTCAATGACTCATCATATTCGAGAAACATGTGGTTTGTCTTTCAGTAA

Coding sequence (CDS)

ATGAAAGATCTTGGTAAGATAAAATTTTGCCTTAGCTTACAAATCGAGCATTTAGTCGACAGAATTTTTATTCATCAATCGACATATACAGAAAAGATTTTAAAAAGATTCTATATGGACAAAGCACACCCATTGAACATTCCAATGGTGGTTCAATCACTATATGTAAAAAAGGATGTCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCTTGAAGTATCGTACCTTAGTGCAATAGGTGTACTAATGTATCTTGCTAATAACACAAGACCAGATATAACATTTTCAGTAAATCTATTAGCAAGATATAGTTATTCTCCAACAAAAAGACATTGGAATGGAGTTAAGCATGTACTTCGTTATCTTCAAGGGACAATTGATATGAGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGGTTATGCGGATGCTGGATATTTATCTGACCCATACAAAGCAAGATCTCAAACAGGTTATCTGTTTACATATGGAGGAACTGCTATATCTTGGCGGTCTGTAAAGCAAACCATGACGGCCACTTCATCGAATCATACAGAAATTCTTGCAATTCATGAAGCTAGTAGAGAAATGTGTATGGTTGAGGTCAATGACTCATCATATTCGAGAAACATGTGGTTTGTCTTTCAGTAA

Protein sequence

MKDLGKIKFCLSLQIEHLVDRIFIHQSTYTEKILKRFYMDKAHPLNIPMVVQSLYVKKDVFRPREDNEELLGLEVSYLSAIGVLMYLANNTRPDITFSVNLLARYSYSPTKRHWNGVKHVLRYLQGTIDMSLFYSNKSNFDLVGYADAGYLSDPYKARSQTGYLFTYGGTAISWRSVKQTMTATSSNHTEILAIHEASREMCMVEVNDSSYSRNMWFVFQ

Homology

[Close]

BLAST of Cmc03g0071801 vs. NCBI nr
Match: AQY61300.1 (Pol [Coffea eugenioides])

HSP 1 Score: 322.0 bits (824), Expect = 4.0e-84
Identity = 155/200 (77.50%), Postives = 175/200 (87.50%), Query Frame = 0


Query: 1    MKDLGKIKFCLSLQIEHLVDRIFIHQSTYTEKILKRFYMDKAHPLNIPMVVQSLYVKKDV 60
            +KD GK KFCL LQIEHL   IF+HQ+ YT K+LKRFYMDKAH L+ PMVV+SL   KD 
Sbjct: 853  IKDFGKTKFCLGLQIEHLKGGIFVHQTAYTLKVLKRFYMDKAHTLSTPMVVRSLDPNKDP 912

Query: 61   FRPREDNEELLGLEVSYLSAIGVLMYLANNTRPDITFSVNLLARYSYSPTKRHWNGVKHV 120
            FRPRE+NEE+LG EV YLSAIGVLMYLAN TRPDI+F+VNLLAR+S SPT+RHWNG+KH+
Sbjct: 913  FRPREENEEILGPEVPYLSAIGVLMYLANCTRPDISFAVNLLARFSSSPTRRHWNGIKHI 972

Query: 121  LRYLQGTIDMSLFYSNKSNFDLVGYADAGYLSDPYKARSQTGYLFTYGGTAISWRSVKQT 180
             RYLQGTID+ LFYSNKS  +LVGYADAGYLSDP+KARSQTGYLFTYGGTAISWRS KQ+
Sbjct: 973  FRYLQGTIDLGLFYSNKSKPELVGYADAGYLSDPHKARSQTGYLFTYGGTAISWRSTKQS 1032

Query: 181  MTATSSNHTEILAIHEASRE 201
            + ATSSNH EI+AIHEASRE
Sbjct: 1033 LAATSSNHAEIIAIHEASRE 1052

[Close]

BLAST of Cmc03g0071801 vs. NCBI nr
Match: AQY61295.1 (Pol [Coffea arabica])

HSP 1 Score: 321.6 bits (823), Expect = 5.2e-84
Identity = 154/200 (77.00%), Postives = 174/200 (87.00%), Query Frame = 0


Query: 1    MKDLGKIKFCLSLQIEHLVDRIFIHQSTYTEKILKRFYMDKAHPLNIPMVVQSLYVKKDV 60
            +KD GK KFCL LQIEHL   IF+HQ+ YT K+LKRFYMDKAH L+ PMVV+SL   KD 
Sbjct: 853  IKDFGKTKFCLGLQIEHLKGGIFVHQTAYTRKVLKRFYMDKAHTLSTPMVVRSLDPNKDP 912

Query: 61   FRPREDNEELLGLEVSYLSAIGVLMYLANNTRPDITFSVNLLARYSYSPTKRHWNGVKHV 120
            FRPRE+NEE+LG EV YLSAIG LMYLAN TRPDI+F+VNLLAR+S SPT+RHWNG+KH+
Sbjct: 913  FRPREENEEILGPEVPYLSAIGALMYLANCTRPDISFAVNLLARFSSSPTRRHWNGIKHI 972

Query: 121  LRYLQGTIDMSLFYSNKSNFDLVGYADAGYLSDPYKARSQTGYLFTYGGTAISWRSVKQT 180
             RYLQGTID+ LFYSNKS  +LVGYADAGYLSDP+KARSQTGYLFTYGGTAISWRS KQ+
Sbjct: 973  FRYLQGTIDLGLFYSNKSKPELVGYADAGYLSDPHKARSQTGYLFTYGGTAISWRSTKQS 1032

Query: 181  MTATSSNHTEILAIHEASRE 201
            + ATSSNH EI+AIHEASRE
Sbjct: 1033 LAATSSNHAEIIAIHEASRE 1052

[Close]

BLAST of Cmc03g0071801 vs. NCBI nr
Match: AQY61299.1 (Pol [Coffea canephora])

HSP 1 Score: 318.9 bits (816), Expect = 3.4e-83
Identity = 152/200 (76.00%), Postives = 173/200 (86.50%), Query Frame = 0


Query: 1    MKDLGKIKFCLSLQIEHLVDRIFIHQSTYTEKILKRFYMDKAHPLNIPMVVQSLYVKKDV 60
            +KD GK KFCL LQIEHL   IF+HQ+ YT K+LKRFYMDKAH L+ PMVV+SL   KD 
Sbjct: 853  IKDFGKTKFCLGLQIEHLKSGIFVHQTAYTRKVLKRFYMDKAHTLSTPMVVRSLDPNKDP 912

Query: 61   FRPREDNEELLGLEVSYLSAIGVLMYLANNTRPDITFSVNLLARYSYSPTKRHWNGVKHV 120
            FRPRE+N+E+LG EV YLSAIG LMYLAN TRPDI+F+VNLLAR+S SPT+RHWNG+KH+
Sbjct: 913  FRPREENKEILGPEVPYLSAIGALMYLANCTRPDISFAVNLLARFSSSPTRRHWNGIKHI 972

Query: 121  LRYLQGTIDMSLFYSNKSNFDLVGYADAGYLSDPYKARSQTGYLFTYGGTAISWRSVKQT 180
             RYLQGTID+ LFYSNKS  +LVGYAD GYLSDP+KARSQTGYLFTYGGTAISWRS KQ+
Sbjct: 973  FRYLQGTIDLGLFYSNKSKPELVGYADTGYLSDPHKARSQTGYLFTYGGTAISWRSTKQS 1032

Query: 181  MTATSSNHTEILAIHEASRE 201
            + ATSSNH EI+AIHEASRE
Sbjct: 1033 LAATSSNHAEIIAIHEASRE 1052

[Close]

BLAST of Cmc03g0071801 vs. NCBI nr
Match: RVW51051.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 318.5 bits (815), Expect = 4.4e-83
Identity = 155/200 (77.50%), Postives = 172/200 (86.00%), Query Frame = 0


Query: 1   MKDLGKIKFCLSLQIEHLVDRIFIHQSTYTEKILKRFYMDKAHPLNIPMVVQSLYVKKDV 60
           MKDLGK KFCL LQIEH  + + +HQSTY +K+LKRFYMDKAHPL+ PMVV+SL VKKD 
Sbjct: 779 MKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYMDKAHPLSSPMVVRSLDVKKDP 838

Query: 61  FRPREDNEELLGLEVSYLSAIGVLMYLANNTRPDITFSVNLLARYSYSPTKRHWNGVKHV 120
           FRP E +EELLG EV YLSAIG LMYLAN TRPDI FSVNLLARYS SPT+RHWNG+KH+
Sbjct: 839 FRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSSPTRRHWNGIKHI 898

Query: 121 LRYLQGTIDMSLFYSNKSNFDLVGYADAGYLSDPYKARSQTGYLFTYGGTAISWRSVKQT 180
           LRYL+GT DM LFYS +S   L+GYADAGYLSDP+K RSQTGY+F Y GTAISWRSVKQT
Sbjct: 899 LRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRSQTGYVFNYNGTAISWRSVKQT 958

Query: 181 MTATSSNHTEILAIHEASRE 201
           M ATSSNH+EILAIHEASRE
Sbjct: 959 MVATSSNHSEILAIHEASRE 978

[Close]

BLAST of Cmc03g0071801 vs. NCBI nr
Match: AQY61297.1 (Pol [Coffea canephora])

HSP 1 Score: 318.2 bits (814), Expect = 5.7e-83
Identity = 152/200 (76.00%), Postives = 173/200 (86.50%), Query Frame = 0


Query: 1   MKDLGKIKFCLSLQIEHLVDRIFIHQSTYTEKILKRFYMDKAHPLNIPMVVQSLYVKKDV 60
           +KD GK KFCL LQIEHL   IF+HQ+ YT K+LKRFYMDKAH L+ PMVV+SL   KD 
Sbjct: 738 IKDFGKTKFCLGLQIEHLKGGIFVHQTAYTRKVLKRFYMDKAHTLSTPMVVRSLDPNKDP 797

Query: 61  FRPREDNEELLGLEVSYLSAIGVLMYLANNTRPDITFSVNLLARYSYSPTKRHWNGVKHV 120
           FRPRE+NEE+LG EV YLSAIG LMYLAN TRPDI+F+VNLLAR+S SPT+RHWNG+KH+
Sbjct: 798 FRPREENEEILGPEVPYLSAIGALMYLANCTRPDISFAVNLLARFSSSPTRRHWNGIKHI 857

Query: 121 LRYLQGTIDMSLFYSNKSNFDLVGYADAGYLSDPYKARSQTGYLFTYGGTAISWRSVKQT 180
            RYLQGTID+ LFYSNKS  +LVGY DAGYLS+P+KARSQTGYLFTYGGTAISWRS KQ+
Sbjct: 858 FRYLQGTIDLGLFYSNKSKPELVGYTDAGYLSNPHKARSQTGYLFTYGGTAISWRSTKQS 917

Query: 181 MTATSSNHTEILAIHEASRE 201
           + ATSSNH EI+AIHEASRE
Sbjct: 918 LAATSSNHAEIIAIHEASRE 937

[Close]

BLAST of Cmc03g0071801 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 126.7 bits (317), Expect = 3.2e-28
Identity = 75/207 (36.23%), Postives = 110/207 (53.14%), Query Frame = 0


Query: 1    MKDLGKIKFCLSLQIEHLVDRIFIHQSTYTEKILKRFYMDKAHPLNIPMVVQSLYVKKDV 60
            M DL +IK  + ++IE   D+I++ QS Y +KIL +F M+  + ++ P+           
Sbjct: 1114 MTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPL----------- 1173

Query: 61   FRPREDNEELLGLE----VSYLSAIGVLMYLANNTRPDITFSVNLLARYSYSPTKRHWNG 120
              P + N ELL  +        S IG LMY+   TRPD+T +VN+L+RYS       W  
Sbjct: 1174 --PSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQN 1233

Query: 121  VKHVLRYLQGTIDMSLFYSNKSNFD--LVGYADAGYLSDPYKARSQTGYLF-TYGGTAIS 180
            +K VLRYL+GTIDM L +     F+  ++GY D+ +       +S TGYLF  +    I 
Sbjct: 1234 LKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLIC 1293

Query: 181  WRSVKQTMTATSSNHTEILAIHEASRE 201
            W + +Q   A SS   E +A+ EA RE
Sbjct: 1294 WNTKRQNSVAASSTEAEYMALFEAVRE 1307

[Close]

BLAST of Cmc03g0071801 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.2e-28
Identity = 78/203 (38.42%), Postives = 110/203 (54.19%), Query Frame = 0


Query: 1    MKDLGKIKFCLSLQI--EHLVDRIFIHQSTYTEKILKRFYMDKAHPLNIPMVVQSLYVKK 60
            MKDLG  +  L ++I  E    ++++ Q  Y E++L+RF M  A P++ P+       KK
Sbjct: 1035 MKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKK 1094

Query: 61   DVFRPREDNEELLGLEVSYLSAIGVLMYLANNTRPDITFSVNLLARYSYSPTKRHWNGVK 120
                P    E+    +V Y SA+G LMY    TRPDI  +V +++R+  +P K HW  VK
Sbjct: 1095 --MCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVK 1154

Query: 121  HVLRYLQGTIDMSLFYSNKSNFDLVGYADAGYLSDPYKARSQTGYLFTYGGTAISWRSVK 180
             +LRYL+GT    L +   S+  L GY DA    D    +S TGYLFT+ G AISW+S  
Sbjct: 1155 WILRYLRGTTGDCLCFGG-SDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKL 1214

Query: 181  QTMTATSSNHTEILAIHEASREM 202
            Q   A S+   E +A  E  +EM
Sbjct: 1215 QKCVALSTTEAEYIAATETGKEM 1234

[Close]

BLAST of Cmc03g0071801 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.4e-23
Identity = 56/132 (42.42%), Postives = 77/132 (58.33%), Query Frame = 0


Query: 75  VSYLSAIGVLMYLANNTRPDITFSVNLLARYSYSPTKRHWNGVKHVLRYLQGTIDMSLFY 134
           V YLSA+G +MYL   TRPD+  +V +L++++  P   HW  +K VLRYLQ T    L +
Sbjct: 4   VPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEF 63

Query: 135 SNKSNFDLVGYADAGYLSDPYKARSQTGYLFTYGGTAISWRSVKQTMTATSSNHTEILAI 194
           +      LVGY+DA +  D    RS +GYLF   G  +SWRS KQ   A SS   E +A+
Sbjct: 64  TRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMAL 123

Query: 195 HEASREMCMVEV 207
            EA++E   + V
Sbjct: 124 SEATQEAVWLTV 135

[Close]

BLAST of Cmc03g0071801 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.4e-20
Identity = 62/201 (30.85%), Postives = 93/201 (46.27%), Query Frame = 0


Query: 1    MKDLGKIKFCLSLQIEHLVDRIFIHQSTYTEKILKRFYMDKAHPLNIPMVVQSLYVKKDV 60
            +K+   + + L ++ + +   + + Q  YT  +L R  M  A P+  PM           
Sbjct: 1160 VKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSG 1219

Query: 61   FRPREDNEELLGLEVSYLSAIGVLMYLANNTRPDITFSVNLLARYSYSPTKRHWNGVKHV 120
             +  +  E        Y   +G L YLA  TRPD++++VN L++Y + PT  HWN +K V
Sbjct: 1220 TKLPDPTE--------YRGIVGSLQYLA-FTRPDLSYAVNRLSQYMHMPTDDHWNALKRV 1279

Query: 121  LRYLQGTIDMSLFYSNKSNFDLVGYADAGYLSDPYKARSQTGYLFTYGGTAISWRSVKQT 180
            LRYL GT D  +F    +   L  Y+DA +  D     S  GY+   G   ISW S KQ 
Sbjct: 1280 LRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQK 1339

Query: 181  MTATSSNHTEILAIHEASREM 202
                SS   E  ++   S E+
Sbjct: 1340 GVVRSSTEAEYRSVANTSSEL 1351

[Close]

BLAST of Cmc03g0071801 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.3e-18
Identity = 63/204 (30.88%), Postives = 95/204 (46.57%), Query Frame = 0


Query: 1    MKDLGKIKFCLSLQIEHLVDRIFIHQSTYTEKILKRFYMDKAHPLNIPMVVQ---SLYVK 60
            +KD  ++ + L ++ + +   + + Q  Y   +L R  M  A P+  PM      SLY  
Sbjct: 1177 VKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSG 1236

Query: 61   KDVFRPREDNEELLGLEVSYLSAIGVLMYLANNTRPDITFSVNLLARYSYSPTKRHWNGV 120
              +  P E           Y   +G L YLA  TRPDI+++VN L+++ + PT+ H   +
Sbjct: 1237 TKLTDPTE-----------YRGIVGSLQYLA-FTRPDISYAVNRLSQFMHMPTEEHLQAL 1296

Query: 121  KHVLRYLQGTIDMSLFYSNKSNFDLVGYADAGYLSDPYKARSQTGYLFTYGGTAISWRSV 180
            K +LRYL GT +  +F    +   L  Y+DA +  D     S  GY+   G   ISW S 
Sbjct: 1297 KRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSK 1356

Query: 181  KQTMTATSSNHTEILAIHEASREM 202
            KQ     SS   E  ++   S EM
Sbjct: 1357 KQKGVVRSSTEAEYRSVANTSSEM 1368

[Close]

BLAST of Cmc03g0071801 vs. ExPASy TrEMBL
Match: A0A2N9FE48 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13021 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.5e-84
Identity = 161/200 (80.50%), Postives = 173/200 (86.50%), Query Frame = 0


Query: 1   MKDLGKIKFCLSLQIEHLVDRIFIHQSTYTEKILKRFYMDKAHPLNIPMVVQSLYVKKDV 60
           MKDLGK KFCL LQIEHL D I IHQSTYTEK+LK F+MDKAHPL+ PMVV+SL VKKD 
Sbjct: 65  MKDLGKTKFCLGLQIEHLPDGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDVKKDP 124

Query: 61  FRPREDNEELLGLEVSYLSAIGVLMYLANNTRPDITFSVNLLARYSYSPTKRHWNGVKHV 120
           FRP+E  EE LG EV YLSAIG LMYLAN TRPDI FSVNLLARYS +PT RHWNGVKHV
Sbjct: 125 FRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVKHV 184

Query: 121 LRYLQGTIDMSLFYSNKSNFDLVGYADAGYLSDPYKARSQTGYLFTYGGTAISWRSVKQT 180
           LRYL+GT DM LFY NKSN  LVGYADAGYLSDP+K RSQTGYLFT G TAISWRSVKQT
Sbjct: 185 LRYLRGTTDMGLFYPNKSNPQLVGYADAGYLSDPHKGRSQTGYLFTCGNTAISWRSVKQT 244

Query: 181 MTATSSNHTEILAIHEASRE 201
           ++ATSSNH+EI+AIHEASRE
Sbjct: 245 ISATSSNHSEIIAIHEASRE 264

[Close]

BLAST of Cmc03g0071801 vs. ExPASy TrEMBL
Match: A0A1U9WYB0 (Pol OS=Coffea eugenioides OX=49369 GN=Pol PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.9e-84
Identity = 155/200 (77.50%), Postives = 175/200 (87.50%), Query Frame = 0


Query: 1    MKDLGKIKFCLSLQIEHLVDRIFIHQSTYTEKILKRFYMDKAHPLNIPMVVQSLYVKKDV 60
            +KD GK KFCL LQIEHL   IF+HQ+ YT K+LKRFYMDKAH L+ PMVV+SL   KD 
Sbjct: 853  IKDFGKTKFCLGLQIEHLKGGIFVHQTAYTLKVLKRFYMDKAHTLSTPMVVRSLDPNKDP 912

Query: 61   FRPREDNEELLGLEVSYLSAIGVLMYLANNTRPDITFSVNLLARYSYSPTKRHWNGVKHV 120
            FRPRE+NEE+LG EV YLSAIGVLMYLAN TRPDI+F+VNLLAR+S SPT+RHWNG+KH+
Sbjct: 913  FRPREENEEILGPEVPYLSAIGVLMYLANCTRPDISFAVNLLARFSSSPTRRHWNGIKHI 972

Query: 121  LRYLQGTIDMSLFYSNKSNFDLVGYADAGYLSDPYKARSQTGYLFTYGGTAISWRSVKQT 180
             RYLQGTID+ LFYSNKS  +LVGYADAGYLSDP+KARSQTGYLFTYGGTAISWRS KQ+
Sbjct: 973  FRYLQGTIDLGLFYSNKSKPELVGYADAGYLSDPHKARSQTGYLFTYGGTAISWRSTKQS 1032

Query: 181  MTATSSNHTEILAIHEASRE 201
            + ATSSNH EI+AIHEASRE
Sbjct: 1033 LAATSSNHAEIIAIHEASRE 1052

[Close]

BLAST of Cmc03g0071801 vs. ExPASy TrEMBL
Match: A0A2N9G6F8 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22947 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.9e-84
Identity = 160/200 (80.00%), Postives = 173/200 (86.50%), Query Frame = 0


Query: 1   MKDLGKIKFCLSLQIEHLVDRIFIHQSTYTEKILKRFYMDKAHPLNIPMVVQSLYVKKDV 60
           MKDLGK KFCL LQIEHL D I IHQSTYTEK+LK F+MDKAHPL+ PMVV+SL VKKD 
Sbjct: 456 MKDLGKTKFCLGLQIEHLPDGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDVKKDP 515

Query: 61  FRPREDNEELLGLEVSYLSAIGVLMYLANNTRPDITFSVNLLARYSYSPTKRHWNGVKHV 120
           FRP+E  EE LG EV YLSAIG LMYLAN TRPDI FSVNLLARYS +PT RHWNGVKHV
Sbjct: 516 FRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVKHV 575

Query: 121 LRYLQGTIDMSLFYSNKSNFDLVGYADAGYLSDPYKARSQTGYLFTYGGTAISWRSVKQT 180
           LRYL+GT DM LFY NKSN  L+GYADAGYLSDP+K RSQTGYLFT G TAISWRSVKQT
Sbjct: 576 LRYLRGTTDMGLFYPNKSNPQLIGYADAGYLSDPHKGRSQTGYLFTCGNTAISWRSVKQT 635

Query: 181 MTATSSNHTEILAIHEASRE 201
           ++ATSSNH+EI+AIHEASRE
Sbjct: 636 ISATSSNHSEIIAIHEASRE 655

[Close]

BLAST of Cmc03g0071801 vs. ExPASy TrEMBL
Match: A0A2N9IT14 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55560 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.9e-84
Identity = 161/200 (80.50%), Postives = 173/200 (86.50%), Query Frame = 0


Query: 1    MKDLGKIKFCLSLQIEHLVDRIFIHQSTYTEKILKRFYMDKAHPLNIPMVVQSLYVKKDV 60
            MKDLGK KFCL LQIEHL D I IHQSTYTEK+LK F+MDKAHPL+ PMVV+SL VKKD 
Sbjct: 966  MKDLGKTKFCLGLQIEHLPDGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDVKKDP 1025

Query: 61   FRPREDNEELLGLEVSYLSAIGVLMYLANNTRPDITFSVNLLARYSYSPTKRHWNGVKHV 120
            FRP+E  EE LG EV YLSAIG LMYLAN TRPDI FSVNLLARYS +PT RHWNGVKHV
Sbjct: 1026 FRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVKHV 1085

Query: 121  LRYLQGTIDMSLFYSNKSNFDLVGYADAGYLSDPYKARSQTGYLFTYGGTAISWRSVKQT 180
            LRYL+GT DM LFY NKSN  LVGYADAGYLSDP+K RSQTGYLFT G TAISWRSVKQT
Sbjct: 1086 LRYLRGTTDMGLFYPNKSNPQLVGYADAGYLSDPHKGRSQTGYLFTCGDTAISWRSVKQT 1145

Query: 181  MTATSSNHTEILAIHEASRE 201
            ++ATSSNH+EI+AIHEASRE
Sbjct: 1146 ISATSSNHSEIIAIHEASRE 1165

[Close]

BLAST of Cmc03g0071801 vs. ExPASy TrEMBL
Match: A0A1U9WYE0 (Pol OS=Coffea arabica OX=13443 GN=Pol PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.5e-84
Identity = 154/200 (77.00%), Postives = 174/200 (87.00%), Query Frame = 0


Query: 1    MKDLGKIKFCLSLQIEHLVDRIFIHQSTYTEKILKRFYMDKAHPLNIPMVVQSLYVKKDV 60
            +KD GK KFCL LQIEHL   IF+HQ+ YT K+LKRFYMDKAH L+ PMVV+SL   KD 
Sbjct: 853  IKDFGKTKFCLGLQIEHLKGGIFVHQTAYTRKVLKRFYMDKAHTLSTPMVVRSLDPNKDP 912

Query: 61   FRPREDNEELLGLEVSYLSAIGVLMYLANNTRPDITFSVNLLARYSYSPTKRHWNGVKHV 120
            FRPRE+NEE+LG EV YLSAIG LMYLAN TRPDI+F+VNLLAR+S SPT+RHWNG+KH+
Sbjct: 913  FRPREENEEILGPEVPYLSAIGALMYLANCTRPDISFAVNLLARFSSSPTRRHWNGIKHI 972

Query: 121  LRYLQGTIDMSLFYSNKSNFDLVGYADAGYLSDPYKARSQTGYLFTYGGTAISWRSVKQT 180
             RYLQGTID+ LFYSNKS  +LVGYADAGYLSDP+KARSQTGYLFTYGGTAISWRS KQ+
Sbjct: 973  FRYLQGTIDLGLFYSNKSKPELVGYADAGYLSDPHKARSQTGYLFTYGGTAISWRSTKQS 1032

Query: 181  MTATSSNHTEILAIHEASRE 201
            + ATSSNH EI+AIHEASRE
Sbjct: 1033 LAATSSNHAEIIAIHEASRE 1052

[Close]

BLAST of Cmc03g0071801 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 95.9 bits (237), Expect = 4.3e-20
Identity = 67/204 (32.84%), Postives = 101/204 (49.51%), Query Frame = 0


Query: 1   MKDLGKIKFCLSLQIEHLVDRIFIHQSTYTEKILKRFYMDKAHPLNIPM---VVQSLYVK 60
           ++DLG +K+ L L+I      I I Q  Y   +L    +    P ++PM   V  S +  
Sbjct: 310 LRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSG 369

Query: 61  KDVFRPREDNEELLGLEVSYLSAIGVLMYLANNTRPDITFSVNLLARYSYSPTKRHWNGV 120
            D    +           +Y   IG LMYL   TR DI+F+VN L+++S +P   H   V
Sbjct: 370 GDFVDAK-----------AYRRLIGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAV 429

Query: 121 KHVLRYLQGTIDMSLFYSNKSNFDLVGYADAGYLSDPYKARSQTGYLFTYGGTAISWRSV 180
             +L Y++GT+   LFYS+++   L  ++DA + S     RS  GY    G + ISW+S 
Sbjct: 430 MKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSK 489

Query: 181 KQTMTATSSNHTEILAIHEASREM 202
           KQ + + SS   E  A+  A+ EM
Sbjct: 490 KQQVVSKSSAEAEYRALSFATDEM 501

[Close]

BLAST of Cmc03g0071801 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 92.4 bits (228), Expect = 4.8e-19
Identity = 59/201 (29.35%), Postives = 100/201 (49.75%), Query Frame = 0


Query: 1   MKDLGKIKFCLSLQIEHLVDRIFIHQSTYTEKILKRFYMDKAHPLNIPMVVQSLYVKKDV 60
           MKDLG + + L +QI+     +F+ Q+ Y E+IL    M    P++ P+    L +   V
Sbjct: 33  MKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPL---PLKLNSSV 92

Query: 61  FRPREDNEELLGLEVSYLSAIGVLMYLANNTRPDITFSVNLLARYSYSPTKRHWNGVKHV 120
              +  +         + S +G L YL   TRPDI+++VN++ +  + PT   ++ +K V
Sbjct: 93  STAKYPDPS------DFRSIVGALQYL-TLTRPDISYAVNIVCQRMHEPTLADFDLLKRV 152

Query: 121 LRYLQGTIDMSLFYSNKSNFDLVGYADAGYLSDPYKARSQTGYLFTYGGTAISWRSVKQT 180
           LRY++GTI   L+    S  ++  + D+ +       RS TG+    G   ISW + +Q 
Sbjct: 153 LRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQP 212

Query: 181 MTATSSNHTEILAIHEASREM 202
             + SS  TE  A+   + E+
Sbjct: 213 TVSRSSTETEYRALALTAAEL 223

[Close]

BLAST of Cmc03g0071801 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 62.0 bits (149), Expect = 6.9e-10
Identity = 33/79 (41.77%), Postives = 47/79 (59.49%), Query Frame = 0


Query: 85  MYLANNTRPDITFSVNLLARYSYSPTKRHWNGVKHVLRYLQGTIDMSLFYSNKSNFDLVG 144
           MYL   TRPD+TF+VN L+++S +        V  VL Y++GT+   LFYS  S+  L  
Sbjct: 1   MYL-TITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 60

Query: 145 YADAGYLSDPYKARSQTGY 164
           +AD+ + S P   RS TG+
Sbjct: 61  FADSDWASCPDTRRSVTGF 78

The following BLAST results are available for this feature:

BLAST of Cmc03g0071801 vs. NCBI nr


Match Name	E-value	Identity	Description
AQY61300.1	4.0e-84	77.50	Pol [Coffea eugenioides]	[more]
AQY61295.1	5.2e-84	77.00	Pol [Coffea arabica]	[more]
AQY61299.1	3.4e-83	76.00	Pol [Coffea canephora]	[more]
RVW51051.1	4.4e-83	77.50	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
AQY61297.1	5.7e-83	76.00	Pol [Coffea canephora]	[more]

BLAST of Cmc03g0071801 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04146	3.2e-28	36.23	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	3.2e-28	38.42	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	2.4e-23	42.42	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
Q9ZT94	9.4e-20	30.85	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	2.3e-18	30.88	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc03g0071801 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9FE48	1.5e-84	80.50	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A1U9WYB0	1.9e-84	77.50	Pol OS=Coffea eugenioides OX=49369 GN=Pol PE=4 SV=1	[more]
A0A2N9G6F8	1.9e-84	80.00	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9IT14	1.9e-84	80.50	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55560 PE=4 SV=1	[more]
A0A1U9WYE0	2.5e-84	77.00	Pol OS=Coffea arabica OX=13443 GN=Pol PE=4 SV=1	[more]

BLAST of Cmc03g0071801 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	4.3e-20	32.84	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	4.8e-19	29.35	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	6.9e-10	41.77	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 57..167
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 57..167
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 143..201 e-value: 4.62563E-20 score: 80.5901

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0071801.1	Cmc03g0071801.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding