Cmc03g0061311 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0061311
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr03: 1630983 .. 1631809 (+)
RNA-Seq Expression	Cmc03g0061311
Synteny	Cmc03g0061311

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGTAAGGGAACCTTCTATTCATCTCCAAGATTATCACTATTTTTCCACCATTGTTTCCCTTGTTGAACCTACCTATTAACAAGAGGCTAGTACTGACCCTTTATGGCAGAAAGCGATGAATGATGAATTACAGGCTCTTGAAAAGATGCACACTTGGGACTATGTTGACTTACCTCCTGGTAAAAGACCCATTGGCTGTAAGTGGATCTACAAAATCAAGACTCACTCTGATGGTACTATTGAGAGTTATAAGGCTCGTCTTGTAGCAAAAGGGTATTCCCAAGAATATGGTATTAACTATGAAGAAACATTTGCTCCCGTGGCTCGGATGACGTCTGTTCGAAGTTTATTAGCTGTTGCTGCTGTCAAGCAGTGACCTATTCTTCAGATGGATGTTAAAAATGCTTTTCTTAATGGGACTCTTTCTGAAGAAGTCTATATGAAGCCACCTCCTGGTACTTCTTCTCCTCCTCACAAGGTGTGTCTCTTGCGTCGCGCACTATATGGCCTCTAACAGGCTCCACGAGCTTGGTTTGCCACATTTAGCTATTCCATCACTCAACTTGGTTTTACTTCTAGTTCTCATGATACTGCGCTCTTTACTCACCACACACCCCAGGGTATTGTTCTCCTTCTTCTCTATGTTGATGACATGATTATAACTCGTAATGATCCACAGGCCATATTCGATCTCCAACATTACCTTGGTCAACATTTTGAAATGAAAGACCTTGGATCTCTTAACTACTTTCTTGACCTTGAAGTCTCTCGACGCTCGGACAGGTATTTATTGTCCCAAGCTAAATATGCCTCTGGTCTTTTAGCT

mRNA sequence

GGGTAAGGGAACCTTCTATTCATCTCCAAGATTATCACTATTTTTCCACCATTGTTTCCCTTGTTGAACCTACCTATTAACAAGAGGCTAGTACTGACCCTTTATGGCAGAAAGCGATGAATGATGAATTACAGGCTCTTGAAAAGATGCACACTTGGGACTATGTTGACTTACCTCCTGGTAAAAGACCCATTGGCTGTAAGTGGATCTACAAAATCAAGACTCACTCTGATGGTACTATTGAGAGTTATAAGGCTCGTCTTGTAGCAAAAGGGTATTCCCAAGAATATGGTATTAACTATGAAGAAACATTTGCTCCCGTGGCTCGGATGACGTCTGTTCGAAGTTTATTAGCTGTTGCTGCTGTCAAGCAGTGACCTATTCTTCAGATGGATGTTAAAAATGCTTTTCTTAATGGGACTCTTTCTGAAGAAGTCTATATGAAGCCACCTCCTGGTACTTCTTCTCCTCCTCACAAGGTGTGTCTCTTGCGTCGCGCACTATATGGCCTCTAACAGGCTCCACGAGCTTGGTTTGCCACATTTAGCTATTCCATCACTCAACTTGGTTTTACTTCTAGTTCTCATGATACTGCGCTCTTTACTCACCACACACCCCAGGGTATTGTTCTCCTTCTTCTCTATGTTGATGACATGATTATAACTCGTAATGATCCACAGGCCATATTCGATCTCCAACATTACCTTGGTCAACATTTTGAAATGAAAGACCTTGGATCTCTTAACTACTTTCTTGACCTTGAAGTCTCTCGACGCTCGGACAGGTATTTATTGTCCCAAGCTAAATATGCCTCTGGTCTTTTAGCT

Coding sequence (CDS)

ATGAATGATGAATTACAGGCTCTTGAAAAGATGCACACTTGGGACTATGTTGACTTACCTCCTGGTAAAAGACCCATTGGCTGTAAGTGGATCTACAAAATCAAGACTCACTCTGATGGTACTATTGAGAGTTATAAGGCTCGTCTTGTAGCAAAAGGGTATTCCCAAGAATATGGTATTAACTATGAAGAAACATTTGCTCCCGTGGCTCGGATGACGTCTGTTCGAAGTTTATTAGCTGTTGCTGCTGTCAAGCAGTGA

Protein sequence

MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGINYEETFAPVARMTSVRSLLAVAAVKQ

Homology

[Close]

BLAST of Cmc03g0061311 vs. NCBI nr
Match: TYK19656.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 1.8e-40
Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 1   MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGI 60
           MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIE YKARLVAKGYSQEYGI
Sbjct: 843 MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGI 902

Query: 61  NYEETFAPVARMTSVRSLLAVAAVKQ 87
           +YEETFAPVARMTSVRSLLAVAA KQ
Sbjct: 903 DYEETFAPVARMTSVRSLLAVAAAKQ 928

[Close]

BLAST of Cmc03g0061311 vs. NCBI nr
Match: KAA0056932.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 1.8e-40
Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 1   MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGI 60
           MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIE YKARLVAKGYSQEYGI
Sbjct: 800 MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGI 859

Query: 61  NYEETFAPVARMTSVRSLLAVAAVKQ 87
           +YEETFAPVARMTSVRSLLAVAA KQ
Sbjct: 860 DYEETFAPVARMTSVRSLLAVAAAKQ 885

[Close]

BLAST of Cmc03g0061311 vs. NCBI nr
Match: TYK11630.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 1.8e-40
Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 1   MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGI 60
           MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIE YKARLVAKGYSQEYGI
Sbjct: 333 MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGI 392

Query: 61  NYEETFAPVARMTSVRSLLAVAAVKQ 87
           +YEETFAPVARMTSVRSLLAVAA KQ
Sbjct: 393 DYEETFAPVARMTSVRSLLAVAAAKQ 418

[Close]

BLAST of Cmc03g0061311 vs. NCBI nr
Match: KAA0037745.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 1.8e-40
Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 1   MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGI 60
           MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIE YKARLVAKGYSQEYGI
Sbjct: 843 MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGI 902

Query: 61  NYEETFAPVARMTSVRSLLAVAAVKQ 87
           +YEETFAPVARMTSVRSLLAVAA KQ
Sbjct: 903 DYEETFAPVARMTSVRSLLAVAAAKQ 928

[Close]

BLAST of Cmc03g0061311 vs. NCBI nr
Match: TYK26360.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 1.8e-40
Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 1   MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGI 60
           MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIE YKARLVAKGYSQEYGI
Sbjct: 843 MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGI 902

Query: 61  NYEETFAPVARMTSVRSLLAVAAVKQ 87
           +YEETFAPVARMTSVRSLLAVAA KQ
Sbjct: 903 DYEETFAPVARMTSVRSLLAVAAAKQ 928

[Close]

BLAST of Cmc03g0061311 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-19
Identity = 40/83 (48.19%), Postives = 64/83 (77.11%), Query Frame = 0


Query: 1   MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGI 60
           M +E+++L+K  T+  V+LP GKRP+ CKW++K+K   D  +  YKARLV KG+ Q+ GI
Sbjct: 830 MQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGI 889

Query: 61  NYEETFAPVARMTSVRSLLAVAA 84
           +++E F+PV +MTS+R++L++AA
Sbjct: 890 DFDEIFSPVVKMTSIRTILSLAA 912

[Close]

BLAST of Cmc03g0061311 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.4e-18
Identity = 41/82 (50.00%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 1   MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGI 60
           M +EL AL +  TW  V  P  +  +GCKW++K K HSDGT++  KARLVAKG+ QE GI
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103

Query: 61  NYEETFAPVARMTSVRSLLAVA 83
            + ET++PV R  ++R++L VA
Sbjct: 104 YFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc03g0061311 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.9e-17
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 1    MNDELQALEKMHTWDYVDLPPGKRPI-GCKWIYKIKTHSDGTIESYKARLVAKGYSQEYG 60
            M  E+ A    HTWD V  PP    I GC+WI+  K +SDG++  YKARLVAKGY+Q  G
Sbjct: 972  MGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPG 1031

Query: 61   INYEETFAPVARMTSVRSLLAVA 83
            ++Y ETF+PV + TS+R +L VA
Sbjct: 1032 LDYAETFSPVIKSTSIRIVLGVA 1054

[Close]

BLAST of Cmc03g0061311 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.8e-17
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 1    MNDELQALEKMHTWDYVDLPPGKRPI-GCKWIYKIKTHSDGTIESYKARLVAKGYSQEYG 60
            M  E+ A    HTWD V  PP    I GC+WI+  K +SDG++  YKARLVAKGY+Q  G
Sbjct: 955  MGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPG 1014

Query: 61   INYEETFAPVARMTSVRSLLAVA 83
            ++Y ETF+PV + TS+R +L VA
Sbjct: 1015 LDYAETFSPVIKSTSIRIVLGVA 1037

[Close]

BLAST of Cmc03g0061311 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-13
Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 1   MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGI 60
           +N EL A +  +TW     P  K  +  +W++ +K +  G    YKARLVA+G++Q+Y I
Sbjct: 910 INTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQI 969

Query: 61  NYEETFAPVARMTSVRSLLAV 82
           +YEETFAPVAR++S R +L++
Sbjct: 970 DYEETFAPVARISSFRFILSL 990

[Close]

BLAST of Cmc03g0061311 vs. ExPASy TrEMBL
Match: A0A5A7VIT8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00050 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 8.7e-41
Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 1   MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGI 60
           MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIE YKARLVAKGYSQEYGI
Sbjct: 843 MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGI 902

Query: 61  NYEETFAPVARMTSVRSLLAVAAVKQ 87
           +YEETFAPVARMTSVRSLLAVAA KQ
Sbjct: 903 DYEETFAPVARMTSVRSLLAVAAAKQ 928

[Close]

BLAST of Cmc03g0061311 vs. ExPASy TrEMBL
Match: A0A5D3E0Q6 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold64G00050 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 8.7e-41
Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 1   MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGI 60
           MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIE YKARLVAKGYSQEYGI
Sbjct: 424 MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGI 483

Query: 61  NYEETFAPVARMTSVRSLLAVAAVKQ 87
           +YEETFAPVARMTSVRSLLAVAA KQ
Sbjct: 484 DYEETFAPVARMTSVRSLLAVAAAKQ 509

[Close]

BLAST of Cmc03g0061311 vs. ExPASy TrEMBL
Match: A0A5D3D7V8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00480 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 8.7e-41
Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 1   MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGI 60
           MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIE YKARLVAKGYSQEYGI
Sbjct: 843 MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGI 902

Query: 61  NYEETFAPVARMTSVRSLLAVAAVKQ 87
           +YEETFAPVARMTSVRSLLAVAA KQ
Sbjct: 903 DYEETFAPVARMTSVRSLLAVAAAKQ 928

[Close]

BLAST of Cmc03g0061311 vs. ExPASy TrEMBL
Match: A0A5A7T8F2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold141G00410 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 8.7e-41
Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 1   MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGI 60
           MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIE YKARLVAKGYSQEYGI
Sbjct: 843 MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGI 902

Query: 61  NYEETFAPVARMTSVRSLLAVAAVKQ 87
           +YEETFAPVARMTSVRSLLAVAA KQ
Sbjct: 903 DYEETFAPVARMTSVRSLLAVAAAKQ 928

[Close]

BLAST of Cmc03g0061311 vs. ExPASy TrEMBL
Match: A0A5A7UM60 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G001060 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 8.7e-41
Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 1   MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGI 60
           MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIE YKARLVAKGYSQEYGI
Sbjct: 800 MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGI 859

Query: 61  NYEETFAPVARMTSVRSLLAVAAVKQ 87
           +YEETFAPVARMTSVRSLLAVAA KQ
Sbjct: 860 DYEETFAPVARMTSVRSLLAVAAAKQ 885

[Close]

BLAST of Cmc03g0061311 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 122.1 bits (305), Expect = 2.2e-28
Identity = 52/84 (61.90%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1   MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGI 60
           M+DE+ A+E  HTW+   LPP K+PIGCKW+YKIK +SDGTIE YKARLVAKGY+Q+ GI
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGI 161

Query: 61  NYEETFAPVARMTSVRSLLAVAAV 85
           ++ ETF+PV ++TSV+ +LA++A+
Sbjct: 162 DFIETFSPVCKLTSVKLILAISAI 185

[Close]

BLAST of Cmc03g0061311 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 92.0 bits (227), Expect = 2.4e-19
Identity = 41/82 (50.00%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 1   MNDELQALEKMHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIESYKARLVAKGYSQEYGI 60
           M +EL AL +  TW  V  P  +  +GCKW++K K HSDGT++  KARLVAKG+ QE GI
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103

Query: 61  NYEETFAPVARMTSVRSLLAVA 83
            + ET++PV R  ++R++L VA
Sbjct: 104 YFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc03g0061311 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK19656.1	1.8e-40	96.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0056932.1	1.8e-40	96.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK11630.1	1.8e-40	96.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0037745.1	1.8e-40	96.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK26360.1	1.8e-40	96.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc03g0061311 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.1e-19	48.19	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P92520	3.4e-18	50.00	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q94HW2	2.9e-17	51.81	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	3.8e-17	51.81	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	1.1e-13	43.21	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Cmc03g0061311 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VIT8	8.7e-41	96.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3E0Q6	8.7e-41	96.51	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3D7V8	8.7e-41	96.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7T8F2	8.7e-41	96.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UM60	8.7e-41	96.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc03g0061311 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.2e-28	61.90	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	2.4e-19	50.00	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 12..85 e-value: 5.1E-22 score: 78.7
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 20..83
None	No IPR available	PANTHER	PTHR11439:SF302	REVERSE TRANSCRIPTASE, RNA-DEPENDENT DNA POLYMERASE-RELATED	coord: 20..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0061311.1	Cmc03g0061311.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding