Cmc03g0070181 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0070181
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty1-copia retrotransposon protein
Location	CMiso1.1chr03: 15901744 .. 15902685 (-)
RNA-Seq Expression	Cmc03g0070181
Synteny	Cmc03g0070181

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAATCTTTGGAATAAACATGGAGTTAATAACTGATACTAAGTTTTTCCTCTCGTCACACTTTGAAATGAAAGACCTGGGAGAAGCAGACGTAATCCTAGGTGTTAAAATCAGGAAAAACAAAACTAGTTTGTCTCTATGTCAATCTCTTTACGTAGAGAAAATACTAAAGAAGTTTGATTCCTTTGATGTTTCTCCTGTGAGAACTCCCTTTGACGCTAGTAAACATCTTAAGAAGAATAAAGGATATAGTGTGTCTCAACCTGAATATGCAAAGATCATAGGTAGTGTGATGTATTTAATGAATTACACTAGACCAGATATTGCATATGCTGTCAGTAGATTAAGTAGATATACACACAATCCTAATAGATACCACTGGGATGCCTTACGCCATCTATTGAGATATCTTAAAGGGACAATAGATTATTGTCTACACTTCAACAAATTTTCTGCCGTACTAGAAGGATATTGTGATGTAAACTGGGTCACAGATAATGATGAGGTTAACTCTACTAGTGGGTATGTATTTTTACTCGGAGGTGGAGCAATATCTTGGAAGTCCACAAAAAAGACTTGTATAGCCAGATCCACGATGGAATCCGAGTTTATAACACTAGAGTTGGCAAGACAAGAGGCTGAGTGGATCAAAAATCTACTAGGAGATGTACCATTGTGGGGGACATCTGTACCTGTGTCCATACAGTGTGATTCGCAAGTTGCGATATGTACTGCCAAGAACAGTGTTTATAATGGTAAGAGTAGACACATACGTCTTAGGCATGCAGTAGTAAAACAACTGCTAAAGGAAGGAACCATCTCCTTGGAATTTGTTCGATCTGAGAAGAACTTGACTGATCCTTTAACCAAAGGATTAACAAGGAAAATGGTATTAGATTCCTCTATGAACATGGGCCTGAAGCCCTTCGGAGATCCATAG

mRNA sequence

ATGTTAATCTTTGGAATAAACATGGAGTTAATAACTGATACTAAGTTTTTCCTCTCGTCACACTTTGAAATGAAAGACCTGGGAGAAGCAGACGTAATCCTAGGTGTTAAAATCAGGAAAAACAAAACTAGTTTGTCTCTATGTCAATCTCTTTACGTAGAGAAAATACTAAAGAAGTTTGATTCCTTTGATGTTTCTCCTGTGAGAACTCCCTTTGACGCTAGTAAACATCTTAAGAAGAATAAAGGATATAGTGTGTCTCAACCTGAATATGCAAAGATCATAGGTAGTGTGATGTATTTAATGAATTACACTAGACCAGATATTGCATATGCTGTCAGTAGATTAAGTAGATATACACACAATCCTAATAGATACCACTGGGATGCCTTACGCCATCTATTGAGATATCTTAAAGGGACAATAGATTATTGTCTACACTTCAACAAATTTTCTGCCGTACTAGAAGGATATTGTGATGTAAACTGGGTCACAGATAATGATGAGGTTAACTCTACTAGTGGGTATGTATTTTTACTCGGAGGTGGAGCAATATCTTGGAAGTCCACAAAAAAGACTTGTATAGCCAGATCCACGATGGAATCCGAGTTTATAACACTAGAGTTGGCAAGACAAGAGGCTGAGTGGATCAAAAATCTACTAGGAGATGTACCATTGTGGGGGACATCTGTACCTGTGTCCATACAGTGTGATTCGCAAGTTGCGATATGTACTGCCAAGAACAGTGTTTATAATGGTAAGAGTAGACACATACGTCTTAGGCATGCAGTAGTAAAACAACTGCTAAAGGAAGGAACCATCTCCTTGGAATTTGTTCGATCTGAGAAGAACTTGACTGATCCTTTAACCAAAGGATTAACAAGGAAAATGGTATTAGATTCCTCTATGAACATGGGCCTGAAGCCCTTCGGAGATCCATAG

Coding sequence (CDS)

ATGTTAATCTTTGGAATAAACATGGAGTTAATAACTGATACTAAGTTTTTCCTCTCGTCACACTTTGAAATGAAAGACCTGGGAGAAGCAGACGTAATCCTAGGTGTTAAAATCAGGAAAAACAAAACTAGTTTGTCTCTATGTCAATCTCTTTACGTAGAGAAAATACTAAAGAAGTTTGATTCCTTTGATGTTTCTCCTGTGAGAACTCCCTTTGACGCTAGTAAACATCTTAAGAAGAATAAAGGATATAGTGTGTCTCAACCTGAATATGCAAAGATCATAGGTAGTGTGATGTATTTAATGAATTACACTAGACCAGATATTGCATATGCTGTCAGTAGATTAAGTAGATATACACACAATCCTAATAGATACCACTGGGATGCCTTACGCCATCTATTGAGATATCTTAAAGGGACAATAGATTATTGTCTACACTTCAACAAATTTTCTGCCGTACTAGAAGGATATTGTGATGTAAACTGGGTCACAGATAATGATGAGGTTAACTCTACTAGTGGGTATGTATTTTTACTCGGAGGTGGAGCAATATCTTGGAAGTCCACAAAAAAGACTTGTATAGCCAGATCCACGATGGAATCCGAGTTTATAACACTAGAGTTGGCAAGACAAGAGGCTGAGTGGATCAAAAATCTACTAGGAGATGTACCATTGTGGGGGACATCTGTACCTGTGTCCATACAGTGTGATTCGCAAGTTGCGATATGTACTGCCAAGAACAGTGTTTATAATGGTAAGAGTAGACACATACGTCTTAGGCATGCAGTAGTAAAACAACTGCTAAAGGAAGGAACCATCTCCTTGGAATTTGTTCGATCTGAGAAGAACTTGACTGATCCTTTAACCAAAGGATTAACAAGGAAAATGGTATTAGATTCCTCTATGAACATGGGCCTGAAGCCCTTCGGAGATCCATAG

Protein sequence

MLIFGINMELITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSLYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGYSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFSAVLEGYCDVNWVTDNDEVNSTSGYVFLLGGGAISWKSTKKTCIARSTMESEFITLELARQEAEWIKNLLGDVPLWGTSVPVSIQCDSQVAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLTDPLTKGLTRKMVLDSSMNMGLKPFGDP

Homology

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BLAST of Cmc03g0070181 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 607.4 bits (1565), Expect = 6.7e-170
Identity = 299/313 (95.53%), Postives = 303/313 (96.81%), Query Frame = 0


Query: 1    MLIFGINMELITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSLYVEKILKKF 60
            MLIFG NMELITDTK+FLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQS YVEKILKKF
Sbjct: 1034 MLIFGTNMELITDTKYFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKF 1093

Query: 61   DSFDVSPVRTPFDASKHLKKNKGYSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYT 120
            DSFDVSPVRTPFDASKHLKKNKG SVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYT
Sbjct: 1094 DSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYT 1153

Query: 121  HNPNRYHWDALRHLLRYLKGTIDYCLHFNKFSAVLEGYCDVNWVTDNDEVNSTSGYVFLL 180
            HNPNRYHWDALRHLLRYLKGTIDYCLHF KF AVLEGYCD NWVTDNDEVNSTSGYVFLL
Sbjct: 1154 HNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGYCDANWVTDNDEVNSTSGYVFLL 1213

Query: 181  GGGAISWKSTKKTCIARSTMESEFITLELARQEAEWIKNLLGDVPLWGTSVPVSIQCDSQ 240
            GGGAISWKSTK+TCIARSTMESEFI LELA QEAEWIKNLLGDVPLWGTSVPVSIQCDSQ
Sbjct: 1214 GGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIKNLLGDVPLWGTSVPVSIQCDSQ 1273

Query: 241  VAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLTDPLTKGLTRKMVLD 300
             AICTAKNSVYNGKSRH+RLRHAVVKQLLKEGTISLEFVRSEKNL DPLTKGLTRKMVLD
Sbjct: 1274 AAICTAKNSVYNGKSRHVRLRHAVVKQLLKEGTISLEFVRSEKNLADPLTKGLTRKMVLD 1333

Query: 301  SSMNMGLKPFGDP 314
            SS+NMGLKPFGDP
Sbjct: 1334 SSVNMGLKPFGDP 1346

[Close]

BLAST of Cmc03g0070181 vs. NCBI nr
Match: KAA0049695.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK12177.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 582.0 bits (1499), Expect = 3.0e-162
Identity = 286/306 (93.46%), Postives = 293/306 (95.75%), Query Frame = 0


Query: 8   MELITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSLYVEKILKKFDSFDVSP 67
           MEL+TDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQS YVEKILKKFD FDVSP
Sbjct: 1   MELMTDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDFFDVSP 60

Query: 68  VRTPFDASKHLKKNKGYSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYH 127
           VRTPFDASKHL KNKG SVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNP+RYH
Sbjct: 61  VRTPFDASKHLMKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYH 120

Query: 128 WDALRHLLRYLKGTIDYCLHFNKFSAVLEGYCDVNWVTDNDEVNSTSGYVFLLGGGAISW 187
           WD LRHLLRYLKGTIDYCL+FNKF AVLEGYCD NWVTDNDEVNSTSGYVFLLGGGAISW
Sbjct: 121 WDVLRHLLRYLKGTIDYCLYFNKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGGAISW 180

Query: 188 KSTKKTCIARSTMESEFITLELARQEAEWIKNLLGDVPLWGTSVPVSIQCDSQVAICTAK 247
           KSTK+TCIARSTMESEFI LELA QEAEWIKNLLGDVPLWGT VPVSIQCDSQ AICTAK
Sbjct: 181 KSTKQTCIARSTMESEFIALELAGQEAEWIKNLLGDVPLWGTYVPVSIQCDSQAAICTAK 240

Query: 248 NSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLTDPLTKGLTRKMVLDSSMNMGL 307
           NSVYNGKSRHIRL+HAVVKQLLK+GTIS +FVRSEKNL DPLTKGLTRKMVLDSSMNMGL
Sbjct: 241 NSVYNGKSRHIRLKHAVVKQLLKKGTISFKFVRSEKNLADPLTKGLTRKMVLDSSMNMGL 300

Query: 308 KPFGDP 314
           KPFGDP
Sbjct: 301 KPFGDP 306

[Close]

BLAST of Cmc03g0070181 vs. NCBI nr
Match: TYK26791.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 562.8 bits (1449), Expect = 1.9e-156
Identity = 277/287 (96.52%), Postives = 279/287 (97.21%), Query Frame = 0


Query: 27   LGEADVILGVKIRKNKTSLSLCQSLYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGYSV 86
            LGEADVILGVKIRKNKTSLSLCQS YVEKILKKFDSFDVSPVRTPFDASKHLKKNKG SV
Sbjct: 881  LGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSV 940

Query: 87   SQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL 146
            SQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL
Sbjct: 941  SQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL 1000

Query: 147  HFNKFSAVLEGYCDVNWVTDNDEVNSTSGYVFLLGGGAISWKSTKKTCIARSTMESEFIT 206
            HF KF AVLEGYCD NWVTDNDEVNSTSGYVFLLGGGAISWKSTK+TCIARSTMESEFI 
Sbjct: 1001 HFKKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIA 1060

Query: 207  LELARQEAEWIKNLLGDVPLWGTSVPVSIQCDSQVAICTAKNSVYNGKSRHIRLRHAVVK 266
            LELARQEAEWIKNLLGDVPLWGTSVPVSIQCDSQ AICTAKNSVYNGKSRHIRLRHAVVK
Sbjct: 1061 LELARQEAEWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVK 1120

Query: 267  QLLKEGTISLEFVRSEKNLTDPLTKGLTRKMVLDSSMNMGLKPFGDP 314
            QLLKEGTISLEFVRSEKNL DPLTKGLTRKMVLDSS+NMGLKPFGDP
Sbjct: 1121 QLLKEGTISLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP 1167

[Close]

BLAST of Cmc03g0070181 vs. NCBI nr
Match: KAA0036644.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 560.5 bits (1443), Expect = 9.4e-156
Identity = 276/290 (95.17%), Postives = 279/290 (96.21%), Query Frame = 0


Query: 24  MKDLGEADVILGVKIRKNKTSLSLCQSLYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 83
           MKDLGEADVILGVKIRKNKTSLSLCQS YVEKILKKFDSFDVSPVRTPFDASKHLKKNKG
Sbjct: 1   MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60

Query: 84  YSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID 143
            SVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID
Sbjct: 61  DSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID 120

Query: 144 YCLHFNKFSAVLEGYCDVNWVTDNDEVNSTSGYVFLLGGGAISWKSTKKTCIARSTMESE 203
           YCLHF KF AVLEGYCD NWVTDNDEVNSTSGYVFLLGG AISWKSTK+TCIARSTMESE
Sbjct: 121 YCLHFKKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGEAISWKSTKQTCIARSTMESE 180

Query: 204 FITLELARQEAEWIKNLLGDVPLWGTSVPVSIQCDSQVAICTAKNSVYNGKSRHIRLRHA 263
           FI LELA QEAEWIKNLLGDVPLWGTSVPV IQCDSQ AICTAKNSVYNGKSRH+RLRHA
Sbjct: 181 FIALELAGQEAEWIKNLLGDVPLWGTSVPVFIQCDSQAAICTAKNSVYNGKSRHVRLRHA 240

Query: 264 VVKQLLKEGTISLEFVRSEKNLTDPLTKGLTRKMVLDSSMNMGLKPFGDP 314
           VVKQLLKEGTISLEFVRSEKNL DPLTKGLTRKMVLDSS+NMGLKPFGDP
Sbjct: 241 VVKQLLKEGTISLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP 290

[Close]

BLAST of Cmc03g0070181 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 559.7 bits (1441), Expect = 1.6e-155
Identity = 275/287 (95.82%), Postives = 278/287 (96.86%), Query Frame = 0


Query: 27   LGEADVILGVKIRKNKTSLSLCQSLYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGYSV 86
            LGEADVILGVKIRKNKTSLSLCQS YVEKILKKFDSFDVSPVRTPFDASKHLKKNKG SV
Sbjct: 881  LGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSV 940

Query: 87   SQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL 146
            SQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL
Sbjct: 941  SQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL 1000

Query: 147  HFNKFSAVLEGYCDVNWVTDNDEVNSTSGYVFLLGGGAISWKSTKKTCIARSTMESEFIT 206
            HF KF AVLEGYCD NWVTDNDEVNSTSGYVFLLGGGAISWKSTK+TCIARSTMESEFI 
Sbjct: 1001 HFKKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIA 1060

Query: 207  LELARQEAEWIKNLLGDVPLWGTSVPVSIQCDSQVAICTAKNSVYNGKSRHIRLRHAVVK 266
            LELA QEAEWIKNLLGDVPLWGTSVPVSIQCDSQ AICTAKNSVYNGKSRH+RLRHAVVK
Sbjct: 1061 LELAGQEAEWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHVRLRHAVVK 1120

Query: 267  QLLKEGTISLEFVRSEKNLTDPLTKGLTRKMVLDSSMNMGLKPFGDP 314
            QLLKEGTISLEFVRSEKNL DPLTKGLTRKMVLDSS+NMGLKPFGDP
Sbjct: 1121 QLLKEGTISLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP 1167

[Close]

BLAST of Cmc03g0070181 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 4.5e-52
Identity = 117/306 (38.24%), Postives = 183/306 (59.80%), Query Frame = 0


Query: 1    MLIFGINMELITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTS--LSLCQSLYVEKILK 60
            MLI G +  LI   K  LS  F+MKDLG A  ILG+KI + +TS  L L Q  Y+E++L+
Sbjct: 1012 MLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLE 1071

Query: 61   KFDSFDVSPVRTPFDASKHLKKNKGY---------SVSQPEYAKIIGSVMYLMNYTRPDI 120
            +F+  +  PV TP   + HLK +K           ++++  Y+  +GS+MY M  TRPDI
Sbjct: 1072 RFNMKNAKPVSTPL--AGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDI 1131

Query: 121  AYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFSAVLEGYCDVNWVTDNDE 180
            A+AV  +SR+  NP + HW+A++ +LRYL+GT   CL F     +L+GY D +   D D 
Sbjct: 1132 AHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDN 1191

Query: 181  VNSTSGYVFLLGGGAISWKSTKKTCIARSTMESEFITLELARQEAEWIKNLLGDVPLWGT 240
              S++GY+F   GGAISW+S  + C+A ST E+E+I      +E  W+K  L ++ L   
Sbjct: 1192 RKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQK 1251

Query: 241  SVPVSIQCDSQVAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLTDPL 296
               V   CDSQ AI  +KNS+Y+ +++HI +R+  +++++ + ++ +  + + +N  D L
Sbjct: 1252 EYVV--YCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADML 1311

[Close]

BLAST of Cmc03g0070181 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 5.0e-43
Identity = 104/309 (33.66%), Postives = 167/309 (54.05%), Query Frame = 0


Query: 1    MLIFGINMELITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSLYVEKILKKF 60
            +LI G +  L+  T   LS  F +K+  +    LG++ ++    L L Q  Y   +L + 
Sbjct: 1137 ILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLART 1196

Query: 61   DSFDVSPVRTPFDASKHLKKNKGYSVSQP-EYAKIIGSVMYLMNYTRPDIAYAVSRLSRY 120
            +     PV TP   S  L  + G  +  P EY  I+GS+ YL  +TRPD++YAV+RLS+Y
Sbjct: 1197 NMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLA-FTRPDLSYAVNRLSQY 1256

Query: 121  THNPNRYHWDALRHLLRYLKGTIDYCLHFNKFSAV-LEGYCDVNWVTDNDEVNSTSGYVF 180
             H P   HW+AL+ +LRYL GT D+ +   K + + L  Y D +W  D D+  ST+GY+ 
Sbjct: 1257 MHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIV 1316

Query: 181  LLGGGAISWKSTKKTCIARSTMESEFITLELARQEAEWIKNLLGDVPLWGTSVPVSIQCD 240
             LG   ISW S K+  + RS+ E+E+ ++     E +WI +LL ++ +  +  PV I CD
Sbjct: 1317 YLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPV-IYCD 1376

Query: 241  SQVAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLTDPLTKGLTRKMV 300
            +  A     N V++ + +HI L +  ++  ++ G + +  V +   L D LTK L+R   
Sbjct: 1377 NVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAF 1436

Query: 301  LDSSMNMGL 308
             + S  +G+
Sbjct: 1437 QNFSRKIGV 1443

[Close]

BLAST of Cmc03g0070181 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.1e-42
Identity = 104/309 (33.66%), Postives = 168/309 (54.37%), Query Frame = 0


Query: 1    MLIFGINMELITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSLYVEKILKKF 60
            +LI G +  L+ +T   LS  F +KD  E    LG++ ++  T L L Q  Y+  +L + 
Sbjct: 1154 ILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLART 1213

Query: 61   DSFDVSPVRTPFDASKHLKKNKGYSVSQP-EYAKIIGSVMYLMNYTRPDIAYAVSRLSRY 120
            +     PV TP   S  L    G  ++ P EY  I+GS+ YL  +TRPDI+YAV+RLS++
Sbjct: 1214 NMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLA-FTRPDISYAVNRLSQF 1273

Query: 121  THNPNRYHWDALRHLLRYLKGTIDYCLHFNKFSAV-LEGYCDVNWVTDNDEVNSTSGYVF 180
             H P   H  AL+ +LRYL GT ++ +   K + + L  Y D +W  D D+  ST+GY+ 
Sbjct: 1274 MHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIV 1333

Query: 181  LLGGGAISWKSTKKTCIARSTMESEFITLELARQEAEWIKNLLGDVPLWGTSVPVSIQCD 240
             LG   ISW S K+  + RS+ E+E+ ++     E +WI +LL ++ +  T  PV I CD
Sbjct: 1334 YLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPV-IYCD 1393

Query: 241  SQVAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLTDPLTKGLTRKMV 300
            +  A     N V++ + +HI + +  ++  ++ G + +  V +   L D LTK L+R   
Sbjct: 1394 NVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAF 1453

Query: 301  LDSSMNMGL 308
             + +  +G+
Sbjct: 1454 QNFASKIGV 1460

[Close]

BLAST of Cmc03g0070181 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 157.5 bits (397), Expect = 2.4e-37
Identity = 97/305 (31.80%), Postives = 158/305 (51.80%), Query Frame = 0


Query: 7    NMELITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSLYVEKILKKFDSFDVS 66
            +M  + + K +L   F M DL E    +G++I   +  + L QS YV+KIL KF+  + +
Sbjct: 1097 DMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCN 1156

Query: 67   PVRTPFDASKHLKKNKGYSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRY 126
             V TP  +  + +              +IG +MY+M  TRPD+  AV+ LSRY+   N  
Sbjct: 1157 AVSTPLPSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSE 1216

Query: 127  HWDALRHLLRYLKGTIDYCLHFNK---FSAVLEGYCDVNWVTDNDEVNSTSGYVF-LLGG 186
             W  L+ +LRYLKGTID  L F K   F   + GY D +W     +  ST+GY+F +   
Sbjct: 1217 LWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDF 1276

Query: 187  GAISWKSTKKTCIARSTMESEFITLELARQEAEWIKNLLGDVPLWGTSVPVSIQCDSQVA 246
              I W + ++  +A S+ E+E++ L  A +EA W+K LL  + +     P+ I  D+Q  
Sbjct: 1277 NLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINI-KLENPIKIYEDNQGC 1336

Query: 247  ICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLTDPLTKGLTRKMVLDSS 306
            I  A N   + +++HI +++   ++ ++   I LE++ +E  L D  TK L     ++  
Sbjct: 1337 ISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELR 1396

Query: 307  MNMGL 308
              +GL
Sbjct: 1397 DKLGL 1400

[Close]

BLAST of Cmc03g0070181 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.2e-28
Identity = 76/221 (34.39%), Postives = 121/221 (54.75%), Query Frame = 0


Query: 1   MLIFGINMELITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSLYVEKILKKF 60
           +L+ G +  L+    F LSS F MKDLG     LG++I+ + + L L Q+ Y E+IL   
Sbjct: 10  ILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNA 69

Query: 61  DSFDVSPVRTPFDASKHLKKNKGYSVSQ----PEYAKIIGSVMYLMNYTRPDIAYAVSRL 120
              D  P+ TP      LK N   S ++     ++  I+G++ YL   TRPDI+YAV+ +
Sbjct: 70  GMLDCKPMSTPLP----LKLNSSVSTAKYPDPSDFRSIVGALQYL-TLTRPDISYAVNIV 129

Query: 121 SRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFSAV-LEGYCDVNWVTDNDEVNSTSG 180
            +  H P    +D L+ +LRY+KGTI + L+ +K S + ++ +CD +W        ST+G
Sbjct: 130 CQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTG 189

Query: 181 YVFLLGGGAISWKSTKKTCIARSTMESEFITLELARQEAEW 217
           +   LG   ISW + ++  ++RS+ E+E+  L L   E  W
Sbjct: 190 FCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc03g0070181 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 607.4 bits (1565), Expect = 3.3e-170
Identity = 299/313 (95.53%), Postives = 303/313 (96.81%), Query Frame = 0


Query: 1    MLIFGINMELITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSLYVEKILKKF 60
            MLIFG NMELITDTK+FLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQS YVEKILKKF
Sbjct: 1034 MLIFGTNMELITDTKYFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKF 1093

Query: 61   DSFDVSPVRTPFDASKHLKKNKGYSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYT 120
            DSFDVSPVRTPFDASKHLKKNKG SVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYT
Sbjct: 1094 DSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYT 1153

Query: 121  HNPNRYHWDALRHLLRYLKGTIDYCLHFNKFSAVLEGYCDVNWVTDNDEVNSTSGYVFLL 180
            HNPNRYHWDALRHLLRYLKGTIDYCLHF KF AVLEGYCD NWVTDNDEVNSTSGYVFLL
Sbjct: 1154 HNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGYCDANWVTDNDEVNSTSGYVFLL 1213

Query: 181  GGGAISWKSTKKTCIARSTMESEFITLELARQEAEWIKNLLGDVPLWGTSVPVSIQCDSQ 240
            GGGAISWKSTK+TCIARSTMESEFI LELA QEAEWIKNLLGDVPLWGTSVPVSIQCDSQ
Sbjct: 1214 GGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIKNLLGDVPLWGTSVPVSIQCDSQ 1273

Query: 241  VAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLTDPLTKGLTRKMVLD 300
             AICTAKNSVYNGKSRH+RLRHAVVKQLLKEGTISLEFVRSEKNL DPLTKGLTRKMVLD
Sbjct: 1274 AAICTAKNSVYNGKSRHVRLRHAVVKQLLKEGTISLEFVRSEKNLADPLTKGLTRKMVLD 1333

Query: 301  SSMNMGLKPFGDP 314
            SS+NMGLKPFGDP
Sbjct: 1334 SSVNMGLKPFGDP 1346

[Close]

BLAST of Cmc03g0070181 vs. ExPASy TrEMBL
Match: A0A5A7U7W6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001180 PE=4 SV=1)

HSP 1 Score: 582.0 bits (1499), Expect = 1.5e-162
Identity = 286/306 (93.46%), Postives = 293/306 (95.75%), Query Frame = 0


Query: 8   MELITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSLYVEKILKKFDSFDVSP 67
           MEL+TDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQS YVEKILKKFD FDVSP
Sbjct: 1   MELMTDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDFFDVSP 60

Query: 68  VRTPFDASKHLKKNKGYSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYH 127
           VRTPFDASKHL KNKG SVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNP+RYH
Sbjct: 61  VRTPFDASKHLMKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYH 120

Query: 128 WDALRHLLRYLKGTIDYCLHFNKFSAVLEGYCDVNWVTDNDEVNSTSGYVFLLGGGAISW 187
           WD LRHLLRYLKGTIDYCL+FNKF AVLEGYCD NWVTDNDEVNSTSGYVFLLGGGAISW
Sbjct: 121 WDVLRHLLRYLKGTIDYCLYFNKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGGAISW 180

Query: 188 KSTKKTCIARSTMESEFITLELARQEAEWIKNLLGDVPLWGTSVPVSIQCDSQVAICTAK 247
           KSTK+TCIARSTMESEFI LELA QEAEWIKNLLGDVPLWGT VPVSIQCDSQ AICTAK
Sbjct: 181 KSTKQTCIARSTMESEFIALELAGQEAEWIKNLLGDVPLWGTYVPVSIQCDSQAAICTAK 240

Query: 248 NSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLTDPLTKGLTRKMVLDSSMNMGL 307
           NSVYNGKSRHIRL+HAVVKQLLK+GTIS +FVRSEKNL DPLTKGLTRKMVLDSSMNMGL
Sbjct: 241 NSVYNGKSRHIRLKHAVVKQLLKKGTISFKFVRSEKNLADPLTKGLTRKMVLDSSMNMGL 300

Query: 308 KPFGDP 314
           KPFGDP
Sbjct: 301 KPFGDP 306

[Close]

BLAST of Cmc03g0070181 vs. ExPASy TrEMBL
Match: A0A5D3DSQ3 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00930 PE=4 SV=1)

HSP 1 Score: 562.8 bits (1449), Expect = 9.2e-157
Identity = 277/287 (96.52%), Postives = 279/287 (97.21%), Query Frame = 0


Query: 27   LGEADVILGVKIRKNKTSLSLCQSLYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGYSV 86
            LGEADVILGVKIRKNKTSLSLCQS YVEKILKKFDSFDVSPVRTPFDASKHLKKNKG SV
Sbjct: 881  LGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSV 940

Query: 87   SQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL 146
            SQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL
Sbjct: 941  SQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL 1000

Query: 147  HFNKFSAVLEGYCDVNWVTDNDEVNSTSGYVFLLGGGAISWKSTKKTCIARSTMESEFIT 206
            HF KF AVLEGYCD NWVTDNDEVNSTSGYVFLLGGGAISWKSTK+TCIARSTMESEFI 
Sbjct: 1001 HFKKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIA 1060

Query: 207  LELARQEAEWIKNLLGDVPLWGTSVPVSIQCDSQVAICTAKNSVYNGKSRHIRLRHAVVK 266
            LELARQEAEWIKNLLGDVPLWGTSVPVSIQCDSQ AICTAKNSVYNGKSRHIRLRHAVVK
Sbjct: 1061 LELARQEAEWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVK 1120

Query: 267  QLLKEGTISLEFVRSEKNLTDPLTKGLTRKMVLDSSMNMGLKPFGDP 314
            QLLKEGTISLEFVRSEKNL DPLTKGLTRKMVLDSS+NMGLKPFGDP
Sbjct: 1121 QLLKEGTISLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP 1167

[Close]

BLAST of Cmc03g0070181 vs. ExPASy TrEMBL
Match: A0A5A7SZD1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3921G00130 PE=4 SV=1)

HSP 1 Score: 560.5 bits (1443), Expect = 4.6e-156
Identity = 276/290 (95.17%), Postives = 279/290 (96.21%), Query Frame = 0


Query: 24  MKDLGEADVILGVKIRKNKTSLSLCQSLYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 83
           MKDLGEADVILGVKIRKNKTSLSLCQS YVEKILKKFDSFDVSPVRTPFDASKHLKKNKG
Sbjct: 1   MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60

Query: 84  YSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID 143
            SVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID
Sbjct: 61  DSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID 120

Query: 144 YCLHFNKFSAVLEGYCDVNWVTDNDEVNSTSGYVFLLGGGAISWKSTKKTCIARSTMESE 203
           YCLHF KF AVLEGYCD NWVTDNDEVNSTSGYVFLLGG AISWKSTK+TCIARSTMESE
Sbjct: 121 YCLHFKKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGEAISWKSTKQTCIARSTMESE 180

Query: 204 FITLELARQEAEWIKNLLGDVPLWGTSVPVSIQCDSQVAICTAKNSVYNGKSRHIRLRHA 263
           FI LELA QEAEWIKNLLGDVPLWGTSVPV IQCDSQ AICTAKNSVYNGKSRH+RLRHA
Sbjct: 181 FIALELAGQEAEWIKNLLGDVPLWGTSVPVFIQCDSQAAICTAKNSVYNGKSRHVRLRHA 240

Query: 264 VVKQLLKEGTISLEFVRSEKNLTDPLTKGLTRKMVLDSSMNMGLKPFGDP 314
           VVKQLLKEGTISLEFVRSEKNL DPLTKGLTRKMVLDSS+NMGLKPFGDP
Sbjct: 241 VVKQLLKEGTISLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP 290

[Close]

BLAST of Cmc03g0070181 vs. ExPASy TrEMBL
Match: A0A5D3C7Z8 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001160 PE=4 SV=1)

HSP 1 Score: 559.7 bits (1441), Expect = 7.8e-156
Identity = 276/287 (96.17%), Postives = 278/287 (96.86%), Query Frame = 0


Query: 27   LGEADVILGVKIRKNKTSLSLCQSLYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGYSV 86
            LGEADVILGVKIRKNKTSLSLCQS YVEKILKKFDSFDVSPVRTPFDASKHLKKNKG SV
Sbjct: 881  LGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSV 940

Query: 87   SQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL 146
            SQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL
Sbjct: 941  SQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL 1000

Query: 147  HFNKFSAVLEGYCDVNWVTDNDEVNSTSGYVFLLGGGAISWKSTKKTCIARSTMESEFIT 206
            HFNKF AVLEGYCD NWVTDNDEVNSTSGYVFLLGGGAISWKSTK+TCIARSTMESEFI 
Sbjct: 1001 HFNKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIA 1060

Query: 207  LELARQEAEWIKNLLGDVPLWGTSVPVSIQCDSQVAICTAKNSVYNGKSRHIRLRHAVVK 266
            LELA QEAEWIKNLLGDVPLWGTSVPVSIQCDSQ AICTAKNSVYNGKSRHIRLRHAVVK
Sbjct: 1061 LELAGQEAEWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVK 1120

Query: 267  QLLKEGTISLEFVRSEKNLTDPLTKGLTRKMVLDSSMNMGLKPFGDP 314
            QLLKEGTISLEFVRSEKNL DPLTKGLTRKMVLDSS+NM LKPFGDP
Sbjct: 1121 QLLKEGTISLEFVRSEKNLADPLTKGLTRKMVLDSSVNMDLKPFGDP 1167

[Close]

BLAST of Cmc03g0070181 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 138.7 bits (348), Expect = 8.2e-33
Identity = 84/281 (29.89%), Postives = 149/281 (53.02%), Query Frame = 0


Query: 1   MLIFGINMELITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSLYVEKILKKF 60
           ++I   N   + + K  L S F+++DLG     LG++I ++   +++CQ  Y   +L + 
Sbjct: 287 IIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDET 346

Query: 61  DSFDVSPVRTPFDASKHLKKNKGYS-VSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRY 120
                 P   P D S     + G   V    Y ++IG +MYL   TR DI++AV++LS++
Sbjct: 347 GLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYL-QITRLDISFAVNKLSQF 406

Query: 121 THNPNRYHWDALRHLLRYLKGTIDYCLHFNKFSAV-LEGYCDVNWVTDNDEVNSTSGYVF 180
           +  P   H  A+  +L Y+KGT+   L ++  + + L+ + D ++ +  D   ST+GY  
Sbjct: 407 SEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCM 466

Query: 181 LLGGGAISWKSTKKTCIARSTMESEFITLELARQEAEWIKNLLGDVPLWGTSVPVSIQCD 240
            LG   ISWKS K+  +++S+ E+E+  L  A  E  W+     ++ L   S P  + CD
Sbjct: 467 FLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQL-PLSKPTLLFCD 526

Query: 241 SQVAICTAKNSVYNGKSRHIRLR-HAVVKQLLKEGTISLEF 279
           +  AI  A N+V++ +++HI    H+V ++ + + T+S  F
Sbjct: 527 NTAAIHIATNAVFHERTKHIESDCHSVRERSVYQATLSYSF 565

[Close]

BLAST of Cmc03g0070181 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 128.6 bits (322), Expect = 8.5e-30
Identity = 76/221 (34.39%), Postives = 121/221 (54.75%), Query Frame = 0


Query: 1   MLIFGINMELITDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSLYVEKILKKF 60
           +L+ G +  L+    F LSS F MKDLG     LG++I+ + + L L Q+ Y E+IL   
Sbjct: 10  ILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNA 69

Query: 61  DSFDVSPVRTPFDASKHLKKNKGYSVSQ----PEYAKIIGSVMYLMNYTRPDIAYAVSRL 120
              D  P+ TP      LK N   S ++     ++  I+G++ YL   TRPDI+YAV+ +
Sbjct: 70  GMLDCKPMSTPLP----LKLNSSVSTAKYPDPSDFRSIVGALQYL-TLTRPDISYAVNIV 129

Query: 121 SRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFSAV-LEGYCDVNWVTDNDEVNSTSG 180
            +  H P    +D L+ +LRY+KGTI + L+ +K S + ++ +CD +W        ST+G
Sbjct: 130 CQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTG 189

Query: 181 YVFLLGGGAISWKSTKKTCIARSTMESEFITLELARQEAEW 217
           +   LG   ISW + ++  ++RS+ E+E+  L L   E  W
Sbjct: 190 FCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc03g0070181 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.9e-05
Identity = 27/83 (32.53%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 99  MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFSAV-LEG 158
           MYL   TRPD+ +AV+RLS+++         A+  +L Y+KGT+   L ++  S + L+ 
Sbjct: 1   MYL-TITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 60

Query: 159 YCDVNWVTDNDEVNSTSGYVFLL 181
           + D +W +  D   S +G+  L+
Sbjct: 61  FADSDWASCPDTRRSVTGFCSLV 82

The following BLAST results are available for this feature:

BLAST of Cmc03g0070181 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06518.1	6.7e-170	95.53	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0049695.1	3.0e-162	93.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK26791.1	1.9e-156	96.52	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036644.1	9.4e-156	95.17	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK04394.1	1.6e-155	95.82	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0070181 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	4.5e-52	38.24	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	5.0e-43	33.66	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.1e-42	33.66	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	2.4e-37	31.80	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92519	1.2e-28	34.39	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc03g0070181 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5T2	3.3e-170	95.53	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7U7W6	1.5e-162	93.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DSQ3	9.2e-157	96.52	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SZD1	4.6e-156	95.17	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3C7Z8	7.8e-156	96.17	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc03g0070181 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	8.2e-33	29.89	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	8.5e-30	34.39	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	1.9e-05	32.53	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..72 e-value: 5.5E-11 score: 42.5
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 152..281
None	No IPR available	PANTHER	PTHR11439:SF273	RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOG	coord: 152..281
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 156..296 e-value: 4.28749E-55 score: 173.808
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 81..260

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0070181.1	Cmc03g0070181.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding