Cmc03g0066471 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0066471
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr03: 8439467 .. 8440420 (-)
RNA-Seq Expression	Cmc03g0066471
Synteny	Cmc03g0066471

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTTTGGTTTAACTAATGCCCCTGCAGTGTTCATGGACCTGATGAACAGGGTGTTTAAGGACTTTCTAGACCAATTCGTCATAGTCTTCATTGACGATATCTTGATCTATTCCAAGACTGAGGCCGAACACGAAGAGCACTTGCACCAAGTCTTGGAGACCCTTCGAGCTCATAAGCTATACGCCAAGTTCTCCAAGTGTGAGTTCTGGTTAAAGAAGGTGACATTTTTAGGGCACGTGGTTTCCAGTGAGGGAGTCTCGGTGGACCCAGCTAAGGTCGAAGCGGTGACCAACTGGCCTCGACCGTCTACAGTCAGTGAGATTCGCAGTTTTCTGGGTCTGGCAGGATACTACAGGAGGTTTGTAGAAGACTTCTCACGCATAGCCAGCCCATTGACCCAGTTGACCAGGAAGGGAACCCCTTTTGTCTGGAGCCCAGCATGTGAGAGTAGTTTCCAAGAGCTTAAGCAGAAGCTAGTGACGGCACCAGTCCTGACAGTGCCTGATGGGTCGGGAAGTTTTGTGATCTATAGTGATGCCTCTAAGAAAGGACTGGGATGTGTCCTGATGCAGCAAGGTAAGGTAGTTGCGTATGCCTCACGCCAGTTGAAGAATCATGAGCAGAACTACCCTACCCACGACTTGGAGTTGGCAGCTGTAGTCTTTGCACTGAAGATATGGAGGCACTATCTGTACGGTGAGAAGATTCAGATTTACACCGACCACAAGAGCCTGAAGTATTTCTTCACTCAGAAGGAGTTGAACATGAGGCAGAGGAGGTGGCTCGAGTTGGTGAAAGACTACGACTGCGAGATCCTGTACCATCCAGGTAAAGCAAATGTAGTGGCTGACGCGCTGAGTAGGAAGGTTGCACATTCAGCAGCGCTAATCACGAAGCAGACCCCCCCTTACTCAGGGATTTGGAGAGAGCCGAGATTGCAGTCTCAGTAG

mRNA sequence

ATGTCCTTTGGTTTAACTAATGCCCCTGCAGTGTTCATGGACCTGATGAACAGGGTGTTTAAGGACTTTCTAGACCAATTCGTCATAGTCTTCATTGACGATATCTTGATCTATTCCAAGACTGAGGCCGAACACGAAGAGCACTTGCACCAAGTCTTGGAGACCCTTCGAGCTCATAAGCTATACGCCAAGTTCTCCAAGTGTGAGTTCTGGTTAAAGAAGGTGACATTTTTAGGGCACGTGGTTTCCAGTGAGGGAGTCTCGGTGGACCCAGCTAAGGTCGAAGCGGTGACCAACTGGCCTCGACCGTCTACAGTCAGTGAGATTCGCAGTTTTCTGGGTCTGGCAGGATACTACAGGAGGTTTGTAGAAGACTTCTCACGCATAGCCAGCCCATTGACCCAGTTGACCAGGAAGGGAACCCCTTTTGTCTGGAGCCCAGCATGTGAGAGTAGTTTCCAAGAGCTTAAGCAGAAGCTAGTGACGGCACCAGTCCTGACAGTGCCTGATGGGTCGGGAAGTTTTGTGATCTATAGTGATGCCTCTAAGAAAGGACTGGGATGTGTCCTGATGCAGCAAGGTAAGGTAGTTGCGTATGCCTCACGCCAGTTGAAGAATCATGAGCAGAACTACCCTACCCACGACTTGGAGTTGGCAGCTGTAGTCTTTGCACTGAAGATATGGAGGCACTATCTGTACGGTGAGAAGATTCAGATTTACACCGACCACAAGAGCCTGAAGTATTTCTTCACTCAGAAGGAGTTGAACATGAGGCAGAGGAGGTGGCTCGAGTTGGTGAAAGACTACGACTGCGAGATCCTGTACCATCCAGGTAAAGCAAATGTAGTGGCTGACGCGCTGAGTAGGAAGGTTGCACATTCAGCAGCGCTAATCACGAAGCAGACCCCCCCTTACTCAGGGATTTGGAGAGAGCCGAGATTGCAGTCTCAGTAG

Coding sequence (CDS)

ATGTCCTTTGGTTTAACTAATGCCCCTGCAGTGTTCATGGACCTGATGAACAGGGTGTTTAAGGACTTTCTAGACCAATTCGTCATAGTCTTCATTGACGATATCTTGATCTATTCCAAGACTGAGGCCGAACACGAAGAGCACTTGCACCAAGTCTTGGAGACCCTTCGAGCTCATAAGCTATACGCCAAGTTCTCCAAGTGTGAGTTCTGGTTAAAGAAGGTGACATTTTTAGGGCACGTGGTTTCCAGTGAGGGAGTCTCGGTGGACCCAGCTAAGGTCGAAGCGGTGACCAACTGGCCTCGACCGTCTACAGTCAGTGAGATTCGCAGTTTTCTGGGTCTGGCAGGATACTACAGGAGGTTTGTAGAAGACTTCTCACGCATAGCCAGCCCATTGACCCAGTTGACCAGGAAGGGAACCCCTTTTGTCTGGAGCCCAGCATGTGAGAGTAGTTTCCAAGAGCTTAAGCAGAAGCTAGTGACGGCACCAGTCCTGACAGTGCCTGATGGGTCGGGAAGTTTTGTGATCTATAGTGATGCCTCTAAGAAAGGACTGGGATGTGTCCTGATGCAGCAAGGTAAGGTAGTTGCGTATGCCTCACGCCAGTTGAAGAATCATGAGCAGAACTACCCTACCCACGACTTGGAGTTGGCAGCTGTAGTCTTTGCACTGAAGATATGGAGGCACTATCTGTACGGTGAGAAGATTCAGATTTACACCGACCACAAGAGCCTGAAGTATTTCTTCACTCAGAAGGAGTTGAACATGAGGCAGAGGAGGTGGCTCGAGTTGGTGAAAGACTACGACTGCGAGATCCTGTACCATCCAGGTAAAGCAAATGTAGTGGCTGACGCGCTGAGTAGGAAGGTTGCACATTCAGCAGCGCTAATCACGAAGCAGACCCCCCCTTACTCAGGGATTTGGAGAGAGCCGAGATTGCAGTCTCAGTAG

Protein sequence

MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPPYSGIWREPRLQSQ

Homology

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BLAST of Cmc03g0066471 vs. NCBI nr
Match: KAA0025917.1 (pol protein [Cucumis melo var. makuwa] >KAA0042949.1 pol protein [Cucumis melo var. makuwa] >KAA0048622.1 pol protein [Cucumis melo var. makuwa] >KAA0056306.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 607.1 bits (1564), Expect = 8.9e-170
Identity = 301/303 (99.34%), Postives = 302/303 (99.67%), Query Frame = 0


Query: 1    MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHK 60
            MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHK
Sbjct: 730  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHK 789

Query: 61   LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNWPRPSTVSEIRSFLGLAGYYR 120
            LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNWPRPSTVSEIRSFLGLAGYYR
Sbjct: 790  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNWPRPSTVSEIRSFLGLAGYYR 849

Query: 121  RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSD 180
            RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSD
Sbjct: 850  RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSD 909

Query: 181  ASKKGLGCVLMQQGKVVAYASRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 240
            ASKKGLG VLMQQGKVVAYASRQLKNHE+NYPTHDLELAAVVFALKIWRHYLYGEKIQIY
Sbjct: 910  ASKKGLGGVLMQQGKVVAYASRQLKNHERNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 969

Query: 241  TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 300
            TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Sbjct: 970  TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 1029

Query: 301  QTP 304
            QTP
Sbjct: 1030 QTP 1032

[Close]

BLAST of Cmc03g0066471 vs. NCBI nr
Match: KAA0066951.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 602.4 bits (1552), Expect = 2.2e-168
Identity = 297/303 (98.02%), Postives = 301/303 (99.34%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHK 60
           MSFGLTNAPAVFMDLMNRVFKDFLD FVIVFIDDILIYSKTEAEHEEHLHQVLETLRA+K
Sbjct: 521 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 580

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNWPRPSTVSEIRSFLGLAGYYR 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVSVDPAK+EAVTNWPRPSTVSEIRSFLGLAGYYR
Sbjct: 581 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 640

Query: 121 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSD 180
           RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSG+FVIYSD
Sbjct: 641 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGNFVIYSD 700

Query: 181 ASKKGLGCVLMQQGKVVAYASRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 240
           ASKKGLGCVLMQQGKVVAYASRQLK HEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY
Sbjct: 701 ASKKGLGCVLMQQGKVVAYASRQLKVHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 760

Query: 241 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 300
           TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Sbjct: 761 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 820

Query: 301 QTP 304
           QTP
Sbjct: 821 QTP 823

[Close]

BLAST of Cmc03g0066471 vs. NCBI nr
Match: KAA0054634.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 602.4 bits (1552), Expect = 2.2e-168
Identity = 297/303 (98.02%), Postives = 301/303 (99.34%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHK 60
           MSFGLTNAPAVFMDLMNRVFKDFLD FVIVFIDDILIYSKTEAEHEEHLHQVLETLRA+K
Sbjct: 682 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 741

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNWPRPSTVSEIRSFLGLAGYYR 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVSVDPAK+EAVTNWPRPSTVSEIRSFLGLAGYYR
Sbjct: 742 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 801

Query: 121 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSD 180
           RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSG+FVIYSD
Sbjct: 802 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGNFVIYSD 861

Query: 181 ASKKGLGCVLMQQGKVVAYASRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 240
           ASKKGLGCVLMQQGKVVAYASRQLK HEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY
Sbjct: 862 ASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 921

Query: 241 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 300
           TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Sbjct: 922 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 981

Query: 301 QTP 304
           QTP
Sbjct: 982 QTP 984

[Close]

BLAST of Cmc03g0066471 vs. NCBI nr
Match: KAA0063793.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 600.5 bits (1547), Expect = 8.3e-168
Identity = 296/303 (97.69%), Postives = 300/303 (99.01%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHK 60
           MSFGLTNAPAVFMDLMNRVFKDFLD FVIVFIDDILIYSKTEAEHEEHLHQVLETLRA+K
Sbjct: 251 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 310

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNWPRPSTVSEIRSFLGLAGYYR 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVSVDPAK+EAVTNWPRPSTVSEIRSFLGLAGYYR
Sbjct: 311 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 370

Query: 121 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSD 180
           RFVEDFSRIASPLTQLTRKGTPFVWSPACE SFQELKQKLVTAPVLTVPDGSG+FVIYSD
Sbjct: 371 RFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSD 430

Query: 181 ASKKGLGCVLMQQGKVVAYASRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 240
           ASKKGLGCVLMQQGKVVAYASRQLK HEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY
Sbjct: 431 ASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 490

Query: 241 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 300
           TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Sbjct: 491 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 550

Query: 301 QTP 304
           QTP
Sbjct: 551 QTP 553

[Close]

BLAST of Cmc03g0066471 vs. NCBI nr
Match: KAA0060745.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 600.1 bits (1546), Expect = 1.1e-167
Identity = 296/303 (97.69%), Postives = 300/303 (99.01%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHK 60
           MSFGLTNAPAVFMDLMNRVFKDFLD FVIVFIDDILIYSKTEAEHEEHLHQVLETLRA+K
Sbjct: 685 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 744

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNWPRPSTVSEIRSFLGLAGYYR 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVSVDPAK+EAVTNWPRPSTVSEIRSFLGLAGYYR
Sbjct: 745 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 804

Query: 121 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSD 180
           RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLV APVLTVPDGSG+FVIYSD
Sbjct: 805 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVIAPVLTVPDGSGNFVIYSD 864

Query: 181 ASKKGLGCVLMQQGKVVAYASRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 240
           ASKKGLGCVLMQQGKVVAYASRQLK HEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY
Sbjct: 865 ASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 924

Query: 241 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 300
           TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Sbjct: 925 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 984

Query: 301 QTP 304
           QTP
Sbjct: 985 QTP 987

[Close]

BLAST of Cmc03g0066471 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 2.4e-61
Identity = 119/290 (41.03%), Postives = 179/290 (61.72%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHK 60
           M FGL NAPA F   MN + +  L++  +V++DDI+++S +  EH + L  V E L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNWPRPSTVSEIRSFLGLAGYYR 120
           L  +  KCEF  ++ TFLGHV++ +G+  +P K+EA+  +P P+   EI++FLGL GYYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFVEDFSRIASPLTQLTRKGTPF-VWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYS 180
           +F+ +F+ IA P+T+  +K       +P  +S+F++LK  +   P+L VPD +  F + +
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513

Query: 181 DASKKGLGCVLMQQGKVVAYASRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQI 240
           DAS   LG VL Q G  ++Y SR L  HE NY T + EL A+V+A K +RHYL G   +I
Sbjct: 514 DASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEI 573

Query: 241 YTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSR 290
            +DH+ L + +  K+ N +  RW   + ++D +I Y  GK N VADALSR
Sbjct: 574 SSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSR 623

[Close]

BLAST of Cmc03g0066471 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.6e-57
Identity = 115/290 (39.66%), Postives = 172/290 (59.31%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHK 60
           M FGL NAPA F   MN + +  L++  +V++DDI+I+S +  EH   +  V   L    
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNWPRPSTVSEIRSFLGLAGYYR 120
           L  +  KCEF  K+  FLGH+V+ +G+  +P KV+A+ ++P P+   EIR+FLGL GYYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFVEDFSRIASPLTQLTRKGTPF-VWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYS 180
           +F+ +++ IA P+T   +K T           +F++LK  ++  P+L +PD    FV+ +
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTT 512

Query: 181 DASKKGLGCVLMQQGKVVAYASRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQI 240
           DAS   LG VL Q G  +++ SR L +HE NY   + EL A+V+A K +RHYL G +  I
Sbjct: 513 DASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLI 572

Query: 241 YTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSR 290
            +DH+ L++    KE   +  RW   + +Y  +I Y  GK N VADALSR
Sbjct: 573 ASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSR 622

[Close]

BLAST of Cmc03g0066471 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 8.9e-56
Identity = 110/305 (36.07%), Postives = 181/305 (59.34%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHK 60
           + FGL NAPA+F  +++ + ++ + +   V+IDDI+++S+    H ++L  VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNWPRPSTVSEIRSFLGLAGYYR 120
           L     K  F   +V FLG++V+++G+  DP KV A++  P P++V E++ FLG+  YYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFVEDFSRIASPLTQLTR-----------KGTPFVWSPACESSFQELKQKLVTAPVLTVP 180
           +F++D++++A PLT LTR              P         SF +LK  L ++ +L  P
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFP 429

Query: 181 DGSGSFVIYSDASKKGLGCVLMQ----QGKVVAYASRQLKNHEQNYPTHDLELAAVVFAL 240
             +  F + +DAS   +G VL Q    + + +AY SR L   E+NY T + E+ A++++L
Sbjct: 430 CFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSL 489

Query: 241 KIWRHYLYGE-KIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVA 290
              R YLYG   I++YTDH+ L +    +  N + +RW   +++Y+CE++Y PGK+NVVA
Sbjct: 490 DNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVA 549

[Close]

BLAST of Cmc03g0066471 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 6.4e-54
Identity = 110/303 (36.30%), Postives = 178/303 (58.75%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHK 60
           + FGL NA ++F   ++ V ++ + +   V++DD++I+S+ E++H  H+  VL+ L    
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNWPRPSTVSEIRSFLGLAGYYR 120
           +     K  F+ + V +LG +VS +G   DP KV+A+  +P P  V ++RSFLGLA YYR
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYR 428

Query: 121 RFVEDFSRIASPLTQLTR-----------KGTPFVWSPACESSFQELKQKLVTAPV-LTV 180
            F++DF+ IA P+T + +           K  P  ++    ++FQ L+  L +  V L  
Sbjct: 429 VFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKY 488

Query: 181 PDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKNHEQNYPTHDLELAAVVFALKIW 240
           PD    F + +DAS  G+G VL Q+G+ +   SR LK  EQNY T++ EL A+V+AL   
Sbjct: 489 PDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKL 548

Query: 241 RHYLYGEK-IQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAL 291
           +++LYG + I I+TDH+ L +    +  N + +RW   +  ++ ++ Y PGK N VADAL
Sbjct: 549 QNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADAL 608

[Close]

BLAST of Cmc03g0066471 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 5.3e-48
Identity = 107/300 (35.67%), Postives = 167/300 (55.67%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHK 60
           M +G++ APA F   +N +  +  +  V+ ++DDILI+SK+E+EH +H+  VL+ L+   
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNWPRPSTVSEIRSFLGLAGYYR 120
           L    +KCEF   +V F+G+ +S +G +     ++ V  W +P    E+R FLG   Y R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSD 180
           +F+   S++  PL  L +K   + W+P    + + +KQ LV+ PVL   D S   ++ +D
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETD 713

Query: 181 ASKKGLGCVLMQQGK-----VVAYASRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYG- 240
           AS   +G VL Q+        V Y S ++   + NY   D E+ A++ +LK WRHYL   
Sbjct: 714 ASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLEST 773

Query: 241 -EKIQIYTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKV 292
            E  +I TDH++L    T +    N R  RW   ++D++ EI Y PG AN +ADALSR V
Sbjct: 774 IEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIV 833

[Close]

BLAST of Cmc03g0066471 vs. ExPASy TrEMBL
Match: A0A5A7TP01 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1484G00070 PE=4 SV=1)

HSP 1 Score: 607.1 bits (1564), Expect = 4.3e-170
Identity = 301/303 (99.34%), Postives = 302/303 (99.67%), Query Frame = 0


Query: 1    MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHK 60
            MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHK
Sbjct: 730  MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHK 789

Query: 61   LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNWPRPSTVSEIRSFLGLAGYYR 120
            LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNWPRPSTVSEIRSFLGLAGYYR
Sbjct: 790  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNWPRPSTVSEIRSFLGLAGYYR 849

Query: 121  RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSD 180
            RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSD
Sbjct: 850  RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSD 909

Query: 181  ASKKGLGCVLMQQGKVVAYASRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 240
            ASKKGLG VLMQQGKVVAYASRQLKNHE+NYPTHDLELAAVVFALKIWRHYLYGEKIQIY
Sbjct: 910  ASKKGLGGVLMQQGKVVAYASRQLKNHERNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 969

Query: 241  TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 300
            TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Sbjct: 970  TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 1029

Query: 301  QTP 304
            QTP
Sbjct: 1030 QTP 1032

[Close]

BLAST of Cmc03g0066471 vs. ExPASy TrEMBL
Match: A0A5A7VMR4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold550G00890 PE=4 SV=1)

HSP 1 Score: 602.4 bits (1552), Expect = 1.1e-168
Identity = 297/303 (98.02%), Postives = 301/303 (99.34%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHK 60
           MSFGLTNAPAVFMDLMNRVFKDFLD FVIVFIDDILIYSKTEAEHEEHLHQVLETLRA+K
Sbjct: 521 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 580

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNWPRPSTVSEIRSFLGLAGYYR 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVSVDPAK+EAVTNWPRPSTVSEIRSFLGLAGYYR
Sbjct: 581 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 640

Query: 121 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSD 180
           RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSG+FVIYSD
Sbjct: 641 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGNFVIYSD 700

Query: 181 ASKKGLGCVLMQQGKVVAYASRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 240
           ASKKGLGCVLMQQGKVVAYASRQLK HEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY
Sbjct: 701 ASKKGLGCVLMQQGKVVAYASRQLKVHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 760

Query: 241 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 300
           TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Sbjct: 761 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 820

Query: 301 QTP 304
           QTP
Sbjct: 821 QTP 823

[Close]

BLAST of Cmc03g0066471 vs. ExPASy TrEMBL
Match: A0A5A7UHL7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004390 PE=4 SV=1)

HSP 1 Score: 602.4 bits (1552), Expect = 1.1e-168
Identity = 297/303 (98.02%), Postives = 301/303 (99.34%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHK 60
           MSFGLTNAPAVFMDLMNRVFKDFLD FVIVFIDDILIYSKTEAEHEEHLHQVLETLRA+K
Sbjct: 682 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 741

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNWPRPSTVSEIRSFLGLAGYYR 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVSVDPAK+EAVTNWPRPSTVSEIRSFLGLAGYYR
Sbjct: 742 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 801

Query: 121 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSD 180
           RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSG+FVIYSD
Sbjct: 802 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGNFVIYSD 861

Query: 181 ASKKGLGCVLMQQGKVVAYASRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 240
           ASKKGLGCVLMQQGKVVAYASRQLK HEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY
Sbjct: 862 ASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 921

Query: 241 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 300
           TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Sbjct: 922 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 981

Query: 301 QTP 304
           QTP
Sbjct: 982 QTP 984

[Close]

BLAST of Cmc03g0066471 vs. ExPASy TrEMBL
Match: A0A5A7V6R2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00070 PE=4 SV=1)

HSP 1 Score: 600.5 bits (1547), Expect = 4.0e-168
Identity = 296/303 (97.69%), Postives = 300/303 (99.01%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHK 60
           MSFGLTNAPAVFMDLMNRVFKDFLD FVIVFIDDILIYSKTEAEHEEHLHQVLETLRA+K
Sbjct: 251 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 310

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNWPRPSTVSEIRSFLGLAGYYR 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVSVDPAK+EAVTNWPRPSTVSEIRSFLGLAGYYR
Sbjct: 311 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 370

Query: 121 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSD 180
           RFVEDFSRIASPLTQLTRKGTPFVWSPACE SFQELKQKLVTAPVLTVPDGSG+FVIYSD
Sbjct: 371 RFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSD 430

Query: 181 ASKKGLGCVLMQQGKVVAYASRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 240
           ASKKGLGCVLMQQGKVVAYASRQLK HEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY
Sbjct: 431 ASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 490

Query: 241 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 300
           TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Sbjct: 491 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 550

Query: 301 QTP 304
           QTP
Sbjct: 551 QTP 553

[Close]

BLAST of Cmc03g0066471 vs. ExPASy TrEMBL
Match: A0A5A7V4E4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00400 PE=4 SV=1)

HSP 1 Score: 600.1 bits (1546), Expect = 5.3e-168
Identity = 296/303 (97.69%), Postives = 300/303 (99.01%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHK 60
           MSFGLTNAPAVFMDLMNRVFKDFLD FVIVFIDDILIYSKTEAEHEEHLHQVLETLRA+K
Sbjct: 685 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 744

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKVEAVTNWPRPSTVSEIRSFLGLAGYYR 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVSVDPAK+EAVTNWPRPSTVSEIRSFLGLAGYYR
Sbjct: 745 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 804

Query: 121 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYSD 180
           RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLV APVLTVPDGSG+FVIYSD
Sbjct: 805 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVIAPVLTVPDGSGNFVIYSD 864

Query: 181 ASKKGLGCVLMQQGKVVAYASRQLKNHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 240
           ASKKGLGCVLMQQGKVVAYASRQLK HEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY
Sbjct: 865 ASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 924

Query: 241 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 300
           TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Sbjct: 925 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 984

Query: 301 QTP 304
           QTP
Sbjct: 985 QTP 987

[Close]

BLAST of Cmc03g0066471 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-27
Identity = 58/131 (44.27%), Postives = 81/131 (61.83%), Query Frame = 0


Query: 48  HLHQVLETLRAHKLYAKFSKCEFWLKKVTFLG--HVVSSEGVSVDPAKVEAVTNWPRPST 107
           HL  VL+    H+ YA   KC F   ++ +LG  H++S EGVS DPAK+EA+  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 VSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPV 167
            +E+R FLGL GYYRRFV+++ +I  PLT+L +K +   W+     +F+ LK  + T PV
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

Query: 168 LTVPDGSGSFV 177
           L +PD    FV
Sbjct: 123 LALPDLKLPFV 132

The following BLAST results are available for this feature:

BLAST of Cmc03g0066471 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025917.1	8.9e-170	99.34	pol protein [Cucumis melo var. makuwa] >KAA0042949.1 pol protein [Cucumis melo v...	[more]
KAA0066951.1	2.2e-168	98.02	pol protein [Cucumis melo var. makuwa]	[more]
KAA0054634.1	2.2e-168	98.02	pol protein [Cucumis melo var. makuwa]	[more]
KAA0063793.1	8.3e-168	97.69	pol protein [Cucumis melo var. makuwa]	[more]
KAA0060745.1	1.1e-167	97.69	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0066471 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	2.4e-61	41.03	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	1.6e-57	39.66	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	8.9e-56	36.07	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	6.4e-54	36.30	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P0CT41	5.3e-48	35.67	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc03g0066471 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TP01	4.3e-170	99.34	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold14...	[more]
A0A5A7VMR4	1.1e-168	98.02	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7UHL7	1.1e-168	98.02	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24...	[more]
A0A5A7V6R2	4.0e-168	97.69	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82...	[more]
A0A5A7V4E4	5.3e-168	97.69	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72...	[more]

BLAST of Cmc03g0066471 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.1e-27	44.27	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..81 e-value: 7.0E-16 score: 58.4
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..82 score: 9.42909
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 92..177 e-value: 3.4E-33 score: 115.5
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..87 e-value: 6.4E-35 score: 122.0
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 178..300 e-value: 5.5E-6 score: 28.2
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 173..269 e-value: 3.9E-35 score: 120.3
None	No IPR available	PANTHER	PTHR24559:SF355	PROTEIN, PUTATIVE-RELATED	coord: 92..290
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 92..290
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 1.20627E-39 score: 135.416
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 176..291 e-value: 1.28677E-61 score: 190.011
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..275

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0066471.1	Cmc03g0066471.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding