Cmc03g0064941 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0064941
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr03: 6182248 .. 6182571 (-)
RNA-Seq Expression	Cmc03g0064941
Synteny	Cmc03g0064941

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTTAAGACTACATTTCTTCATGGGTATTTAGATAAAGAAATCTATATGGAACAGCCAAAAGGTTTTGAGCAGAAAGGCAAAGAGCATCTGGTGTGTAAATCGAAGAAAAGTCTTTATGGGTTGAAACAAGCACTGAGACAGTGGTACAAGAAGTTTGAGTCAATTATGGGGGAGCAAGGCTACAGAAAAACTACTTTTGATCACTATGTTTTTGTCCATAATTATTTTGATGATGATTTTGTTATATTATTACTCTATGTTGATGATATTTTGATTATTGGCAGGAATATTTCCAGAATTGATAGCTTGAAGAAATAG

mRNA sequence

ATGGATGTTAAGACTACATTTCTTCATGGGTATTTAGATAAAGAAATCTATATGGAACAGCCAAAAGGTTTTGAGCAGAAAGGCAAAGAGCATCTGGTGTGTAAATCGAAGAAAAGTCTTTATGGGTTGAAACAAGCACTGAGACAGTGGTACAAGAAGTTTGAGTCAATTATGGGGGAGCAAGGCTACAGAAAAACTACTTTTGATCACTATGTTTTTGTCCATAATTATTTTGATGATGATTTTGTTATATTATTACTCTATGTTGATGATATTTTGATTATTGGCAGGAATATTTCCAGAATTGATAGCTTGAAGAAATAG

Coding sequence (CDS)

ATGGATGTTAAGACTACATTTCTTCATGGGTATTTAGATAAAGAAATCTATATGGAACAGCCAAAAGGTTTTGAGCAGAAAGGCAAAGAGCATCTGGTGTGTAAATCGAAGAAAAGTCTTTATGGGTTGAAACAAGCACTGAGACAGTGGTACAAGAAGTTTGAGTCAATTATGGGGGAGCAAGGCTACAGAAAAACTACTTTTGATCACTATGTTTTTGTCCATAATTATTTTGATGATGATTTTGTTATATTATTACTCTATGTTGATGATATTTTGATTATTGGCAGGAATATTTCCAGAATTGATAGCTTGAAGAAATAG

Protein sequence

MDVKTTFLHGYLDKEIYMEQPKGFEQKGKEHLVCKSKKSLYGLKQALRQWYKKFESIMGEQGYRKTTFDHYVFVHNYFDDDFVILLLYVDDILIIGRNISRIDSLKK

Homology

[Close]

BLAST of Cmc03g0064941 vs. NCBI nr
Match: RVW88205.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 180.3 bits (456), Expect = 9.1e-42
Identity = 89/107 (83.18%), Postives = 95/107 (88.79%), Query Frame = 0


Query: 1    MDVKTTFLHGYLDKEIYMEQPKGFEQKGKEHLVCKSKKSLYGLKQALRQWYKKFESIMGE 60
            MDVKT FLHG LDKEIYMEQP+GF  KGKE  VCK KKSLYGLKQA RQWYKKFES+MGE
Sbjct: 917  MDVKTAFLHGDLDKEIYMEQPEGFVLKGKEDYVCKLKKSLYGLKQAPRQWYKKFESVMGE 976

Query: 61   QGYRKTTFDHYVFVHNYFDDDFVILLLYVDDILIIGRNISRIDSLKK 108
            QGYRKTTFDH VFV  + DDDFVILLLYVDDILI+GRN+SRID+LKK
Sbjct: 977  QGYRKTTFDHCVFVQKFSDDDFVILLLYVDDILIVGRNVSRIDNLKK 1023

[Close]

BLAST of Cmc03g0064941 vs. NCBI nr
Match: RVW24680.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 178.3 bits (451), Expect = 3.4e-41
Identity = 89/107 (83.18%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 1   MDVKTTFLHGYLDKEIYMEQPKGFEQKGKEHLVCKSKKSLYGLKQALRQWYKKFESIMGE 60
           MDVKT FLHG LDKEIYMEQP+GF  KGKE  VCK KKSLYGLKQA RQWYKKFES+MGE
Sbjct: 808 MDVKTAFLHGDLDKEIYMEQPEGFVLKGKEDYVCKLKKSLYGLKQAPRQWYKKFESVMGE 867

Query: 61  QGYRKTTFDHYVFVHNYFDDDFVILLLYVDDILIIGRNISRIDSLKK 108
           QGYRKTT DH VFV  + DDDFVILLLYVDDILI+GRN+SRIDSLKK
Sbjct: 868 QGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGRNVSRIDSLKK 914

[Close]

BLAST of Cmc03g0064941 vs. NCBI nr
Match: RVW22327.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 178.3 bits (451), Expect = 3.4e-41
Identity = 89/107 (83.18%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 1   MDVKTTFLHGYLDKEIYMEQPKGFEQKGKEHLVCKSKKSLYGLKQALRQWYKKFESIMGE 60
           MDVKT FLHG LDKEIYMEQP+GF  KGKE  VCK KKSLYGLKQA RQWYKKFES+MGE
Sbjct: 774 MDVKTAFLHGDLDKEIYMEQPEGFVLKGKEDYVCKLKKSLYGLKQAPRQWYKKFESVMGE 833

Query: 61  QGYRKTTFDHYVFVHNYFDDDFVILLLYVDDILIIGRNISRIDSLKK 108
           QGYRKTT DH VFV  + DDDFVILLLYVDDILI+GRN+SRIDSLKK
Sbjct: 834 QGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGRNVSRIDSLKK 880

[Close]

BLAST of Cmc03g0064941 vs. NCBI nr
Match: RVW85908.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 177.2 bits (448), Expect = 7.7e-41
Identity = 88/107 (82.24%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 1    MDVKTTFLHGYLDKEIYMEQPKGFEQKGKEHLVCKSKKSLYGLKQALRQWYKKFESIMGE 60
            MDVKT FLHG LDKEIYMEQP+GF  KGKE  VCK KKSLYGLKQA RQWYKKFES+MGE
Sbjct: 917  MDVKTAFLHGDLDKEIYMEQPEGFVLKGKEDYVCKLKKSLYGLKQAPRQWYKKFESVMGE 976

Query: 61   QGYRKTTFDHYVFVHNYFDDDFVILLLYVDDILIIGRNISRIDSLKK 108
            QGYRKTT DH VFV  + DDDFVILLLYVDDILI+GRN+SRID+LKK
Sbjct: 977  QGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGRNVSRIDNLKK 1023

[Close]

BLAST of Cmc03g0064941 vs. NCBI nr
Match: RVW24009.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 177.2 bits (448), Expect = 7.7e-41
Identity = 88/107 (82.24%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 1   MDVKTTFLHGYLDKEIYMEQPKGFEQKGKEHLVCKSKKSLYGLKQALRQWYKKFESIMGE 60
           MDVKT FLHG LDKEIYMEQP+GF  KGKE  VCK KKSLYGLKQA RQWYKKFES+MGE
Sbjct: 168 MDVKTAFLHGDLDKEIYMEQPEGFVLKGKEDYVCKLKKSLYGLKQAPRQWYKKFESVMGE 227

Query: 61  QGYRKTTFDHYVFVHNYFDDDFVILLLYVDDILIIGRNISRIDSLKK 108
           QGYRKTT DH VFV  + DDDFVILLLYVDDILI+GRN+SRID+LKK
Sbjct: 228 QGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGRNVSRIDNLKK 274

[Close]

BLAST of Cmc03g0064941 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-28
Identity = 63/106 (59.43%), Postives = 80/106 (75.47%), Query Frame = 0


Query: 1    MDVKTTFLHGYLDKEIYMEQPKGFEQKGKEHLVCKSKKSLYGLKQALRQWYKKFESIMGE 60
            +DVKT FLHG L++EIYMEQP+GFE  GK+H+VCK  KSLYGLKQA RQWY KF+S M  
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKS 980

Query: 61   QGYRKTTFDHYVFVHNYFDDDFVILLLYVDDILIIGRNISRIDSLK 107
            Q Y KT  D  V+   + +++F+ILLLYVDD+LI+G++   I  LK
Sbjct: 981  QTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLK 1026

[Close]

BLAST of Cmc03g0064941 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-12
Identity = 41/98 (41.84%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 1    MDVKTTFLHGYLDKEIYMEQPKGFEQKGKEHLVCKSKKSLYGLKQALRQWYKKFESIMGE 60
            +DV   FL G L  ++YM QP GF  K + + VCK +K+LYGLKQA R WY +  + +  
Sbjct: 1064 LDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLT 1123

Query: 61   QGYRKTTFDHYVFVHNYFDDDFVILLLYVDDILIIGRN 99
             G+  +  D  +FV        V +L+YVDDILI G +
Sbjct: 1124 IGFVNSVSDTSLFVLQR-GKSIVYMLVYVDDILITGND 1160

[Close]

BLAST of Cmc03g0064941 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-12
Identity = 40/108 (37.04%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 1    MDVKTTFLHGYLDKEIYMEQPKGFEQKGKEHLVCKSKKSLYGLKQALRQWYKKFESIMGE 60
            MDVKT FL+G L +EIYM  P+G         VCK  K++YGLKQA R W++ FE  + E
Sbjct: 1001 MDVKTAFLNGTLKEEIYMRLPQGISCNSDN--VCKLNKAIYGLKQAARCWFEVFEQALKE 1060

Query: 61   QGYRKTTFDHYVFVHNYFD-DDFVILLLYVDDILIIGRNISRIDSLKK 108
              +  ++ D  +++ +  + ++ + +LLYVDD++I   +++R+++ K+
Sbjct: 1061 CEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKR 1106

[Close]

BLAST of Cmc03g0064941 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.6e-12
Identity = 39/98 (39.80%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 1    MDVKTTFLHGYLDKEIYMEQPKGFEQKGKEHLVCKSKKSLYGLKQALRQWYKKFESIMGE 60
            +DV   FL G L  E+YM QP GF  K +   VC+ +K++YGLKQA R WY +  + +  
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLT 1106

Query: 61   QGYRKTTFDHYVFVHNYFDDDFVILLLYVDDILIIGRN 99
             G+  +  D  +FV        + +L+YVDDILI G +
Sbjct: 1107 VGFVNSISDTSLFVLQR-GRSIIYMLVYVDDILITGND 1143

[Close]

BLAST of Cmc03g0064941 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 2.9e-06
Identity = 31/107 (28.97%), Postives = 57/107 (53.27%), Query Frame = 0


Query: 1   MDVKTTFLHGYLDKEIYMEQPKGFEQKGKEHLVCKSKKSLYGLKQALRQWYKKFESIMGE 60
           MDV T FL+  +D+ IY++QP GF  +     V +    +YGLKQA   W +   + + +
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 61  QGYRKTTFDHYVFVHNYFDDDFVILLLYVDDILIIGRNISRIDSLKK 108
            G+ +   +H ++  +  D   + + +YVDD+L+   +    D +K+
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGP-IYIAVYVDDLLVAAPSPKIYDRVKQ 106

[Close]

BLAST of Cmc03g0064941 vs. ExPASy TrEMBL
Match: A0A438HUT4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_569 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.4e-42
Identity = 89/107 (83.18%), Postives = 95/107 (88.79%), Query Frame = 0


Query: 1    MDVKTTFLHGYLDKEIYMEQPKGFEQKGKEHLVCKSKKSLYGLKQALRQWYKKFESIMGE 60
            MDVKT FLHG LDKEIYMEQP+GF  KGKE  VCK KKSLYGLKQA RQWYKKFES+MGE
Sbjct: 917  MDVKTAFLHGDLDKEIYMEQPEGFVLKGKEDYVCKLKKSLYGLKQAPRQWYKKFESVMGE 976

Query: 61   QGYRKTTFDHYVFVHNYFDDDFVILLLYVDDILIIGRNISRIDSLKK 108
            QGYRKTTFDH VFV  + DDDFVILLLYVDDILI+GRN+SRID+LKK
Sbjct: 977  QGYRKTTFDHCVFVQKFSDDDFVILLLYVDDILIVGRNVSRIDNLKK 1023

[Close]

BLAST of Cmc03g0064941 vs. ExPASy TrEMBL
Match: A0A438CGI4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1683 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41
Identity = 89/107 (83.18%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 1   MDVKTTFLHGYLDKEIYMEQPKGFEQKGKEHLVCKSKKSLYGLKQALRQWYKKFESIMGE 60
           MDVKT FLHG LDKEIYMEQP+GF  KGKE  VCK KKSLYGLKQA RQWYKKFES+MGE
Sbjct: 774 MDVKTAFLHGDLDKEIYMEQPEGFVLKGKEDYVCKLKKSLYGLKQAPRQWYKKFESVMGE 833

Query: 61  QGYRKTTFDHYVFVHNYFDDDFVILLLYVDDILIIGRNISRIDSLKK 108
           QGYRKTT DH VFV  + DDDFVILLLYVDDILI+GRN+SRIDSLKK
Sbjct: 834 QGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGRNVSRIDSLKK 880

[Close]

BLAST of Cmc03g0064941 vs. ExPASy TrEMBL
Match: A0A438CN91 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3654 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41
Identity = 89/107 (83.18%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 1   MDVKTTFLHGYLDKEIYMEQPKGFEQKGKEHLVCKSKKSLYGLKQALRQWYKKFESIMGE 60
           MDVKT FLHG LDKEIYMEQP+GF  KGKE  VCK KKSLYGLKQA RQWYKKFES+MGE
Sbjct: 808 MDVKTAFLHGDLDKEIYMEQPEGFVLKGKEDYVCKLKKSLYGLKQAPRQWYKKFESVMGE 867

Query: 61  QGYRKTTFDHYVFVHNYFDDDFVILLLYVDDILIIGRNISRIDSLKK 108
           QGYRKTT DH VFV  + DDDFVILLLYVDDILI+GRN+SRIDSLKK
Sbjct: 868 QGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGRNVSRIDSLKK 914

[Close]

BLAST of Cmc03g0064941 vs. ExPASy TrEMBL
Match: A0A438HN89 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3233 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.7e-41
Identity = 88/107 (82.24%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 1    MDVKTTFLHGYLDKEIYMEQPKGFEQKGKEHLVCKSKKSLYGLKQALRQWYKKFESIMGE 60
            MDVKT FLHG LDKEIYMEQP+GF  KGKE  VCK KKSLYGLKQA RQWYKKFES+MGE
Sbjct: 917  MDVKTAFLHGDLDKEIYMEQPEGFVLKGKEDYVCKLKKSLYGLKQAPRQWYKKFESVMGE 976

Query: 61   QGYRKTTFDHYVFVHNYFDDDFVILLLYVDDILIIGRNISRIDSLKK 108
            QGYRKTT DH VFV  + DDDFVILLLYVDDILI+GRN+SRID+LKK
Sbjct: 977  QGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGRNVSRIDNLKK 1023

[Close]

BLAST of Cmc03g0064941 vs. ExPASy TrEMBL
Match: A0A438CLF9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2520 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.7e-41
Identity = 88/107 (82.24%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 1   MDVKTTFLHGYLDKEIYMEQPKGFEQKGKEHLVCKSKKSLYGLKQALRQWYKKFESIMGE 60
           MDVKT FLHG LDKEIYMEQP+GF  KGKE  VCK KKSLYGLKQA RQWYKKFES+MGE
Sbjct: 168 MDVKTAFLHGDLDKEIYMEQPEGFVLKGKEDYVCKLKKSLYGLKQAPRQWYKKFESVMGE 227

Query: 61  QGYRKTTFDHYVFVHNYFDDDFVILLLYVDDILIIGRNISRIDSLKK 108
           QGYRKTT DH VFV  + DDDFVILLLYVDDILI+GRN+SRID+LKK
Sbjct: 228 QGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGRNVSRIDNLKK 274

[Close]

BLAST of Cmc03g0064941 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-14
Identity = 45/110 (40.91%), Postives = 66/110 (60.00%), Query Frame = 0


Query: 1   MDVKTTFLHGYLDKEIYMEQPKGFEQKGKEHL----VCKSKKSLYGLKQALRQWYKKFES 60
           +D+   FL+G LD+EIYM+ P G+  +  + L    VC  KKS+YGLKQA RQW+ KF  
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  IMGEQGYRKTTFDHYVFVHNYFDDDFVILLLYVDDILIIGRNISRIDSLK 107
            +   G+ ++  DH  F+       F+ +L+YVDDI+I   N + +D LK
Sbjct: 253 TLIGFGFVQSHSDHTYFL-KITATLFLCVLVYVDDIIICSNNDAAVDELK 301

The following BLAST results are available for this feature:

BLAST of Cmc03g0064941 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW88205.1	9.1e-42	83.18	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW24680.1	3.4e-41	83.18	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW22327.1	3.4e-41	83.18	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW85908.1	7.7e-41	82.24	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW24009.1	7.7e-41	82.24	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Cmc03g0064941 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.2e-28	59.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	1.2e-12	41.84	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	2.0e-12	37.04	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	4.6e-12	39.80	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P25600	2.9e-06	28.97	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc03g0064941 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438HUT4	4.4e-42	83.18	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438CGI4	1.7e-41	83.18	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438CN91	1.7e-41	83.18	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438HN89	3.7e-41	82.24	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438CLF9	3.7e-41	82.24	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of Cmc03g0064941 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.3e-14	40.91	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..107 e-value: 6.6E-28 score: 97.9
None	No IPR available	PANTHER	PTHR11439:SF322	CLASSICAL ARABINOGALACTAN PROTEIN 9-LIKE	coord: 6..103
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 6..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0064941.1	Cmc03g0064941.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding