Cmc03g0060531 (gene) Melon (Charmono) v1.1

Overview
NameCmc03g0060531
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionMitochondrial transcription termination factor family protein isoform 2
LocationCMiso1.1chr03: 808493 .. 815220 (+)
RNA-Seq ExpressionCmc03g0060531
SyntenyCmc03g0060531
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCAGAGTTCTCCATTAGATTTACTATTGTCTTTTGATTCATCCACAAATAAGGTATTCAATGTTGTCTTGGTATGCAATAAATAGAGAGAGTATATAAAAAGAAAGGAGGGGGTTATGTTATTGTTATGTGGCTTTAGGCTACAAGCAAAGGACAAGAAGATTGGTGTCGTAGTGTGAGCTACTCTGTGGTTCGCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTCTTCTTCTTCTTTTCTTCAACCTCCGCCTTACAATCCAAACTCTAAATGAGCTATTCACTTTCAATCCCTCAAATTTCAGGTACAATTTCTTCCAATTTCATCTCCATAATCTGTCTGCATTTCTTTCAATAAATTTGCTTCTGCTCGAATCCTTGTTTCGTTTTGTATAACGTACCACCTTCTCTTTATTGGACTTACTTAACTGTTCCTTTTTCGCATTCGGTTTTGATCGGAATTCAATTCAATTAAGACAATATTCATATATATGCCCCCTTTACCTTCTGATCCTATTCTCAACAACCAATTCAACTTTGTACCTATATACTGCTGATACTACCTTACTGAAGATGATATCATATGATTCACTTCTGATGGATGAGAAAGACATTGGTTAAAATTTTTGCTGAATGATATAGTAAACAACGTAGTGTTTGCATTGTTTGGAAGATCATGTCAGGTTGTGCAGTAACTTCTTTTTAATACGCTGGAGTATTCGCCATTAGTTAAACGATATCTTGACCATGGGATAAACCCTAGATCGGTTATCTTCTCTTGTATGAACGTAAGTAATAAGAAATTAGTCAAGCTAAAATAATTATAATAATAATCATGCATAGTAATTTTCAAATGAAAATTCTCACTAAGGTGGAGAGTAAAATACCACGGATTGAAGTCGAATTCTCCATAATGGGCTACAATGATTTTCCCTAGTCTCATGAGTAAACCTGGTTCTTTGTGTGAATGACCCATGAATGTGATTGAACTCAATCCCAAAAGTCAATGACTGCATATCAAATCTCCTCTAAGAGGATCTCAGATTCTCAACCACTTTTGCTTCACTCTTCATGTACTTGTGTTTTTTTCTCCATGAATCTTTTGAAAGCTGGCTCTAACCAAACTTCTTAATATGGTACAGGGATGCTAGGAAAGTCGTTGGCATCCCCTATATCAACCATTGATTCTGCTACTCGTTTCTGCTGTTCTACTGTGAGTAGCAAATTTTGCCTCTTATCGTTTAATGCTATGGGAATAACACATCATAATAGAGGAAATATTTGGTGCAAATACAGTCCCATGTTGGGAAGAGAAAGAACCATGATATACTAGTAAGGTTATCTTTATTAATACGAGGTCTTTTAGGTGATTCCAACAATCACACCATTGAGGAGATATGTGAAGGTTCAATAGTTTTCATTTTTCTTTTTTCTTTTTTCTTTTTTCTTTTTTCTTTTTTTTGCAGGAGTGCAATGGGAAATGAGGAAATAATTGTTATATCGTTTACTTCATACTTGTACTGTTTTGCATTGCTCAAATAATGGTTTTATAATTTCTCTTTTTTAGGATTTTGTAACTTATTCTTAATTCTCAATGCAGCGCTGCACTGCCACAGCCATATCAGATGCTGTATGTTCAAATGTGAGTTTCTCCTATTATCCTGCAAAGCATACGATAAAGGGTGTGAGAAGACAAAATCCCTATCCTAGGAAGTGGGAAGTCTGTTCATCTACTCAAGTTGAAAGCTTAATATTAAGTGATGAAGATAAGAAGACATGGGAAGCTTGTCGGCAAGCTCTGTCTGTGTTCAGCTTCAGTGTTGAGGAGCAAGATAAGATGCTTGGAAAGGCGTTCGGCCACATTCATTCACCCTACTGGGGTGAAGACAGAAAGAAGAAAGTTCCTAATATTGAAATTGTAAATGATATACTGGAATATCTGAGGACGACACTTGGCCTTTCTAATGACGATCTCTCTAAGCTGCTAAAGAAATTCCCGGAAGTTCTTGGCTGCAATCTTGAGCGGGAGCTGAAAACCAACGTACAATTGTTGGACAAAGAGTGGGGAATTCAAGGCAAATCACTAAGGAATCTTCTTCTGCGTAATCCCAAGGTACTGGGCTATTATGTTGATTGTAAAGGAGACTGCATAGCAAAATGCACCAGATGCTGGGTTCGATTCTAGGTACATTTTCTTTTCAGAATTTCTTATGTTGACTAATGATATTGAACTATAGCCACAGCGCTGTATTCATGCATATTAAATTGTAAGAATTAAGAATATAAACGGTCAAACCTTGTAAAACAATTCAATGTTCAGAGAAAGATCTTCTTCAACTAAACACATAAGAGTTCTAAATTGTGAAATGGGAAGCAAGACTATTGAATATGTTTACCAATGGAGACTATCACTCGTACTTTCTATTTATAAATTCTTCATTAGACCCCACTAATTCTAGTAAGAGTTATTGAGTACGTACTTAGTAAAACTCTATACTCCATGATAGTTTACGGACCTATTTAATTATAGGTTCTTCAAGTAACCCATTTAAATAGCCAACTAATATAAGTAACCAAACACATCTTGATCATCAGAAATTAATTACTTACTCGTTCTAACTTCATATACATTAAGCTACACATTTGATGTCTTCCTAAATCATGTCTGAATTACCGATTTTCAGTTATTTGGACCATTGTTTTCATGTTCATAAATGCGTAACCTGTTCACCTCCTGTTCTCTCTCATTTGTATATTCTTTTAACATAAAATTATCGGAGTTTTATCTGTATGCCTTGAACTGTTGAGAGCATATTTGGAAATAGAGAGCCACTATCTGTGTTTTATTGAGTCTTGGTTCAATTCATCTATGGAAAAATAGCTTCCATACTTTAAACATTTTCTAAAGAGTAAGTTTGGGGAAAACAATTGTCCATTCTTGTAAACTAAAAAACAAACAAGTTCCTATACTATAGTGGCTTATAACATAGGTTAACTGAATTTTTGTTATTGTAAATGAAGTTGTTTCTTTTACAAAACAACTCACCACACAAGTCACCACATAAAACTTCTAATTGAGTTCGATTTGAGTAATAGCTTGGTGCATAAAGTTTGCTTAGTAGATATAAGTTACAATATTCTTTATGCCCTTTGTGCTTTTCTTTTTTTAATGGAAAAGTAATATTAGAATAAGAATGTTCCTTTTACATATATGTTTTACAAAGAACCATATGAAACTATTAAATTCCGCGTTTATGCACTAAAAACATGATATCAACCCTTCTTTTGAGCAAAAGTTTATGCACTAGTTTAATATTTTTTATTTAATTCCACGTTTATGCACTAATTTCATTTTTTGTATTTCGAACATTAGTCTGGTTTCATTTCATCAATCAAAAATTTTGTTTAAAAGAAAAAGTGTTTGTGCAAAGGCAACATCTTAGTGACTTCGGGAAGTAGCATCTTCTTTTCTACCCGTCTCTAAATGGGCTGCCTAAATGCAACAAAATTCTTGATTTGTCTTTTTACTTTTACACATACACAATGTATGTTCTCTCCATTAAAAGCATATTCTAAATCAATTTTCCTTACTTCTTATCAATTATTTGTGATATCATTCTCTTTTGCTTCATCATCTTGTTCTTTTATTTCTTTTGCAGAGCTATAATGGTTCTCAATCTATGGTTGAATATTCCCAAAAGATAGGTATGCTTCTAACTAAATTTATATCAATTGAATATTTTGTTAAAGAATATTCAGAAGTATGTGCGAATATTAAAAGGACCCCGAAGGAAAAATGGGAGTATAGATGCGGCAAGGCTTCAAGAAGCTGAATATTTGCATAAGAGATGGGGAGATGGCTGCCAAAGATCACTTAAATATATTATCAATTAGAAAATTGGTCCTTATGGAAAAAAATACAGCACTGATTTTTATTCCAATTGTAAGCAACACAAGCCACTTAGATATAGTACAACAGAGGTGGGAAAATCAACATAATCAAAAAGAGAGAATGCAAGAGAAACCCTTGGCTTCAATATATTGATAGGTAAATAACACCAATCCTATATAGTTGGCCTGGGAGGAAAACTCTTGCAAAATACACTCACCCACAATAAATTATCATCATTAACAGAAGGAATCCTTCTAGAAGAATTCCATAACATAATGAATTTTGAGAAGGAAATCAAGATACTCAAACCCAAAATCCAATTAAGGCTAATGAGTTGTCTTAACTGGAAGGTTGAAACATCTTGATCAATAACACATTTATATGCCAGATGAGCAATGCTCACCTTGGCATTTTTATACACATTAATAGTATATAAACATAAATGGAAAATACAAAGAATTAAATGACCTCCAATATATAAAAGGAAATAGTGTAGAAGTAGGGTTGGAAGAGTAGAGTGGAAATTAGGGGCACTTGGGCTTATTGCCATGGGTCCTGAGGCGAGCATAGCAAGGGCAAGCTTGGTGGTTGCCGTAAGTGCCGGGCGGGACGCAGTGACACCGACTGCAGCAAGTCCCACAAGCACGCATACATATCTTCTTTCTGAACACTTTGCTGCATCTCCTTGAACATTCACTTTTGCAATCTACCCCAAACCAATTCAACCCAACCTGATTGTTAATTTCACTCCAAATTTTGTGTTATAAGTTTCTTTATATAAAAAAAGAAAAAAAAATGTTCTGTTACGTGTTTAGTTTTTAAAATCTCCGTTGGGTGACTATTTTGTTCTTGACGTTTATGCTTGTTTTCTCCTAAATTGCTTACGGTTATTTTCAGATTTCTTCAAGAACCACTTGAAACTTTTGTCAAATTGTATGAATGAAAAGAAGTTTTTGAAAACTATAGTTCCGTTTTGTAATTTTTTGTTTTTTGAAAATTAAGCATATAAACAATACCCATTTTGCACCAATTTTTATTGTTTTGTTATCTATTTTATATTAAGGTTTTTGAAAATCGCGTTCGATAACCATTTGGTTTTTGTTTTTTTTTTTTTTAAATATGACTACAAATTAAAAGTTTAATGTTCTATTAGATACAAAATTCACTCTCCGTAGAATTGCTAATTTAAAAATTACAATTTCAAGGATGCAGAAAACAATAATTTATACCTATATTAATCGAAAGTTTAAAGACTTATTTGACCGTCCTAAAATTTAAATAGGTTATACCTATATTAATTGAAAGTTTAAAGACCTATTTGACTAACTTACGATTTGAAAACCTATTCTAACACTCATTTAAGTTGAAAGAATAAATTTGTAATTCTCTATATGTATTATTACTATTATTATATTTTATGGCAACTTACTGATTTTTGGCTGATAGTGATACTTTTTGCTGAGTGCTACTGTATTGGTCCCTGCATCCACCTGAATCCAATATAATGTCAGTATTCATATGATTGTTATAATTATTTTCATTCACCTAACTTTTTGTTTTCCTAATTATTTAGGACATGTTATCATGACTTTAGCTTAATTAGTTAAGGTTGAGAACTAGGCTTAGAAATCCCATATATTCTTCTTTAACTCTTCATTTGTTCAAACTATGTTTATATGCTCATCATTTTTCTTATATATTAAGCCGAAATTGTATCTCGTTCCTTGATACTCTTGCGATGTTAAACCCTACTCGACCAAATTAATTTCAATGATTAAGGGGTATGTAGAGTAGAGTTATTAAAGTTTGTGAAGTATAATAGTTTATAGATCGTAATTGTTCGTGTTTGGGTATAAACTATTTTAGTCTCGTAAAATTGTATGTGCTTGAGGTGTATATTATTTTAGTCTGGGTAAATATAGTAAATACTGTAAAAAATAGTTAGTAATGTAGCAAATAGGGTTTCAAAATACTGATGTTATAGTCAATTGTAAAATATGATATATAGTTTAAAACGACAAGTTAATTAGAGCCGAGTGAGGTAGTCCACTCCAATAACTTTTAAGAGATTAGAATAACAAGTTGGAGTTGTTAAGTGGTGGTTGTTTCCAACAATTATTAGATATAATAAGCCTTAACAATAATCTCAAAATTTCAATTCAATGGATTGCAAAACATAGAAAAGGTAATGATGGAAAGGTAAAAAGTAAAGTAAGAGATATATAATATGGATGGTGAACACTCACAGTAGTGATAGCCTCTGAAAAACCCTACAACAAAATGCATAAAAGAATTAAATTCATTAAATGAAATTTGTTAAATAAAAATGTAAACATGTAAAAAATATATATACATAAAAATAGAAATATTACCTGCAGGAGAAAGGAAAGAATAATGAAAATGCAAAGAAGACTGAGTGGCTTCATTTCTCTAAAAGGATATGTCTGAAAAGATAATTTGATTGATGAACTCAGGTGGCGAAGATGGTGGGATATATATAGGTGCAATGCCTCTCCAATGTATATGGGTTTTTCTTTTTCCATCTCAAGACAAAAACGAGTAAAATTACATATTTGTCCTTTAATTTACATATATTATTTGTTTTTTTTTTTTTTTTTTAATTTTTATTGTCTTCTTCCTGCCATTAAGTGTTAAAAGGGAAGAGAGAAAAAAAAAAGGTCATCCAAGCAAAGTTTTGTTCCTTTTAACTTTATGCCAATCGTATCACTTTTCCACATTCTCATGCATACAATTCAAAGGCTTGTTTACAAGGTGGAGTGGTTCAAAAGAAACACCTCTCTCACAAAAACTCTAAGCTCGTCTTCATCCTT

mRNA sequence

CTCAGAGTTCTCCATTAGATTTACTATTGTCTTTTGATTCATCCACAAATAAGGTATTCAATGTTGTCTTGGTATGCAATAAATAGAGAGAGTATATAAAAAGAAAGGAGGGGGTTATGTTATTGTTATGTGGCTTTAGGCTACAAGCAAAGGACAAGAAGATTGGTGTCGTAGTGTGAGCTACTCTGTGGTTCGCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTCTTCTTCTTCTTTTCTTCAACCTCCGCCTTACAATCCAAACTCTAAATGAGCTATTCACTTTCAATCCCTCAAATTTCAGGGATGCTAGGAAAGTCGTTGGCATCCCCTATATCAACCATTGATTCTGCTACTCGTTTCTGCTGTTCTACTCGCTGCACTGCCACAGCCATATCAGATGCTGTATGTTCAAATGTGAGTTTCTCCTATTATCCTGCAAAGCATACGATAAAGGGTGTGAGAAGACAAAATCCCTATCCTAGGAAGTGGGAAGTCTGTTCATCTACTCAAGTTGAAAGCTTAATATTAAGTGATGAAGATAAGAAGACATGGGAAGCTTGTCGGCAAGCTCTGTCTGTGTTCAGCTTCAGTGTTGAGGAGCAAGATAAGATGCTTGGAAAGGCGTTCGGCCACATTCATTCACCCTACTGGGGTGAAGACAGAAAGAAGAAAGTTCCTAATATTGAAATTGTAAATGATATACTGGAATATCTGAGGACGACACTTGGCCTTTCTAATGACGATCTCTCTAAGCTGCTAAAGAAATTCCCGGAAGTTCTTGGCTGCAATCTTGAGCGGGAGCTGAAAACCAACGTACAATTGTTGGACAAAGAGTGGGGAATTCAAGGCAAATCACTAAGGAATCTTCTTCTGCGTAATCCCAAGGTACTGGGCTATTATGTTGATTGTAAAGGAGACTGCATAGCAAAATGCACCAGATGCTGGAGCTATAATGGTTCTCAATCTATGGTTGAATATTCCCAAAAGATAGGTGGCGAAGATGGTGGGATATATATAGGTGCAATGCCTCTCCAATGTATATGGGTTTTTCTTTTTCCATCTCAAGACAAAAACGAGTAAAATTACATATTTGTCCTTTAATTTACATATATTATTTGTTTTTTTTTTTTTTTTTTAATTTTTATTGTCTTCTTCCTGCCATTAAGTGTTAAAAGGGAAGAGAGAAAAAAAAAAGGTCATCCAAGCAAAGTTTTGTTCCTTTTAACTTTATGCCAATCGTATCACTTTTCCACATTCTCATGCATACAATTCAAAGGCTTGTTTACAAGGTGGAGTGGTTCAAAAGAAACACCTCTCTCACAAAAACTCTAAGCTCGTCTTCATCCTT

Coding sequence (CDS)

ATGAGCTATTCACTTTCAATCCCTCAAATTTCAGGGATGCTAGGAAAGTCGTTGGCATCCCCTATATCAACCATTGATTCTGCTACTCGTTTCTGCTGTTCTACTCGCTGCACTGCCACAGCCATATCAGATGCTGTATGTTCAAATGTGAGTTTCTCCTATTATCCTGCAAAGCATACGATAAAGGGTGTGAGAAGACAAAATCCCTATCCTAGGAAGTGGGAAGTCTGTTCATCTACTCAAGTTGAAAGCTTAATATTAAGTGATGAAGATAAGAAGACATGGGAAGCTTGTCGGCAAGCTCTGTCTGTGTTCAGCTTCAGTGTTGAGGAGCAAGATAAGATGCTTGGAAAGGCGTTCGGCCACATTCATTCACCCTACTGGGGTGAAGACAGAAAGAAGAAAGTTCCTAATATTGAAATTGTAAATGATATACTGGAATATCTGAGGACGACACTTGGCCTTTCTAATGACGATCTCTCTAAGCTGCTAAAGAAATTCCCGGAAGTTCTTGGCTGCAATCTTGAGCGGGAGCTGAAAACCAACGTACAATTGTTGGACAAAGAGTGGGGAATTCAAGGCAAATCACTAAGGAATCTTCTTCTGCGTAATCCCAAGGTACTGGGCTATTATGTTGATTGTAAAGGAGACTGCATAGCAAAATGCACCAGATGCTGGAGCTATAATGGTTCTCAATCTATGGTTGAATATTCCCAAAAGATAGGTGGCGAAGATGGTGGGATATATATAGGTGCAATGCCTCTCCAATGTATATGGGTTTTTCTTTTTCCATCTCAAGACAAAAACGAGTAA

Protein sequence

MSYSLSIPQISGMLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYYPAKHTIKGVRRQNPYPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDRKKKVPNIEIVNDILEYLRTTLGLSNDDLSKLLKKFPEVLGCNLERELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWSYNGSQSMVEYSQKIGGEDGGIYIGAMPLQCIWVFLFPSQDKNE
Homology
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BLAST of Cmc03g0060531 vs. NCBI nr
Match: XP_008441218.1 (PREDICTED: uncharacterized protein LOC103485418 [Cucumis melo] >XP_008441219.1 PREDICTED: uncharacterized protein LOC103485418 [Cucumis melo] >XP_008441220.1 PREDICTED: uncharacterized protein LOC103485418 [Cucumis melo])

HSP 1 Score: 434.5 bits (1116), Expect = 6.7e-118
Identity = 211/214 (98.60%), Postives = 213/214 (99.53%), Query Frame = 0 

Query: 13  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYYPAKHTIKGVRRQNPYPR 72
           MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSY+PAKHTIKGVRRQNPYPR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPR 60

Query: 73  KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 132
           KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 133 KKKVPNIEIVNDILEYLRTTLGLSNDDLSKLLKKFPEVLGCNLERELKTNVQLLDKEWGI 192
           KKKVPNIEIVNDILEYLR TLGLSNDDLSKLLKKFPEVLGCNLE+ELKTNVQLLDKEWGI
Sbjct: 121 KKKVPNIEIVNDILEYLR-TLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGI 180

Query: 193 QGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCW 227
           QGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCW
Sbjct: 181 QGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCW 213

[Close]
BLAST of Cmc03g0060531 vs. NCBI nr
Match: XP_011649898.1 (uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus] >XP_011649900.1 uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus] >XP_031737008.1 uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus] >XP_031737009.1 uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus] >KAE8652244.1 hypothetical protein Csa_021907 [Cucumis sativus])

HSP 1 Score: 426.8 bits (1096), Expect = 1.4e-115
Identity = 207/217 (95.39%), Postives = 214/217 (98.62%), Query Frame = 0 

Query: 10  ISGMLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYYPAKHTIKGVRRQNP 69
           ++GMLGKSLASPISTIDSATRFCCSTRCTATAISDAVCS+VSFS + AKHTIKGVRRQNP
Sbjct: 1   MNGMLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNP 60

Query: 70  YPRKWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWG 129
           YPRKWE+CSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWG
Sbjct: 61  YPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWG 120

Query: 130 EDRKKKVPNIEIVNDILEYLRTTLGLSNDDLSKLLKKFPEVLGCNLERELKTNVQLLDKE 189
           EDR+KKVPNIEIVNDILEYLR TLGLSNDDLSKLLKKFPEVLGCNLE+ELKTNVQLLDKE
Sbjct: 121 EDREKKVPNIEIVNDILEYLR-TLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKE 180

Query: 190 WGIQGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCW 227
           WGIQGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCW
Sbjct: 181 WGIQGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCW 216

[Close]
BLAST of Cmc03g0060531 vs. NCBI nr
Match: XP_004138649.1 (uncharacterized protein LOC101218603 isoform X2 [Cucumis sativus] >XP_031737011.1 uncharacterized protein LOC101218603 isoform X2 [Cucumis sativus])

HSP 1 Score: 424.1 bits (1089), Expect = 9.1e-115
Identity = 206/214 (96.26%), Postives = 211/214 (98.60%), Query Frame = 0 

Query: 13  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYYPAKHTIKGVRRQNPYPR 72
           MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCS+VSFS + AKHTIKGVRRQNPYPR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 60

Query: 73  KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 132
           KWE+CSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 133 KKKVPNIEIVNDILEYLRTTLGLSNDDLSKLLKKFPEVLGCNLERELKTNVQLLDKEWGI 192
           +KKVPNIEIVNDILEYLR TLGLSNDDLSKLLKKFPEVLGCNLE+ELKTNVQLLDKEWGI
Sbjct: 121 EKKVPNIEIVNDILEYLR-TLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGI 180

Query: 193 QGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCW 227
           QGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCW
Sbjct: 181 QGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCW 213

[Close]
BLAST of Cmc03g0060531 vs. NCBI nr
Match: KAA0037010.1 (Mitochondrial transcription termination factor family protein isoform 2 [Cucumis melo var. makuwa] >TYK06641.1 Mitochondrial transcription termination factor family protein isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 405.6 bits (1041), Expect = 3.3e-109
Identity = 207/230 (90.00%), Postives = 209/230 (90.87%), Query Frame = 0 

Query: 13  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYYPAKHTIKGVRRQNPYPR 72
           MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSY+PAKHTIKGVRRQNPYPR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPR 60

Query: 73  KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 132
           KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 133 KKKVPNIEIVNDILEYLRTTLGLSNDDLSKLLKKFPEVLGCNLERELKTNVQLLDKEWGI 192
           KKKVPNIEIVNDILEYLR TLGLSNDDLSKLLKKFPEVLGCNLE+ELKTNVQLLDKEWGI
Sbjct: 121 KKKVPNIEIVNDILEYLR-TLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGI 180

Query: 193 QGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWSYNGSQSMVEYSQKIG 243
           QGKSLRNLLLRNPK                    SYNGSQSMVEYSQKIG
Sbjct: 181 QGKSLRNLLLRNPK--------------------SYNGSQSMVEYSQKIG 209

[Close]
BLAST of Cmc03g0060531 vs. NCBI nr
Match: XP_038885056.1 (uncharacterized protein LOC120075592 [Benincasa hispida] >XP_038885057.1 uncharacterized protein LOC120075592 [Benincasa hispida])

HSP 1 Score: 397.1 bits (1019), Expect = 1.2e-106
Identity = 194/214 (90.65%), Postives = 200/214 (93.46%), Query Frame = 0 

Query: 13  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYYPAKHTIKGVRRQNPYPR 72
           MLGKSL SPISTIDSATRFCCSTR  ATAISDA  SNVSFSY+PAKH IK VRRQ PYP 
Sbjct: 1   MLGKSLVSPISTIDSATRFCCSTRSIATAISDAARSNVSFSYHPAKHMIKDVRRQTPYPS 60

Query: 73  KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 132
           KWE+CS+TQVESL LSDED+KTWEACRQALSVFSFSVEEQDKMLGKAF HIHSPYWGEDR
Sbjct: 61  KWEICSTTQVESLTLSDEDRKTWEACRQALSVFSFSVEEQDKMLGKAFSHIHSPYWGEDR 120

Query: 133 KKKVPNIEIVNDILEYLRTTLGLSNDDLSKLLKKFPEVLGCNLERELKTNVQLLDKEWGI 192
           KK+VPNIE VNDILEYLR TLGLSNDDLSKLLKKFPEVLGCNLE+ELKTNVQLLDKEWGI
Sbjct: 121 KKEVPNIETVNDILEYLR-TLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGI 180

Query: 193 QGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCW 227
           QGKSLRNLLLRNPKVLGY VDCKGDCIAKCTRCW
Sbjct: 181 QGKSLRNLLLRNPKVLGYNVDCKGDCIAKCTRCW 213

[Close]
BLAST of Cmc03g0060531 vs. ExPASy TrEMBL
Match: A0A1S3B2X0 (uncharacterized protein LOC103485418 OS=Cucumis melo OX=3656 GN=LOC103485418 PE=3 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 3.3e-118
Identity = 211/214 (98.60%), Postives = 213/214 (99.53%), Query Frame = 0 

Query: 13  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYYPAKHTIKGVRRQNPYPR 72
           MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSY+PAKHTIKGVRRQNPYPR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPR 60

Query: 73  KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 132
           KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 133 KKKVPNIEIVNDILEYLRTTLGLSNDDLSKLLKKFPEVLGCNLERELKTNVQLLDKEWGI 192
           KKKVPNIEIVNDILEYLR TLGLSNDDLSKLLKKFPEVLGCNLE+ELKTNVQLLDKEWGI
Sbjct: 121 KKKVPNIEIVNDILEYLR-TLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGI 180

Query: 193 QGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCW 227
           QGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCW
Sbjct: 181 QGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCW 213

[Close]
BLAST of Cmc03g0060531 vs. ExPASy TrEMBL
Match: A0A0A0LQN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G402090 PE=3 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 4.4e-115
Identity = 206/214 (96.26%), Postives = 211/214 (98.60%), Query Frame = 0 

Query: 13  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYYPAKHTIKGVRRQNPYPR 72
           MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCS+VSFS + AKHTIKGVRRQNPYPR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 60

Query: 73  KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 132
           KWE+CSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 133 KKKVPNIEIVNDILEYLRTTLGLSNDDLSKLLKKFPEVLGCNLERELKTNVQLLDKEWGI 192
           +KKVPNIEIVNDILEYLR TLGLSNDDLSKLLKKFPEVLGCNLE+ELKTNVQLLDKEWGI
Sbjct: 121 EKKVPNIEIVNDILEYLR-TLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGI 180

Query: 193 QGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCW 227
           QGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCW
Sbjct: 181 QGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCW 213

[Close]
BLAST of Cmc03g0060531 vs. ExPASy TrEMBL
Match: A0A5A7T0X2 (Mitochondrial transcription termination factor family protein isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001190 PE=3 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.6e-109
Identity = 207/230 (90.00%), Postives = 209/230 (90.87%), Query Frame = 0 

Query: 13  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYYPAKHTIKGVRRQNPYPR 72
           MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSY+PAKHTIKGVRRQNPYPR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPR 60

Query: 73  KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 132
           KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 133 KKKVPNIEIVNDILEYLRTTLGLSNDDLSKLLKKFPEVLGCNLERELKTNVQLLDKEWGI 192
           KKKVPNIEIVNDILEYLR TLGLSNDDLSKLLKKFPEVLGCNLE+ELKTNVQLLDKEWGI
Sbjct: 121 KKKVPNIEIVNDILEYLR-TLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGI 180

Query: 193 QGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWSYNGSQSMVEYSQKIG 243
           QGKSLRNLLLRNPK                    SYNGSQSMVEYSQKIG
Sbjct: 181 QGKSLRNLLLRNPK--------------------SYNGSQSMVEYSQKIG 209

[Close]
BLAST of Cmc03g0060531 vs. ExPASy TrEMBL
Match: A0A6J1JTP6 (uncharacterized protein LOC111489650 OS=Cucurbita maxima OX=3661 GN=LOC111489650 PE=3 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.8e-100
Identity = 182/214 (85.05%), Postives = 196/214 (91.59%), Query Frame = 0 

Query: 13  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYYPAKHTIKGVRRQNPYPR 72
           MLGKSL SPIST+DS TR C ST C  TA S AVCSNVSFSY PAK+ I  VRRQ+PYPR
Sbjct: 1   MLGKSLVSPISTVDSVTRLCFSTPCIGTAKSGAVCSNVSFSYQPAKYMIMDVRRQSPYPR 60

Query: 73  KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 132
           KWE+ S++QVESL+LSD+DKKTWEACRQALS+FSFS EEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEIHSTSQVESLVLSDDDKKTWEACRQALSMFSFSDEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 133 KKKVPNIEIVNDILEYLRTTLGLSNDDLSKLLKKFPEVLGCNLERELKTNVQLLDKEWGI 192
           KK+VPNI+ VN+ILEYLR TLGLSNDDLSKLLKKFPEVLGCNLE+ELKTNVQLL+KEWGI
Sbjct: 121 KKEVPNIDTVNEILEYLR-TLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLEKEWGI 180

Query: 193 QGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCW 227
           QGKSLRNLLLRNPKVLGY VDCKGDCIAKCTRCW
Sbjct: 181 QGKSLRNLLLRNPKVLGYNVDCKGDCIAKCTRCW 213

[Close]
BLAST of Cmc03g0060531 vs. ExPASy TrEMBL
Match: A0A6J1FK31 (uncharacterized protein LOC111444935 OS=Cucurbita moschata OX=3662 GN=LOC111444935 PE=3 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.8e-100
Identity = 182/214 (85.05%), Postives = 196/214 (91.59%), Query Frame = 0 

Query: 13  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYYPAKHTIKGVRRQNPYPR 72
           MLGKSL SPIST+DS TR C ST C  TA S+AVCSNVSFSY PAK+ I  VRRQ+PYPR
Sbjct: 1   MLGKSLVSPISTVDSVTRLCFSTPCIGTAKSEAVCSNVSFSYQPAKYMIMDVRRQSPYPR 60

Query: 73  KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 132
           KWE+ S+ QVESL+LSDEDKKTWEACRQALS+FSFS EEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEIHSTAQVESLVLSDEDKKTWEACRQALSMFSFSDEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 133 KKKVPNIEIVNDILEYLRTTLGLSNDDLSKLLKKFPEVLGCNLERELKTNVQLLDKEWGI 192
           KK+VPNI+ VN+ILEYLR TLGLSNDDLSKLLKKFPEVLGCNLE+ELKTNVQLL+KEWGI
Sbjct: 121 KKEVPNIDTVNEILEYLR-TLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLEKEWGI 180

Query: 193 QGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCW 227
           QGKSLR+LLLRNPKVLGY VDCKGDCIAKCTRCW
Sbjct: 181 QGKSLRSLLLRNPKVLGYNVDCKGDCIAKCTRCW 213

[Close]
BLAST of Cmc03g0060531 vs. TAIR 10
Match: AT4G09620.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 238.0 bits (606), Expect = 8.6e-63
Identity = 124/216 (57.41%), Postives = 160/216 (74.07%), Query Frame = 0 

Query: 13  MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYYPAKHTIKGVRRQNPYPR 72
           M+G SLASP++T+ SA  F  S     T  ++ +   ++ SY    H + G  R + Y R
Sbjct: 3   MVGNSLASPLATLGSAKCFRHSAVDLVT-YTNVLPLRLNSSY----HGVNGGVRTSSYSR 62

Query: 73  -KWEV-CSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGE 132
            KW V CS+TQVE+   S+ED   WE C++ALS F FSVEE+DK+LGKAFGHIHSPYW E
Sbjct: 63  SKWIVFCSTTQVET---SNEDPNIWEECKEALSCFDFSVEEKDKILGKAFGHIHSPYWTE 122

Query: 133 DRKKKVPNIEIVNDILEYLRTTLGLSNDDLSKLLKKFPEVLGCNLERELKTNVQLLDKEW 192
           +R K+ P +E +N ILE+LR +LGLS++DL K++KKFPEVLGC+LE E+K N+ +L+ +W
Sbjct: 123 ERVKENPKVETLNQILEFLR-SLGLSDEDLHKVMKKFPEVLGCSLEEEMKPNIGILENQW 182

Query: 193 GIQGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCW 227
           GI GK LRNLLLRNPKVLGY VDCKGDC+A+CTRCW
Sbjct: 183 GITGKQLRNLLLRNPKVLGYNVDCKGDCVAQCTRCW 209

[Close]
BLAST of Cmc03g0060531 vs. TAIR 10
Match: AT5G54180.1 (plastid transcriptionally active 15 )

HSP 1 Score: 43.1 bits (100), Expect = 4.1e-04
Identity = 20/71 (28.17%), Postives = 42/71 (59.15%), Query Frame = 0 

Query: 138 NIEIVNDILEYLRTTLGLSNDDLSKLLKKFPEVLGCNLERELKTNVQLLDKEWGIQGKSL 197
           ++E +N  +E+L++  GL+++ + K++  FP V+  + ER+L+  ++ L KE G     +
Sbjct: 282 SVEHMNGQVEFLKSFAGLTSEQVFKIVHVFPNVISTSKERKLRPRIEFL-KECGFDSPGM 341

Query: 198 RNLLLRNPKVL 209
              L + P +L
Sbjct: 342 FKFLSKAPLIL 351

The following BLAST results are available for this feature:
BLAST of Cmc03g0060531 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008441218.16.7e-11898.60PREDICTED: uncharacterized protein LOC103485418 [Cucumis melo] >XP_008441219.1 P... [more]
XP_011649898.11.4e-11595.39uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus] >XP_011649900.... [more]
XP_004138649.19.1e-11596.26uncharacterized protein LOC101218603 isoform X2 [Cucumis sativus] >XP_031737011.... [more]
KAA0037010.13.3e-10990.00Mitochondrial transcription termination factor family protein isoform 2 [Cucumis... [more]
XP_038885056.11.2e-10690.65uncharacterized protein LOC120075592 [Benincasa hispida] >XP_038885057.1 unchara... [more]
BLAST of Cmc03g0060531 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc03g0060531 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3B2X03.3e-11898.60uncharacterized protein LOC103485418 OS=Cucumis melo OX=3656 GN=LOC103485418 PE=... [more]
A0A0A0LQN84.4e-11596.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G402090 PE=3 SV=1[more]
A0A5A7T0X21.6e-10990.00Mitochondrial transcription termination factor family protein isoform 2 OS=Cucum... [more]
A0A6J1JTP61.8e-10085.05uncharacterized protein LOC111489650 OS=Cucurbita maxima OX=3661 GN=LOC111489650... [more]
A0A6J1FK311.8e-10085.05uncharacterized protein LOC111444935 OS=Cucurbita moschata OX=3662 GN=LOC1114449... [more]
BLAST of Cmc03g0060531 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G09620.18.6e-6357.41Mitochondrial transcription termination factor family protein [more]
AT5G54180.14.1e-0428.17plastid transcriptionally active 15 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 161..193
e-value: 0.0042
score: 26.3
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 146..210
e-value: 1.9E-7
score: 30.3
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 11..226
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10Transcription termination factor 3, mitochondrialcoord: 133..236
e-value: 3.6E-14
score: 54.5
NoneNo IPR availablePANTHERPTHR13068:SF192MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 11..226

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc03g0060531.1Cmc03g0060531.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006353 DNA-templated transcription, termination
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0009507 chloroplast
cellular_component GO:0042646 plastid nucleoid
molecular_function GO:0003690 double-stranded DNA binding