Cmc02g0057821 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0057821
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	RNA-dependent RNA polymerase
Location	CMiso1.1chr02: 23546089 .. 23552326 (+)
RNA-Seq Expression	Cmc02g0057821
Synteny	Cmc02g0057821

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAGTTGAGGATATAATCGTAAATAACATATTCTTGCGATTTGTACATTGAATTAATTAAATTAGAAAAAAGAAAAGAAAAGAAAAGAACTTGAAGAGGGAAGAAAGCAATTGACTGACACTCCCCCGACTCCCTGCCTTCCTCCCAACTTCTAAGAATCTCTTCACTTCACTAAGCCTCATCGGCGGGAACATCTTCCGGTAATGGCTCAGCCGGAGAGATCCACTTTAAGGGTCTCAAACGTGCCGGAATCCGCCATAGCTCAAGACCTCTTGAACTTTCTTAACTCCAAATTAGGCCCTGACTCCGTTTTCGCCATCGAAATCTTCACCGAGCGAAAGAACTGGAAGTCGCGCGGCTCTGGTCGCGTACAGTTCACCACACTGGAGGCGAAAGCCAAAGCCATGGCCCTTTCTGTTCAAAACAACCTCGTCTTCGGCACCCAAAACCTTAGATTCTCTTTGATCAACGATGACATTGTCGTGAGGCCAGTACATGCCACAAACAGGACTGAGAATGGGGTTTTGCATGTGGGTTTTATGCTGAAAGAGGAACGAATGAGTGTTTTGGAATCTTGGGAGGGTGTGAAAGCTTGGATTATGCCGGAGAGGAGAAGGATTGAATTCTGGATATGGCATGAACAAGAATGTTATAAGCTCGAAGTTATGTTTGAGGAAATTTTGGAAACTACTGGGTATTGTTTGGGAGAAGAAAAATTAAATGCACTTCTTTTTAAGGTAAATTTCAACAACGCCTAAGCTGATCATTTGATTTCTATGCTCGTGTTTTAATTGTTCCATCTTTAGGGAGAGTAGGAATAGAGTGTTTCATCTGTGAATAATGTGGATAGGTACTCTGGTATGGTTCCATGTTTCACTTCGGGCTTCGGTTCTAAAGACTTCTTTGTAACATTGTACTTAGTTGGAAACCTTTCTCCAGTGAGGTTTTAATGAAAGCAATTGATTCCGTAGGAAAAAAATGTTTCTTCAAAAGGGATTTTGTCTATTGAATGAAGGAGAAGAGAGAAATAAGCGAGGAATGAGAAAAAATTTTGGGTGAAAGCTTATCATTCTAAACTAGCTAGCTATCTACTTAGTTATCGCCCTGAAATTATCTTATGGTAAATCAAATTGTTGTTTCCTCTTGCAGCTCAAATATGCGCCAAGAATATATAAAAAGATTTCTGGATCAAATATGGCTTCCAAATTCAGCAGTACTCGCTACCGTCTTTGCGTAGAAGATTATGACTATCTTTGGGTTCGAACAACAGAGTTTTCTCCTATGAGGTCAGTAGGTCAGTCAACTTCCTTTTGTTGGGAAGTTGAAGAAGATTTGCAGGCTTCAGATATTTTTTCCTATTTCCCATTTTACAAAGAAACCCAGAAAGATATTGTTTTAGAGGACGGCGAGGAATTTTGCTCTACCTCAGAGATTGTGCCTTTGATTAAATCTGGATTAGGTTCTAATCTAGCCTATGAGGTTGAATATCAGCTCAATTCTTTAGTTCATATGCAAAAAATTAGCCTTGCTGCAGCCAACCAGGATCTGATTGACTTCCTTTGCACTTTAGATATTGATACTGCTTTGAATGTACTGCAAAGGCTACACCAGCTGAAGTTCATTTGTTATGATCCCTTGTCGTTTCTAAAGACCCAATTACATGTTTTCAAAAGGAACTGCAAAAGTCTTCCTTTATCATCTCAGAAGAGGTTGTCGAATAATGTGATGAATTGTTATAGAGTCCTTGTCACTCCATCAAGAATTTATTGTTTGGGACCTGAGCTTGAAACTTCAAATTATGTTGTAAAAAATTTTTCATCATATGCTTCAGATTTTATGAGAGTTACTTTTGTTGAAGAGGACTGGAGTAAGCTTCCTGCAGGTGCTGTTACCACAAGTATACAGCGCGGCATACTCTCGAAACCTTATAGAACCAATATCTATCATCGAATAGTGACTATTCTTCGAGATGGAATTGTTATTGGAGCCAAAAGGTTTGAGTTCTTGGCGTTCTCAGCTAGTCAGCTCCGATCAAATTCTGTTTGGATGTTTGCTTCCAGTGACAATTTGAAAGCAGAAGAAATTAGACAGTGGATGGGATGCTTTGAAAAGATTCGTAGTATCTCCAAATGTGCAGCTAGGATGGGTCAATTGTTCAGTTCTTCCACTCAAACTCTTGTTGTTCCTACACAAGATGTTGAGATTATACCTGATATTGAAGTGAATTCTGATGGTATTGACTACTGCTTCTCGGATGGTATTGGAAAGATTTCACTTTCATTCGCAAGGCAAGTAGCCGATAAGTGTGGAGTGAATCACATCCCTTCAGCATTTCAAATTCGATACGGTGGATACAAAGGTGTCATTGCTGTTGATCGTAATTCCTTCCGTAAACTATCTTTGCGTGACAGCATGCTTAAATTTGAATCGAAGAACAAGATGCTCAACGTTACCAAGTGCTGTGACTCCATGCCCTGCTATTTAAATCGAGAGATTGTTACTCTTTTGTCAACTTTAGGAGTGAAGGACGAAAGTTTTGAGGCATTGCAGCAAGAACAACTACATCTTCTAAAGAGAATGCTGACTGATAAAGCTGTTGCTTTGAATGTCTTAGAAAATTTGCATGGGGCCGATTCTAATAACATTCTGGTGCAGATGTTAAACCACGGTTACGAGCCAAATATCGAGCCTTATCTCTCAATGATGCTTCAAGCACACTATTGGAATTTGTTTTCTGATTTAAGAAGCAGATGCAGAATATTTGTTCCAAAGGGTAGGATCCTCCTGGGCTGCTTGGATGAAACTGGTATTTTAAATTATGGTCAAGTGTATGCCTGCATAACCTTGACGAAATCAGAGCTTCAGAACAGGAATCAGAACTACTTCCATACGATAGATGAAACAAAATCTATACTGATCGGGAAGGTAGTTGTTACAAAAAATCCATGTCTTCACCCAGGAGATGTGAGGGTTCTTGAAGCTATTTTCCATGTAGAACTAGAGGAGAAGGGATTGGTGGACTGTCTTATATTTCCTCAGAAAGGACCAAGGTATGTTTCTGTAGACTGAAGTTGTTGTCTAGTTCATCTTGTGGATTAGCTCTATGGATATTGTCTTCTATCAGTATGATATGCGGGCAGTTATAAGTATAACTTGGAAACATCCTTTTCTTTAATAATGACCCGTCTCAATGCCATTTTTTATTAGGAATTTTAGTTCTTTAAGTTAGTTGTTCAGGAACCAACATACCTCAATGGTAATTGACATCTACTCCTTCCTTTAAGACCAGAGGTTCAATTAAAAAATATCTGTATGTTTATTTCTTGTAGTTAATAATTGCTTTTCTGAATGAATGTCTGGCTTGGTGCAAGTGTTAGAAATGTTTAATGCCTCTTTAAAGTTTGTTGTTTTGAATTGATTTTAAGTACTTGAGATTCCTTTTTCACTTGAAAAGACTTTTGTGTGTTAAGAAGTCAATCCAAGTGAACCCTTAACATATATCTAGGTAGGATCTAACTGGATGTTTTTCTAATAGTTTTGATATTTGAGAAGCCAGTACAGCTCTAAAGGTAAAACATTAGTCGGGGCTGGAATTTTACTCGATACTCGAATTTTTTTGCAGGCCACATACTAATGAATGTTCGGGCGGTGATCTTGATGGAGATTTATATTTCATAAGTTGGGATGAGAATCTGATTCCTCCCAAAACTGAAGCACCTATGGACTATACAGGACGAAGACCACGTATAATGGATCACGATGTAACACTAGAGGTATGTTTAATTATCAAATATTAAAATTATACCACTTTAAACTTAGAAAATGTGAACATTTGTCCTCTCGATCCGTTGGATCGTTGAAATTTGCAGGAAATTCAAAAGTTCTTTGTTGATTATATGATCAATGACACATTAGGTGCCATTTCTACTGCTCATTTAGTTCATGCTGACCGGGAACCGAAAAAAGCCCTAAGTGCGAAATGTTTAGAGCTGGCAGCACTGCATTCCATGGCAGTCGATTTTGCAAAAACCGGAGCACCAGCGGAGATGCCTCGAGTTTTGAAACCGAGGGAGTTCCCAGATTTCATGGAGAGATTTGATAAACCAATGTACATATCCAGTAATGTATTAGGTAAACTCTACAGGGCTGCTATTAAGTCCATTGAGCAAGAAAGGTCAAGACTAGTATGGTCGGAAGAGGCTGCTAGAGCAATTTACGATCACGATCTTGAAGTCGATGGCTTTGAAGCATTCCTTGAAATAGCTGAAACTTACAAAGAAATGTACATAGAAAAAATGAGCATTTTGATGAACTACTACAGTGCAGAGTATGAAGATGAGATATTAATGGGCGATCTTCGAAGTCGAGCATCTTATCTACAACGTGACAATCGCAAGTATGGTGATATGAAGGATCGGATTTTGCTTTCGGTAAAGAGCCTACGCAAGGAAGTCAAAGAATGGTTTGAGAATAGCTGCGACCCACACCAACGCAGGATGATGGCTTCTGCATGGTATCATGTAACTTATCATCCTTCTTACTTCAAAGAAGACATGTTCTACTTTAGCTTCCCATGGGCTGTATCTGATGTTTTACTCAACATAAAGGCAACGAACTCCAAAAGACATCAAGCATAAAAGGAACTGCTAGCTCTAGCTGTGCGTTGTTAGCCAAACATGTCATTTATTCCTTTACCTGACTAACCATAATCCATGTTACTCACTACCACATTTTCAAGCCTCTATCTTTCTGTGAAGGTTGAAATATGTTGAACCAAGTAACGATGGTCATGACTTTCTATTTTCTTGTTTATATTCCGGTGGGTGATTGAGTCAACTAACGTAGACCTTGCCTAGTTTCATCGAACAATTCACTTGACCTAAATGTAGCCGCTGTTTATGGAACTCCTGGTTTCTTTTAGGGATTTTCCCATTTACTTCCCATGGAAAAGATTGGGGAAAGACAGGCCACCCATATAAAGCAACTTTCTCTCAGTATTGTGCCTCCACAAAAACCCAATCTCATTGCAGAACAGTGAAAAGAAGAAAGAAAATTTTCAAGAAAAAAAGAAAGAAAAAGTGCTGATACTATTTTTCAATTCATACAAGGACAATACATATACAAACATTATATGACCTTTTTATTTTACCCCCATATAAAACAAAGCAAGTCCTCTAATCAATATTATTATACACTATTAGGATATAATTTAATATAAAAGAATATTCTTTTTTAAGAAAAAAAAACCCACTCTTATGGTATAGTACATTGATCCTGATGTGCCACCAATACCATTAGGAAGAAAGAGAAAGGAAAGTCCAAAATTAACTCAAACATGTATTTACTTTTGAGAATTAAAAAAGAAAACAAGAAAAATCTAACGGAGGAGGTGGCGGCGACGGCGATGGCGGCGGTGATGTCAGCCAGCCCAATGTGTGGACAATAACAGCACTAAACACGGCGTATTTTATTAAACACAGCGCACCTTTACGCGACGGCAGAAACATCCTTAGTTCCTCCAGTCTTCAACGGCGCCGGAATCGAAGCATAACGAGCAGAGAAGTTTCGATAACCATTGAAATCATCCATATCATCATCCAATTCACCAATCTGTCTCGAACCTTCATCGAAATTCATAGCGTAGCTCAAAGGATCATATTGAAATTTCCCAGCCCTAACCCCACTTCCACCACCACCACCACCACCACCACCACAACCACCACTACGATTCCGATTAAATCGACGAATAAAAGTCTTCCATCTCGGTCCAGCAACAATCTCCGACCACTCACGGAGCTTCAAAATAACCTTAACCCCTCTCGCCCACCACCGTCCCTCGCTATGAACTTGCGATGCCCTAATCCGCTCCCACCACGATGGTCCGACAGTGGCTACACGGCGAGATCCAAAGCACGATAGCCGAAAACAACCGCACCGGGCTGTCGGCAACAAAGAATTGGATTTATCAGCCTCACAACAAGGAGACTCTTCTTGATCTACATCGGTAAACGCCATTATCGGATTTCACTATGAGTTTTTCATTTCCAACTTTATACACCACAAAGCAAAACGAAACGGAAAACAAGCTATGACCTGTCTGACCGGCTACATCCGGTTGCCCAAACAGCATTTTCTAGCTATAATCCATCCAAAATTCCACCGGGAGTTACCGGTCATTTGAGTCTATCTAGTGACGTAAGACGTTCGAGCTGTTGTTTGGAGGGAAGCGCGGGTTAT

mRNA sequence

AGGAGTTGAGGATATAATCGTAAATAACATATTCTTGCGATTTGTACATTGAATTAATTAAATTAGAAAAAAGAAAAGAAAAGAAAAGAACTTGAAGAGGGAAGAAAGCAATTGACTGACACTCCCCCGACTCCCTGCCTTCCTCCCAACTTCTAAGAATCTCTTCACTTCACTAAGCCTCATCGGCGGGAACATCTTCCGGTAATGGCTCAGCCGGAGAGATCCACTTTAAGGGTCTCAAACGTGCCGGAATCCGCCATAGCTCAAGACCTCTTGAACTTTCTTAACTCCAAATTAGGCCCTGACTCCGTTTTCGCCATCGAAATCTTCACCGAGCGAAAGAACTGGAAGTCGCGCGGCTCTGGTCGCGTACAGTTCACCACACTGGAGGCGAAAGCCAAAGCCATGGCCCTTTCTGTTCAAAACAACCTCGTCTTCGGCACCCAAAACCTTAGATTCTCTTTGATCAACGATGACATTGTCGTGAGGCCAGTACATGCCACAAACAGGACTGAGAATGGGGTTTTGCATGTGGGTTTTATGCTGAAAGAGGAACGAATGAGTGTTTTGGAATCTTGGGAGGGTGTGAAAGCTTGGATTATGCCGGAGAGGAGAAGGATTGAATTCTGGATATGGCATGAACAAGAATGTTATAAGCTCGAAGTTATGTTTGAGGAAATTTTGGAAACTACTGGGTATTGTTTGGGAGAAGAAAAATTAAATGCACTTCTTTTTAAGCTCAAATATGCGCCAAGAATATATAAAAAGATTTCTGGATCAAATATGGCTTCCAAATTCAGCAGTACTCGCTACCGTCTTTGCGTAGAAGATTATGACTATCTTTGGGTTCGAACAACAGAGTTTTCTCCTATGAGGTCAGTAGGTCAGTCAACTTCCTTTTGTTGGGAAGTTGAAGAAGATTTGCAGGCTTCAGATATTTTTTCCTATTTCCCATTTTACAAAGAAACCCAGAAAGATATTGTTTTAGAGGACGGCGAGGAATTTTGCTCTACCTCAGAGATTGTGCCTTTGATTAAATCTGGATTAGGTTCTAATCTAGCCTATGAGGTTGAATATCAGCTCAATTCTTTAGTTCATATGCAAAAAATTAGCCTTGCTGCAGCCAACCAGGATCTGATTGACTTCCTTTGCACTTTAGATATTGATACTGCTTTGAATGTACTGCAAAGGCTACACCAGCTGAAGTTCATTTGTTATGATCCCTTGTCGTTTCTAAAGACCCAATTACATGTTTTCAAAAGGAACTGCAAAAGTCTTCCTTTATCATCTCAGAAGAGGTTGTCGAATAATGTGATGAATTGTTATAGAGTCCTTGTCACTCCATCAAGAATTTATTGTTTGGGACCTGAGCTTGAAACTTCAAATTATGTTGTAAAAAATTTTTCATCATATGCTTCAGATTTTATGAGAGTTACTTTTGTTGAAGAGGACTGGAGTAAGCTTCCTGCAGGTGCTGTTACCACAAGTATACAGCGCGGCATACTCTCGAAACCTTATAGAACCAATATCTATCATCGAATAGTGACTATTCTTCGAGATGGAATTGTTATTGGAGCCAAAAGGTTTGAGTTCTTGGCGTTCTCAGCTAGTCAGCTCCGATCAAATTCTGTTTGGATGTTTGCTTCCAGTGACAATTTGAAAGCAGAAGAAATTAGACAGTGGATGGGATGCTTTGAAAAGATTCGTAGTATCTCCAAATGTGCAGCTAGGATGGGTCAATTGTTCAGTTCTTCCACTCAAACTCTTGTTGTTCCTACACAAGATGTTGAGATTATACCTGATATTGAAGTGAATTCTGATGGTATTGACTACTGCTTCTCGGATGGTATTGGAAAGATTTCACTTTCATTCGCAAGGCAAGTAGCCGATAAGTGTGGAGTGAATCACATCCCTTCAGCATTTCAAATTCGATACGGTGGATACAAAGGTGTCATTGCTGTTGATCGTAATTCCTTCCGTAAACTATCTTTGCGTGACAGCATGCTTAAATTTGAATCGAAGAACAAGATGCTCAACGTTACCAAGTGCTGTGACTCCATGCCCTGCTATTTAAATCGAGAGATTGTTACTCTTTTGTCAACTTTAGGAGTGAAGGACGAAAGTTTTGAGGCATTGCAGCAAGAACAACTACATCTTCTAAAGAGAATGCTGACTGATAAAGCTGTTGCTTTGAATGTCTTAGAAAATTTGCATGGGGCCGATTCTAATAACATTCTGGTGCAGATGTTAAACCACGGTTACGAGCCAAATATCGAGCCTTATCTCTCAATGATGCTTCAAGCACACTATTGGAATTTGTTTTCTGATTTAAGAAGCAGATGCAGAATATTTGTTCCAAAGGGTAGGATCCTCCTGGGCTGCTTGGATGAAACTGGTATTTTAAATTATGGTCAAGTGTATGCCTGCATAACCTTGACGAAATCAGAGCTTCAGAACAGGAATCAGAACTACTTCCATACGATAGATGAAACAAAATCTATACTGATCGGGAAGGTAGTTGTTACAAAAAATCCATGTCTTCACCCAGGAGATGTGAGGGTTCTTGAAGCTATTTTCCATGTAGAACTAGAGGAGAAGGGATTGGTGGACTGTCTTATATTTCCTCAGAAAGGACCAAGGCCACATACTAATGAATGTTCGGGCGGTGATCTTGATGGAGATTTATATTTCATAAGTTGGGATGAGAATCTGATTCCTCCCAAAACTGAAGCACCTATGGACTATACAGGACGAAGACCACGTATAATGGATCACGATGTAACACTAGAGGAAATTCAAAAGTTCTTTGTTGATTATATGATCAATGACACATTAGGTGCCATTTCTACTGCTCATTTAGTTCATGCTGACCGGGAACCGAAAAAAGCCCTAAGTGCGAAATGTTTAGAGCTGGCAGCACTGCATTCCATGGCAGTCGATTTTGCAAAAACCGGAGCACCAGCGGAGATGCCTCGAGTTTTGAAACCGAGGGAGTTCCCAGATTTCATGGAGAGATTTGATAAACCAATGTACATATCCAGTAATGTATTAGGTAAACTCTACAGGGCTGCTATTAAGTCCATTGAGCAAGAAAGGTCAAGACTAGTATGGTCGGAAGAGGCTGCTAGAGCAATTTACGATCACGATCTTGAAGTCGATGGCTTTGAAGCATTCCTTGAAATAGCTGAAACTTACAAAGAAATGTACATAGAAAAAATGAGCATTTTGATGAACTACTACAGTGCAGAGTATGAAGATGAGATATTAATGGGCGATCTTCGAAGTCGAGCATCTTATCTACAACGTGACAATCGCAAGTATGGTGATATGAAGGATCGGATTTTGCTTTCGGTAAAGAGCCTACGCAAGGAAGTCAAAGAATGGTTTGAGAATAGCTGCGACCCACACCAACGCAGGATGATGGCTTCTGCATGGTATCATGTAACTTATCATCCTTCTTACTTCAAAGAAGACATGTTCTACTTTAGCTTCCCATGGGCTGTATCTGATGTTTTACTCAACATAAAGGCAACGAACTCCAAAAGACATCAAGCATAAAAGGAACTGCTAGCTCTAGCTGTGCGTTGTTAGCCAAACATGTCATTTATTCCTTTACCTGACTAACCATAATCCATGTTACTCACTACCACATTTTCAAGCCTCTATCTTTCTGTGAAGGTTGAAATATGTTGAACCAAGTAACGATGGTCATGACTTTCTATTTTCTTGTTTATATTCCGGTGGGTGATTGAGTCAACTAACGTAGACCTTGCCTAGTTTCATCGAACAATTCACTTGACCTAAATGTAGCCGCTGTTTATGGAACTCCTGGTTTCTTTTAGGGATTTTCCCATTTACTTCCCATGGAAAAGATTGGGGAAAGACAGGCCACCCATATAAAGCAACTTTCTCTCAGTATTGTGCCTCCACAAAAACCCAATCTCATTGCAGAACAGTGAAAAGAAGAAAGAAAATTTTCAAGAAAAAAAGAAAGAAAAAGTGCTGATACTATTTTTCAATTCATACAAGGACAATACATATACAAACATTATATGACCTTTTTATTTTACCCCCATATAAAACAAAGCAAGTCCTCTAATCAATATTATTATACACTATTAGGATATAATTTAATATAAAAGAATATTCTTTTTTAAGAAAAAAAAACCCACTCTTATGGTATAGTACATTGATCCTGATGTGCCACCAATACCATTAGGAAGAAAGAGAAAGGAAAGTCCAAAATTAACTCAAACATGTATTTACTTTTGAGAATTAAAAAAGAAAACAAGAAAAATCTAACGGAGGAGGTGGCGGCGACGGCGATGGCGGCGGTGATGTCAGCCAGCCCAATGTGTGGACAATAACAGCACTAAACACGGCGTATTTTATTAAACACAGCGCACCTTTACGCGACGGCAGAAACATCCTTAGTTCCTCCAGTCTTCAACGGCGCCGGAATCGAAGCATAACGAGCAGAGAAGTTTCGATAACCATTGAAATCATCCATATCATCATCCAATTCACCAATCTGTCTCGAACCTTCATCGAAATTCATAGCGTAGCTCAAAGGATCATATTGAAATTTCCCAGCCCTAACCCCACTTCCACCACCACCACCACCACCACCACCACAACCACCACTACGATTCCGATTAAATCGACGAATAAAAGTCTTCCATCTCGGTCCAGCAACAATCTCCGACCACTCACGGAGCTTCAAAATAACCTTAACCCCTCTCGCCCACCACCGTCCCTCGCTATGAACTTGCGATGCCCTAATCCGCTCCCACCACGATGGTCCGACAGTGGCTACACGGCGAGATCCAAAGCACGATAGCCGAAAACAACCGCACCGGGCTGTCGGCAACAAAGAATTGGATTTATCAGCCTCACAACAAGGAGACTCTTCTTGATCTACATCGGTAAACGCCATTATCGGATTTCACTATGAGTTTTTCATTTCCAACTTTATACACCACAAAGCAAAACGAAACGGAAAACAAGCTATGACCTGTCTGACCGGCTACATCCGGTTGCCCAAACAGCATTTTCTAGCTATAATCCATCCAAAATTCCACCGGGAGTTACCGGTCATTTGAGTCTATCTAGTGACGTAAGACGTTCGAGCTGTTGTTTGGAGGGAAGCGCGGGTTAT

Coding sequence (CDS)

ATGGCTCAGCCGGAGAGATCCACTTTAAGGGTCTCAAACGTGCCGGAATCCGCCATAGCTCAAGACCTCTTGAACTTTCTTAACTCCAAATTAGGCCCTGACTCCGTTTTCGCCATCGAAATCTTCACCGAGCGAAAGAACTGGAAGTCGCGCGGCTCTGGTCGCGTACAGTTCACCACACTGGAGGCGAAAGCCAAAGCCATGGCCCTTTCTGTTCAAAACAACCTCGTCTTCGGCACCCAAAACCTTAGATTCTCTTTGATCAACGATGACATTGTCGTGAGGCCAGTACATGCCACAAACAGGACTGAGAATGGGGTTTTGCATGTGGGTTTTATGCTGAAAGAGGAACGAATGAGTGTTTTGGAATCTTGGGAGGGTGTGAAAGCTTGGATTATGCCGGAGAGGAGAAGGATTGAATTCTGGATATGGCATGAACAAGAATGTTATAAGCTCGAAGTTATGTTTGAGGAAATTTTGGAAACTACTGGGTATTGTTTGGGAGAAGAAAAATTAAATGCACTTCTTTTTAAGCTCAAATATGCGCCAAGAATATATAAAAAGATTTCTGGATCAAATATGGCTTCCAAATTCAGCAGTACTCGCTACCGTCTTTGCGTAGAAGATTATGACTATCTTTGGGTTCGAACAACAGAGTTTTCTCCTATGAGGTCAGTAGGTCAGTCAACTTCCTTTTGTTGGGAAGTTGAAGAAGATTTGCAGGCTTCAGATATTTTTTCCTATTTCCCATTTTACAAAGAAACCCAGAAAGATATTGTTTTAGAGGACGGCGAGGAATTTTGCTCTACCTCAGAGATTGTGCCTTTGATTAAATCTGGATTAGGTTCTAATCTAGCCTATGAGGTTGAATATCAGCTCAATTCTTTAGTTCATATGCAAAAAATTAGCCTTGCTGCAGCCAACCAGGATCTGATTGACTTCCTTTGCACTTTAGATATTGATACTGCTTTGAATGTACTGCAAAGGCTACACCAGCTGAAGTTCATTTGTTATGATCCCTTGTCGTTTCTAAAGACCCAATTACATGTTTTCAAAAGGAACTGCAAAAGTCTTCCTTTATCATCTCAGAAGAGGTTGTCGAATAATGTGATGAATTGTTATAGAGTCCTTGTCACTCCATCAAGAATTTATTGTTTGGGACCTGAGCTTGAAACTTCAAATTATGTTGTAAAAAATTTTTCATCATATGCTTCAGATTTTATGAGAGTTACTTTTGTTGAAGAGGACTGGAGTAAGCTTCCTGCAGGTGCTGTTACCACAAGTATACAGCGCGGCATACTCTCGAAACCTTATAGAACCAATATCTATCATCGAATAGTGACTATTCTTCGAGATGGAATTGTTATTGGAGCCAAAAGGTTTGAGTTCTTGGCGTTCTCAGCTAGTCAGCTCCGATCAAATTCTGTTTGGATGTTTGCTTCCAGTGACAATTTGAAAGCAGAAGAAATTAGACAGTGGATGGGATGCTTTGAAAAGATTCGTAGTATCTCCAAATGTGCAGCTAGGATGGGTCAATTGTTCAGTTCTTCCACTCAAACTCTTGTTGTTCCTACACAAGATGTTGAGATTATACCTGATATTGAAGTGAATTCTGATGGTATTGACTACTGCTTCTCGGATGGTATTGGAAAGATTTCACTTTCATTCGCAAGGCAAGTAGCCGATAAGTGTGGAGTGAATCACATCCCTTCAGCATTTCAAATTCGATACGGTGGATACAAAGGTGTCATTGCTGTTGATCGTAATTCCTTCCGTAAACTATCTTTGCGTGACAGCATGCTTAAATTTGAATCGAAGAACAAGATGCTCAACGTTACCAAGTGCTGTGACTCCATGCCCTGCTATTTAAATCGAGAGATTGTTACTCTTTTGTCAACTTTAGGAGTGAAGGACGAAAGTTTTGAGGCATTGCAGCAAGAACAACTACATCTTCTAAAGAGAATGCTGACTGATAAAGCTGTTGCTTTGAATGTCTTAGAAAATTTGCATGGGGCCGATTCTAATAACATTCTGGTGCAGATGTTAAACCACGGTTACGAGCCAAATATCGAGCCTTATCTCTCAATGATGCTTCAAGCACACTATTGGAATTTGTTTTCTGATTTAAGAAGCAGATGCAGAATATTTGTTCCAAAGGGTAGGATCCTCCTGGGCTGCTTGGATGAAACTGGTATTTTAAATTATGGTCAAGTGTATGCCTGCATAACCTTGACGAAATCAGAGCTTCAGAACAGGAATCAGAACTACTTCCATACGATAGATGAAACAAAATCTATACTGATCGGGAAGGTAGTTGTTACAAAAAATCCATGTCTTCACCCAGGAGATGTGAGGGTTCTTGAAGCTATTTTCCATGTAGAACTAGAGGAGAAGGGATTGGTGGACTGTCTTATATTTCCTCAGAAAGGACCAAGGCCACATACTAATGAATGTTCGGGCGGTGATCTTGATGGAGATTTATATTTCATAAGTTGGGATGAGAATCTGATTCCTCCCAAAACTGAAGCACCTATGGACTATACAGGACGAAGACCACGTATAATGGATCACGATGTAACACTAGAGGAAATTCAAAAGTTCTTTGTTGATTATATGATCAATGACACATTAGGTGCCATTTCTACTGCTCATTTAGTTCATGCTGACCGGGAACCGAAAAAAGCCCTAAGTGCGAAATGTTTAGAGCTGGCAGCACTGCATTCCATGGCAGTCGATTTTGCAAAAACCGGAGCACCAGCGGAGATGCCTCGAGTTTTGAAACCGAGGGAGTTCCCAGATTTCATGGAGAGATTTGATAAACCAATGTACATATCCAGTAATGTATTAGGTAAACTCTACAGGGCTGCTATTAAGTCCATTGAGCAAGAAAGGTCAAGACTAGTATGGTCGGAAGAGGCTGCTAGAGCAATTTACGATCACGATCTTGAAGTCGATGGCTTTGAAGCATTCCTTGAAATAGCTGAAACTTACAAAGAAATGTACATAGAAAAAATGAGCATTTTGATGAACTACTACAGTGCAGAGTATGAAGATGAGATATTAATGGGCGATCTTCGAAGTCGAGCATCTTATCTACAACGTGACAATCGCAAGTATGGTGATATGAAGGATCGGATTTTGCTTTCGGTAAAGAGCCTACGCAAGGAAGTCAAAGAATGGTTTGAGAATAGCTGCGACCCACACCAACGCAGGATGATGGCTTCTGCATGGTATCATGTAACTTATCATCCTTCTTACTTCAAAGAAGACATGTTCTACTTTAGCTTCCCATGGGCTGTATCTGATGTTTTACTCAACATAAAGGCAACGAACTCCAAAAGACATCAAGCATAA

Protein sequence

MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMSVLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGYCLGEEKLNALLFKLKYAPRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDLQASDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQKISLAAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLKTQLHVFKRNCKSLPLSSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKLPAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLAFSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDGIDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSMLKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLKRMLTDKAVALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKSILIGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDGDLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKCLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAIKSIEQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYSAEYEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSCDPHQRRMMASAWYHVTYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKRHQA

Homology

[Close]

BLAST of Cmc02g0057821 vs. NCBI nr
Match: XP_008453109.1 (PREDICTED: RNA-dependent RNA polymerase 2 [Cucumis melo])

HSP 1 Score: 2249.2 bits (5827), Expect = 0.0e+00
Identity = 1116/1117 (99.91%), Postives = 1116/1117 (99.91%), Query Frame = 0


Query: 1    MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
            MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT
Sbjct: 1    MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60

Query: 61   LEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS 120
            LEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS
Sbjct: 61   LEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS 120

Query: 121  VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGYCLGEEKLNALLFKLK 180
            VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGYCLGEEKLNALLFKLK
Sbjct: 121  VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGYCLGEEKLNALLFKLK 180

Query: 181  YAPRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDL 240
            YAPRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDL
Sbjct: 181  YAPRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDL 240

Query: 241  QASDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQ 300
            QASDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQ
Sbjct: 241  QASDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQ 300

Query: 301  KISLAAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLKTQLHVFKRNCKSLPL 360
            KISLAAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLKTQLHVFKRNCKSLPL
Sbjct: 301  KISLAAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLKTQLHVFKRNCKSLPL 360

Query: 361  SSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKL 420
            SSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKL
Sbjct: 361  SSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKL 420

Query: 421  PAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLAFSASQLRSNSVWMFA 480
            PAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLAFSASQLRSNSVWMFA
Sbjct: 421  PAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLAFSASQLRSNSVWMFA 480

Query: 481  SSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540
            SSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG
Sbjct: 481  SSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540

Query: 541  IDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600
            IDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM
Sbjct: 541  IDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600

Query: 601  LKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLKRMLTDKA 660
            LKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLKRMLTDKA
Sbjct: 601  LKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLKRMLTDKA 660

Query: 661  VALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720
            VALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG
Sbjct: 661  VALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720

Query: 721  RILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKSILIGKVVVTKNPCLH 780
            RILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKSILIGKVVVTKNPCLH
Sbjct: 721  RILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKSILIGKVVVTKNPCLH 780

Query: 781  PGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDGDLYFISWDENLIPPK 840
            PGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDGDLYFISWDENLIPPK
Sbjct: 781  PGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDGDLYFISWDENLIPPK 840

Query: 841  TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKC 900
            TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKC
Sbjct: 841  TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKC 900

Query: 901  LELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAIKSI 960
            LELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAIKSI
Sbjct: 901  LELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAIKSI 960

Query: 961  EQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYSAEYEDEI 1020
            EQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKMSILMNYY AEYEDEI
Sbjct: 961  EQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYGAEYEDEI 1020

Query: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSCDPHQRRMMASAWYHV 1080
            LMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSCDPHQRRMMASAWYHV
Sbjct: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSCDPHQRRMMASAWYHV 1080

Query: 1081 TYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKRHQA 1118
            TYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKRHQA
Sbjct: 1081 TYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKRHQA 1117

[Close]

BLAST of Cmc02g0057821 vs. NCBI nr
Match: KAA0057882.1 (RNA-dependent RNA polymerase 2 [Cucumis melo var. makuwa])

HSP 1 Score: 2213.3 bits (5734), Expect = 0.0e+00
Identity = 1106/1132 (97.70%), Postives = 1108/1132 (97.88%), Query Frame = 0


Query: 1    MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
            MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT
Sbjct: 1    MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60

Query: 61   LEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS 120
            LEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS
Sbjct: 61   LEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS 120

Query: 121  VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGYC---------LGEEK 180
            VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGY           G + 
Sbjct: 121  VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGYSGMVPCFTSGFGSKD 180

Query: 181  LNALLF------KLKYAPRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRS 240
                L+       LKYAPRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRS
Sbjct: 181  FFVTLYLVGNLSPLKYAPRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRS 240

Query: 241  VGQSTSFCWEVEEDLQASDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNL 300
            VGQSTSFCWEVEEDLQASDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNL
Sbjct: 241  VGQSTSFCWEVEEDLQASDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNL 300

Query: 301  AYEVEYQLNSLVHMQKISLAAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLK 360
            AYEVEYQLNSLVHMQKISLAAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLK
Sbjct: 301  AYEVEYQLNSLVHMQKISLAAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLK 360

Query: 361  TQLHVFKRNCKSLPLSSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYAS 420
            TQLHVFKRNCKSLPLSSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYAS
Sbjct: 361  TQLHVFKRNCKSLPLSSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYAS 420

Query: 421  DFMRVTFVEEDWSKLPAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLA 480
            DFMRVTFVEEDWSKLPAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLA
Sbjct: 421  DFMRVTFVEEDWSKLPAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLA 480

Query: 481  FSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPT 540
            FSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPT
Sbjct: 481  FSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPT 540

Query: 541  QDVEIIPDIEVNSDGIDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIA 600
            QDVEIIPDIEVNSDGIDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIA
Sbjct: 541  QDVEIIPDIEVNSDGIDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIA 600

Query: 601  VDRNSFRKLSLRDSMLKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQ 660
            VDRNSFRKLSLRDSMLKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQ
Sbjct: 601  VDRNSFRKLSLRDSMLKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQ 660

Query: 661  QEQLHLLKRMLTDKAVALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNL 720
            QEQLHLLKRMLTDKAVALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNL
Sbjct: 661  QEQLHLLKRMLTDKAVALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNL 720

Query: 721  FSDLRSRCRIFVPKGRILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKS 780
            FSDLRSRCRIFVPKGRILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKS
Sbjct: 721  FSDLRSRCRIFVPKGRILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKS 780

Query: 781  ILIGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDG 840
            ILIGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDG
Sbjct: 781  ILIGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDG 840

Query: 841  DLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHL 900
            DLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHL
Sbjct: 841  DLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHL 900

Query: 901  VHADREPKKALSAKCLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYIS 960
            VHADREPKKALSAKCLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYIS
Sbjct: 901  VHADREPKKALSAKCLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYIS 960

Query: 961  SNVLGKLYRAAIKSIEQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKM 1020
            SNVLGKLYRAAIKSIEQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKM
Sbjct: 961  SNVLGKLYRAAIKSIEQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKM 1020

Query: 1021 SILMNYYSAEYEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSC 1080
            SILMNYYSAEYEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSC
Sbjct: 1021 SILMNYYSAEYEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSC 1080

Query: 1081 DPHQRRMMASAWYHVTYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKRHQA 1118
            DPHQRRMMASAWYHVTYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKRHQA
Sbjct: 1081 DPHQRRMMASAWYHVTYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKRHQA 1132

[Close]

BLAST of Cmc02g0057821 vs. NCBI nr
Match: TYJ98569.1 (RNA-dependent RNA polymerase 2 [Cucumis melo var. makuwa])

HSP 1 Score: 2211.8 bits (5730), Expect = 0.0e+00
Identity = 1105/1132 (97.61%), Postives = 1107/1132 (97.79%), Query Frame = 0


Query: 1    MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
            MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT
Sbjct: 1    MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60

Query: 61   LEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS 120
            LEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS
Sbjct: 61   LEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS 120

Query: 121  VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGYC---------LGEEK 180
            VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGY           G + 
Sbjct: 121  VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGYSGMVPCFTSGFGSKD 180

Query: 181  LNALLF------KLKYAPRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRS 240
                L+       LKYAPRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRS
Sbjct: 181  FFVTLYLVGNLSPLKYAPRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRS 240

Query: 241  VGQSTSFCWEVEEDLQASDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNL 300
            VGQSTSFCWEVEEDLQASDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNL
Sbjct: 241  VGQSTSFCWEVEEDLQASDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNL 300

Query: 301  AYEVEYQLNSLVHMQKISLAAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLK 360
            AYEVEYQLNSLVHMQKISLAAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLK
Sbjct: 301  AYEVEYQLNSLVHMQKISLAAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLK 360

Query: 361  TQLHVFKRNCKSLPLSSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYAS 420
            TQLHVFKRNCKSLPLSSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYAS
Sbjct: 361  TQLHVFKRNCKSLPLSSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYAS 420

Query: 421  DFMRVTFVEEDWSKLPAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLA 480
            DFMRVTFVEEDWSKLPAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLA
Sbjct: 421  DFMRVTFVEEDWSKLPAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLA 480

Query: 481  FSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPT 540
            FSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPT
Sbjct: 481  FSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPT 540

Query: 541  QDVEIIPDIEVNSDGIDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIA 600
            QDVEIIPDIEVNSDGIDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIA
Sbjct: 541  QDVEIIPDIEVNSDGIDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIA 600

Query: 601  VDRNSFRKLSLRDSMLKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQ 660
            VDRNSFRKLSLRDSMLKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQ
Sbjct: 601  VDRNSFRKLSLRDSMLKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQ 660

Query: 661  QEQLHLLKRMLTDKAVALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNL 720
            QEQLHLLKRMLTDKAVALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNL
Sbjct: 661  QEQLHLLKRMLTDKAVALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNL 720

Query: 721  FSDLRSRCRIFVPKGRILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKS 780
            FSDLRSRCRIFVPKGRILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKS
Sbjct: 721  FSDLRSRCRIFVPKGRILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKS 780

Query: 781  ILIGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDG 840
            ILIGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDG
Sbjct: 781  ILIGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDG 840

Query: 841  DLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHL 900
            DLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHL
Sbjct: 841  DLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHL 900

Query: 901  VHADREPKKALSAKCLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYIS 960
            VHADREPKKALSAKCLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYIS
Sbjct: 901  VHADREPKKALSAKCLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYIS 960

Query: 961  SNVLGKLYRAAIKSIEQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKM 1020
            SNVLGKLYRAAIKSIEQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKM
Sbjct: 961  SNVLGKLYRAAIKSIEQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKM 1020

Query: 1021 SILMNYYSAEYEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSC 1080
            SILMNYY AEYEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSC
Sbjct: 1021 SILMNYYGAEYEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSC 1080

Query: 1081 DPHQRRMMASAWYHVTYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKRHQA 1118
            DPHQRRMMASAWYHVTYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKRHQA
Sbjct: 1081 DPHQRRMMASAWYHVTYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKRHQA 1132

[Close]

BLAST of Cmc02g0057821 vs. NCBI nr
Match: NP_001267608.1 (RNA-dependent RNA polymerase 2-like [Cucumis sativus] >ADU77018.1 RNA-dependent RNA polymerase 2 [Cucumis sativus] >KGN63597.1 hypothetical protein Csa_013751 [Cucumis sativus])

HSP 1 Score: 2199.1 bits (5697), Expect = 0.0e+00
Identity = 1087/1117 (97.31%), Postives = 1104/1117 (98.84%), Query Frame = 0


Query: 1    MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
            MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT
Sbjct: 1    MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60

Query: 61   LEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS 120
            LEAKAKAM+LSVQN+LVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS
Sbjct: 61   LEAKAKAMSLSVQNSLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS 120

Query: 121  VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGYCLGEEKLNALLFKLK 180
            VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTG+CLGEEKLNALL KLK
Sbjct: 121  VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGHCLGEEKLNALLLKLK 180

Query: 181  YAPRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDL 240
            YAPRIYKKISGSNMAS+FSSTRYRLC+EDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDL
Sbjct: 181  YAPRIYKKISGSNMASRFSSTRYRLCIEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDL 240

Query: 241  QASDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQ 300
            QASDIFS FPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQ
Sbjct: 241  QASDIFSCFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQ 300

Query: 301  KISLAAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLKTQLHVFKRNCKSLPL 360
            KISL+AANQDLIDFLCTLDIDTALNVLQRLHQLKF+CYDPLSFLKTQLHV+KRNCKSLP 
Sbjct: 301  KISLSAANQDLIDFLCTLDIDTALNVLQRLHQLKFVCYDPLSFLKTQLHVYKRNCKSLPP 360

Query: 361  SSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKL 420
            SSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKL
Sbjct: 361  SSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKL 420

Query: 421  PAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLAFSASQLRSNSVWMFA 480
            PAGAVTTSIQRGILSKPYRT IYHRI+T+LRDGIVIGAKRFEFLAFSASQLRSNSVWMFA
Sbjct: 421  PAGAVTTSIQRGILSKPYRTEIYHRIMTVLRDGIVIGAKRFEFLAFSASQLRSNSVWMFA 480

Query: 481  SSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540
            SSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPT+DVEIIPDIEVN+DG
Sbjct: 481  SSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTRDVEIIPDIEVNTDG 540

Query: 541  IDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600
            IDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM
Sbjct: 541  IDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600

Query: 601  LKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLKRMLTDKA 660
            LKFESKNKMLNVTKCCDSMPCYLNREI TLLSTLGVKDESFEALQQEQLHLLKRMLTDK 
Sbjct: 601  LKFESKNKMLNVTKCCDSMPCYLNREIATLLSTLGVKDESFEALQQEQLHLLKRMLTDKD 660

Query: 661  VALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720
            VALNVLEN HGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG
Sbjct: 661  VALNVLENFHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720

Query: 721  RILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKSILIGKVVVTKNPCLH 780
            RILLGCLDETGILNYGQVYACITLTKSELQ+RNQNYFHTIDETKSIL+GKVVVTKNPCLH
Sbjct: 721  RILLGCLDETGILNYGQVYACITLTKSELQSRNQNYFHTIDETKSILLGKVVVTKNPCLH 780

Query: 781  PGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDGDLYFISWDENLIPPK 840
            PGDVRVLEAIFHVELEEKGLVDCLIFPQKG RPHTNECSGGDLDGDLYFISWDENLIPPK
Sbjct: 781  PGDVRVLEAIFHVELEEKGLVDCLIFPQKGARPHTNECSGGDLDGDLYFISWDENLIPPK 840

Query: 841  TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKC 900
            TEAPMDYTGRRPRIMDHDV LEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKC
Sbjct: 841  TEAPMDYTGRRPRIMDHDVKLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKC 900

Query: 901  LELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAIKSI 960
            LELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAA+KSI
Sbjct: 901  LELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAVKSI 960

Query: 961  EQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYSAEYEDEI 1020
            EQERSRLVWSEEAARAIYD+DLEVDGFEAFLEIAETYKEMYIEKMSILMNYY AEYEDEI
Sbjct: 961  EQERSRLVWSEEAARAIYDYDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYGAEYEDEI 1020

Query: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSCDPHQRRMMASAWYHV 1080
            LMGDLRSRASYLQRDNRKYGDMKDRILLSVK+LRKEVKEWFENSCDP  RRMMASAWYHV
Sbjct: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKNLRKEVKEWFENSCDPLNRRMMASAWYHV 1080

Query: 1081 TYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKRHQA 1118
            TYHPSYFKEDMFYFSFPWAVSDVLLNIKA NSKRHQA
Sbjct: 1081 TYHPSYFKEDMFYFSFPWAVSDVLLNIKAMNSKRHQA 1117

[Close]

BLAST of Cmc02g0057821 vs. NCBI nr
Match: XP_038878920.1 (RNA-dependent RNA polymerase 2 [Benincasa hispida])

HSP 1 Score: 2109.0 bits (5463), Expect = 0.0e+00
Identity = 1039/1117 (93.02%), Postives = 1079/1117 (96.60%), Query Frame = 0


Query: 1    MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
            MAQPERSTL+VSNVPESAIAQDL  FL+SKLGPDS+FAIEIFTERKNWKSRGSGRVQFTT
Sbjct: 1    MAQPERSTLKVSNVPESAIAQDLWTFLSSKLGPDSIFAIEIFTERKNWKSRGSGRVQFTT 60

Query: 61   LEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS 120
            LE K+KA +LSVQNNLVF + NLRFS INDDIVVRPVHA NR ENGVLHVGFMLKE+RM 
Sbjct: 61   LETKSKAQSLSVQNNLVFNSHNLRFSEINDDIVVRPVHARNRAENGVLHVGFMLKEDRMC 120

Query: 121  VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGYCLGEEKLNALLFKLK 180
            VLESW+GVKAWIMPERRR+EFWIWHE+ECYKLEVMFEEILETTG+CLG EKLNALL KLK
Sbjct: 121  VLESWDGVKAWIMPERRRVEFWIWHEKECYKLEVMFEEILETTGFCLGHEKLNALLLKLK 180

Query: 181  YAPRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDL 240
            YAPRIYKKISGSNMAS+FSSTRYRLC EDYDYLWVRTTEFS MRSVGQSTSFCWEVEEDL
Sbjct: 181  YAPRIYKKISGSNMASRFSSTRYRLCREDYDYLWVRTTEFSAMRSVGQSTSFCWEVEEDL 240

Query: 241  QASDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQ 300
             AS+IF  FPFY+ETQKDIVLEDGEEF ++SEIVPLIK GLGSNL YEV+YQLNSLVHMQ
Sbjct: 241  LASNIFLSFPFYRETQKDIVLEDGEEFGTSSEIVPLIKFGLGSNLVYEVQYQLNSLVHMQ 300

Query: 301  KISLAAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLKTQLHVFKRNCKSLPL 360
            KISLAAAN DLI+FL TLD+DTALNVLQRLHQLKFICYDPLSFLKTQLHV KRNCK+L L
Sbjct: 301  KISLAAANDDLINFLSTLDVDTALNVLQRLHQLKFICYDPLSFLKTQLHVLKRNCKNLSL 360

Query: 361  SSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKL 420
            SSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNF+SYASDFMRVTFVEEDWSKL
Sbjct: 361  SSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKL 420

Query: 421  PAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLAFSASQLRSNSVWMFA 480
            PAGAVTTSIQRGILSKPYRT IYHRI+ ILRDGIVIGAKRFEFLAFSASQLRSNSVWMFA
Sbjct: 421  PAGAVTTSIQRGILSKPYRTEIYHRIMNILRDGIVIGAKRFEFLAFSASQLRSNSVWMFA 480

Query: 481  SSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540
            SS+NLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG
Sbjct: 481  SSNNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540

Query: 541  IDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600
            IDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM
Sbjct: 541  IDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600

Query: 601  LKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLKRMLTDKA 660
            LKFESKNKMLNVTK  DSMPCYLNREIVTLLSTLGV+DESFEALQQEQLHLL RMLTDK 
Sbjct: 601  LKFESKNKMLNVTKWSDSMPCYLNREIVTLLSTLGVQDESFEALQQEQLHLLGRMLTDKV 660

Query: 661  VALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720
            VALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMM+QAHYWNLFSDLRSRCRIFVPKG
Sbjct: 661  VALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMIQAHYWNLFSDLRSRCRIFVPKG 720

Query: 721  RILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKSILIGKVVVTKNPCLH 780
            RILLGCLDETGILNYGQVYACITLTKSELQ+RNQ YFH IDETKSIL+GKVVVTKNPCLH
Sbjct: 721  RILLGCLDETGILNYGQVYACITLTKSELQDRNQKYFHKIDETKSILLGKVVVTKNPCLH 780

Query: 781  PGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDGDLYFISWDENLIPPK 840
            PGDVRVLEAIFHVELEEKGLVDCLIFPQKG RPHTNECSGGDLDGDLYFISWDENLIPP+
Sbjct: 781  PGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPPR 840

Query: 841  TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKC 900
            TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALS+KC
Sbjct: 841  TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKC 900

Query: 901  LELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAIKSI 960
            LELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYIS+NVLGKLYRAA+KSI
Sbjct: 901  LELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISNNVLGKLYRAAVKSI 960

Query: 961  EQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYSAEYEDEI 1020
            EQERSRLVWSEEAARA+YDHDLEVDGFEAFLE+AE+YK++YIEKMSILMNYY AEYEDEI
Sbjct: 961  EQERSRLVWSEEAARAVYDHDLEVDGFEAFLEMAESYKDLYIEKMSILMNYYGAEYEDEI 1020

Query: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSCDPHQRRMMASAWYHV 1080
            LMGDLRSRASYLQRDNRKYGDMKDRILLS+K+LRKEVKEWFENSC PH+ +MMASAWYHV
Sbjct: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSMKNLRKEVKEWFENSCAPHEHKMMASAWYHV 1080

Query: 1081 TYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKRHQA 1118
            TYHPSYFKEDMFYFSFPW VSDVLLNIKA NSKRHQA
Sbjct: 1081 TYHPSYFKEDMFYFSFPWTVSDVLLNIKAMNSKRHQA 1117

[Close]

BLAST of Cmc02g0057821 vs. ExPASy Swiss-Prot
Match: O82504 (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1)

HSP 1 Score: 1377.8 bits (3565), Expect = 0.0e+00
Identity = 677/1116 (60.66%), Postives = 857/1116 (76.79%), Query Frame = 0


Query: 6    RSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKA 65
            RST+++SNVP++ +A +LL FL   LG D+VFA+EI T R NWK R   RVQFTTLE K+
Sbjct: 9    RSTVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKS 68

Query: 66   KAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEE-RMSVLES 125
            +A  LS Q+ L+F T NLR S   DDI+ RPV    R ++ VL VGF   +E R   LE 
Sbjct: 69   RAQLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEK 128

Query: 126  WEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGYCLGEE--KLNALLFKLKYA 185
            W+GV+ WI+ E+RR+EFW+W   +CYK+EV FE+I+ET   C+  +  +++A L KLKY 
Sbjct: 129  WDGVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYG 188

Query: 186  PRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDLQA 245
            P+++K+++  ++A+KF S RYR C ED+D++W+RTT+FS  +S+G ST FC EV      
Sbjct: 189  PKVFKRVT-VHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTM 248

Query: 246  SDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSG-LGSNLAYEVEYQLNSLVHMQK 305
             DIFS  P+Y+E    +   DG+ F S ++IVPL+ +  LG    YE+ +QLN+LVH QK
Sbjct: 249  LDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQK 308

Query: 306  ISL-AAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLKTQLHVFKRNCKSLPL 365
            ISL AA++ +LI  L  + ++TAL +L++LHQ   ICYDP+ F+KTQ+    +  K  P 
Sbjct: 309  ISLFAASDMELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPA 368

Query: 366  SSQKRLS-NNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSK 425
            S+ KRL+  N+M+C R  VTPS+IY LGPELET+NYVVKNF+ + SDFMRVTFVEEDWSK
Sbjct: 369  SAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSK 428

Query: 426  LPAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLAFSASQLRSNSVWMF 485
            LPA A++ + + G   KP RTNIY+R+++IL +GI +G KRFEFLAFSASQLR NSVWMF
Sbjct: 429  LPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMF 488

Query: 486  ASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSD 545
            AS++ +KAE+IR+WMGCF KIRSISKCAARMGQLFS+S QTL+V  QDVE IPDIEV +D
Sbjct: 489  ASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVTTD 548

Query: 546  GIDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDS 605
            G DYCFSDGIGKISL+FA+QVA KCG++H+PSAFQIRYGGYKGVIAVDR+SFRKLSLRDS
Sbjct: 549  GADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSFRKLSLRDS 608

Query: 606  MLKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLKRMLTDK 665
            MLKF+S N+MLNVT+  +SMPC+LNREI+ LLSTLG++D  FEA+Q   L +L  ML D+
Sbjct: 609  MLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDR 668

Query: 666  AVALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPK 725
              ALNVL+ L G +S N+LV+ML  GY P+ EPYLSMML+ H+ +  S+L+SRCRI VPK
Sbjct: 669  DAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPK 728

Query: 726  GRILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKSILIGKVVVTKNPCL 785
            GRIL+GC+DE GIL YGQVY  +TLTK+EL++R+Q+YF  IDE  S++IGKVVVTKNPCL
Sbjct: 729  GRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPCL 788

Query: 786  HPGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDGDLYFISWDENLIPP 845
            HPGD+RVL+AI+ V  EEKG +DC+IFPQKG RPH NECSGGDLDGD +F+SWDE +IP 
Sbjct: 789  HPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIPS 848

Query: 846  KTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAK 905
            + + PMDY G RPR+MDHDVTLEEI KFFVDYMI+DTLG ISTAHLVHADR+P+KA S K
Sbjct: 849  EMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQK 908

Query: 906  CLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAIKS 965
            CLELA LHS AVDFAKTGAPAEMP  LKPREFPDF+ERF+KP YIS +V GKLYRA   S
Sbjct: 909  CLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVKSS 968

Query: 966  IEQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYSAEYEDE 1025
            + Q +     +E      YD  LE  GFE+F+E A+ +++MY EK++ LM YY A  E+E
Sbjct: 969  LAQRKPE---AESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGAANEEE 1028

Query: 1026 ILMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSC-DPHQRRMMASAWY 1085
            IL G L+++  YL RDNR+YGDMKDRI LSVK L KE   WFE SC D  Q++ +ASAWY
Sbjct: 1029 ILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKSCEDEQQKKKLASAWY 1088

Query: 1086 HVTYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKR 1115
            +VTY+P++  E + + SFPW V DVLL+IKA N++R
Sbjct: 1089 YVTYNPNHRDEKLTFLSFPWIVGDVLLDIKAENAQR 1120

[Close]

BLAST of Cmc02g0057821 vs. ExPASy Swiss-Prot
Match: Q7XM31 (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR2 PE=2 SV=1)

HSP 1 Score: 1104.0 bits (2854), Expect = 0.0e+00
Identity = 573/1117 (51.30%), Postives = 769/1117 (68.85%), Query Frame = 0


Query: 7    STLRVSNVPESAIAQDLLNFLNSKLG-PDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKA 66
            ++LRVSN+P SA+A +LL F +S +      FA EI    + W SRG G VQF +  A A
Sbjct: 10   ASLRVSNIPPSAVAAELLAFFDSAVAVAGGAFACEIAAAHRGWLSRGHGTVQFGSAAAAA 69

Query: 67   KAMALSVQNNLV-FGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMSVLES 126
             A  L+    L  F    L  S    D++ R    + R     L VG  + E      ++
Sbjct: 70   AAAGLASSGRLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAGLVVGDRVAERVFEAADA 129

Query: 127  WEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGYCLGEEKLNALLFKLKYAPR 186
            W+GV+A ++P +RR++ ++ H+ + YKLEV+FE++ +  G  L  + + A+L +L YAPR
Sbjct: 130  WDGVRAEVIPGKRRVDLYLEHDSQRYKLEVLFEDMKDCLGCTL--DGMGAILLQLNYAPR 189

Query: 187  IYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDLQASD 246
            I+  ISG  + S+F   R+  C ED  + WVR  +F+P  S G+ ++   ++ +    SD
Sbjct: 190  IHTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALVSD 249

Query: 247  IFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQKISL 306
            I    PF      ++ +   +   ++S +VPL+      ++ YEV ++LNSL+HM KI  
Sbjct: 250  ILKSLPF-SGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIVA 309

Query: 307  AAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLKTQLHVFKRNCK-SLPLSSQ 366
               N DL   L  L +D +  + +++H+L+  CY PL F++ + +  KR+    L    +
Sbjct: 310  KHVNADLFKALQELPVDVSRRIFEKMHKLESTCYGPLQFIQQEAYSMKRSHNVLLSNEGE 369

Query: 367  KRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKLPAG 426
                  +M CYRV +TPS+I+C GPE E +NYVVK+ S+YASDF+RVTFV+EDWSKL + 
Sbjct: 370  GEGERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSN 429

Query: 427  AVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLAFSASQLRSNSVWMFASSD 486
            A++  I++G  SKP++T +Y+RI++IL+ G  IG K FEFLAFSASQLR NSVWMFAS+ 
Sbjct: 430  AISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNA 489

Query: 487  NLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDGIDY 546
            +L A  IR+WMG FE IRS+SKCAARMGQLFSSS QT  V   DVE+IPDIE+ +DG  Y
Sbjct: 490  SLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITTDGSKY 549

Query: 547  CFSDGIGKISLSFARQVADKCGVN--HIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSML 606
             FSDGIGKISL FA++VA   G++  ++PSAFQIRYGGYKGVIA+D  S   LSLR SM 
Sbjct: 550  IFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPSMK 609

Query: 607  KFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLKRMLTDKAV 666
            KFES+++MLN+T    S PCY+NREI++LLSTLG++DE F A+QQ+++   + MLT+K V
Sbjct: 610  KFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEV 669

Query: 667  ALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGR 726
            AL+VL  L G+++    V+ML  GYEP+ EPYLSM+L+AH  N  +D+R+RC+I VPKGR
Sbjct: 670  ALSVLGKLGGSETKT-AVKMLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGR 729

Query: 727  ILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKSILIGKVVVTKNPCLHP 786
            +L+GCLDETG+L YGQVY  IT    E ++ NQ+YF+  D   + ++GKV +TKNPCLHP
Sbjct: 730  VLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLHP 789

Query: 787  GDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDGDLYFISWDENLIPPKT 846
            GD+RVLEAI+  +L   G+VDCL+FPQ+G RPH NECSGGDLDGDLYFI+WD+ LIP K 
Sbjct: 790  GDIRVLEAIYDPDL--VGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKV 849

Query: 847  EAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKCL 906
            + PMDYT  RPRIMDH VTLEEIQK FVDYMIND+LGAISTAHL+HADR P KA S +CL
Sbjct: 850  DTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECL 909

Query: 907  ELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAIKSIE 966
            +LA LHSMAVDFAKTGAPAEMPR L+PRE+PDFMER++KPMYIS+ VLGKLYR+A+  +E
Sbjct: 910  QLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHME 969

Query: 967  QERSRLVWSEEAAR--AIYDHDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYSAEYEDE 1026
            +       S  +A+    YD DLEV G + FL+ AE Y E+Y EK++ LMNYY AE EDE
Sbjct: 970  KSGDSGALSSSSAQPSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDE 1029

Query: 1027 ILMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSCDPHQRRMMASAWYH 1086
            IL G++R++  YL+RDN++Y +MKDRI+ +V +L +E + W  +S        MASAWY 
Sbjct: 1030 ILTGNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWLLSSRKEEDASRMASAWYR 1089

Query: 1087 VTYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKRHQ 1117
            VTYHP   +   F+ SFPW   D LL IKA++  R +
Sbjct: 1090 VTYHPDRRRGKRFW-SFPWIACDNLLAIKASSQLRRR 1119

[Close]

BLAST of Cmc02g0057821 vs. ExPASy Swiss-Prot
Match: Q9LQV2 (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1)

HSP 1 Score: 761.5 bits (1965), Expect = 1.3e-218
Identity = 456/1123 (40.61%), Postives = 653/1123 (58.15%), Query Frame = 0


Query: 8    TLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKAKA 67
            T++V   P    A+++  FL    G  +V+AI++  + K    R    VQFT+ E   + 
Sbjct: 4    TIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKV-RQPKKGGPRVYAIVQFTS-ERHTRL 63

Query: 68   MALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMSVLESWEG 127
            +  +    L +G   L+   +  DIV +P  + +      +  G  +  ++   L S + 
Sbjct: 64   IITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQD 123

Query: 128  VKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGYCLGEEKLNALLFKLKYAPRIYK 187
            V        R++ F     Q+ Y+LE+ +E I +   +         L+ ++  AP+I++
Sbjct: 124  VCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIFE 183

Query: 188  KISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDLQASDIFS 247
            K    +              +  D  W+RTT+F+    +GQST+FC E+   L   D   
Sbjct: 184  K---EDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRE 243

Query: 248  YFPFYKETQ-KDIVLEDGEEFCSTSE-IVPLIKSGLGSNLAYEVEYQLNSLVHMQKISLA 307
             F  Y E +    ++E G  + S +  +VP++    G +L +E+ ++LN+LV    +S  
Sbjct: 244  NFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGP 303

Query: 308  AANQDLIDFLCTLDIDTAL--NVLQRLHQLKFICYDPLSFLKTQLHVFKRNCKSLPLSSQ 367
            A + D    L     D AL  + L++L  L   CY+P  +L+ +   +    K LPLS  
Sbjct: 304  ALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGK-LPLSPT 363

Query: 368  KRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKLPAG 427
              L + ++  YRV VTP+R+Y  GPE+  SN V++++S Y ++F+RV+FV+ED  K+ + 
Sbjct: 364  ISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSM 423

Query: 428  AVT--TSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLAFSASQLRSNSVWMFAS 487
             ++  +S QR       RT +Y RI ++LRDGIVIG K+FEFLAFS+SQLR NS WMFA 
Sbjct: 424  DLSPRSSTQR-------RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAP 483

Query: 488  SDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDGI 547
             D + A  IR WMG F+ IR+++K AAR+GQ FSSS +TL V + ++E+IPD+E+ S G 
Sbjct: 484  IDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGT 543

Query: 548  DYCFSDGIGKISLSFARQVADKCGVNHI-PSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 607
             Y FSDGIGKIS  FAR+VA KCG+    PSAFQIRYGGYKGV+AVD NS +KLSLR SM
Sbjct: 544  RYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSM 603

Query: 608  LKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLKRMLTDKA 667
             KFES+N  L+V       PCY+NR+++TLLSTLGV D  FE  Q+E +  L  +LT   
Sbjct: 604  SKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPL 663

Query: 668  VALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 727
             A   L  +   ++ NIL  ++  GY+P+ EP+LSMMLQ    +   +LR++ RIF+  G
Sbjct: 664  EAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGG 723

Query: 728  RILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKSILIGKVVVTKNPCLH 787
            R ++GCLDET  L YGQV     +  S+     + +         I+ G VVV KNPCLH
Sbjct: 724  RSMMGCLDETRTLEYGQV----VVQYSDPMRPGRRF---------IITGPVVVAKNPCLH 783

Query: 788  PGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDGDLYFISWDENLIPPK 847
            PGDVRVL+A+    L    +VDC++FPQKG RPH NECSG DLDGD+YF+ WD+ L+PP+
Sbjct: 784  PGDVRVLQAVNVPALNH--MVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPR 843

Query: 848  TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKC 907
            T  PMDYT    +I+DHDVT+EE++++F +Y++ND+LG I+ AH   AD+EP KA S  C
Sbjct: 844  TSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPC 903

Query: 908  LELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAIKSI 967
            +ELA   S AVDF KTG  A +P+ L  +E+PDFME+ DKP Y S NV+GKL+R   +  
Sbjct: 904  IELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERA 963

Query: 968  EQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYSAEYEDEI 1027
                S   ++ + A   YD D+EVDGFE +++ A   K  Y  K+  LM+YY  + E EI
Sbjct: 964  PPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEI 1023

Query: 1028 LMGD-LRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSCDPHQRRMMASAWYH 1087
            L G  +R   S+ +R +       + I  +V++LRKE    F  S +       ASAWYH
Sbjct: 1024 LSGGIMRMSKSFTKRRD------AESIGRAVRALRKETLSLFNASEEEENESAKASAWYH 1083

Query: 1088 VTYHPSY---FKEDM---FYFSFPWAVSDVLLNIKATNSKRHQ 1117
            VTYH SY   + E +    + SF W V D L+ IK TN  R Q
Sbjct: 1084 VTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQ 1092

[Close]

BLAST of Cmc02g0057821 vs. ExPASy Swiss-Prot
Match: Q0DXS3 (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2)

HSP 1 Score: 633.3 bits (1632), Expect = 5.4e-180
Identity = 345/741 (46.56%), Postives = 470/741 (63.43%), Query Frame = 0


Query: 381  SRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKLPAGAVTTSIQRGILSKPYRT 440
            S +Y  GPE+  SN VV+NFSS   +F+R++FV+ED  KL A  ++     G      RT
Sbjct: 7    STVYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASG--HDANRT 66

Query: 441  NIYHRIVTILRDGIVIGAKRFEFLAFSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKI 500
             +Y R++++L DGI IG K FEFLAFS+SQLR NS WMFAS   L A +IR WMG F  I
Sbjct: 67   ALYKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNI 126

Query: 501  RSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDGIDYCFSDGIGKISLSFARQV 560
            R+++K AAR+GQ FSSST+TL V   +VE I DI+   +G  + FSDGIGKIS +FA +V
Sbjct: 127  RNVAKYAARLGQSFSSSTETLKVQKYEVEEISDIK---NGTQHVFSDGIGKISSAFANEV 186

Query: 561  ADKCGVNHI-PSAFQIRYGGYKGVIAVDRNSFRKLSLRDSMLKFESKNKMLNVTKCCDSM 620
            A KC +    PSAFQIRYGGYKGV+AVD  S  KLSLR SMLKF+S N  ++V       
Sbjct: 187  AMKCNLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQ 246

Query: 621  PCYLNREIVTLLSTLGVKDESFEALQQEQLHLLKRMLTDKAVALNVLENLHGADSNNILV 680
            P +LNR+++TLLSTLGV+D  FE  Q+E ++ L +M+TD   A+  +E +   +  N + 
Sbjct: 247  PGFLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVK 306

Query: 681  QMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRILLGCLDETGILNYGQVY 740
            ++L  GY+P+ EPYLSM+LQ    +   +L+++ RI +PKGR ++GCLDET  L YGQV+
Sbjct: 307  ELLLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVF 366

Query: 741  ACITLTKSELQNRNQNYFHTIDETKSILIGKVVVTKNPCLHPGDVRVLEAIFHVELEEKG 800
               T   +             D  +  + GKVV+ KNPCLHPGD+R+L A+    L    
Sbjct: 367  IRATSGVN-------------DNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHH-- 426

Query: 801  LVDCLIFPQKGPRPHTNECSGGDLDGDLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDV 860
            + +C++FPQ+GPRPH NECSG DLDGD+YF+SWD +LIPP+   PMDYT      +DHDV
Sbjct: 427  MFNCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDV 486

Query: 861  TLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKCLELAALHSMAVDFAKTGAP 920
            T+EE++++F +Y++N++LG I+ AH+V AD+E  KA S+ C+ELA L S+AVDF KTG P
Sbjct: 487  TIEEVEEYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVP 546

Query: 921  AEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAIKSIEQERSRLVWSEEAARAIYD 980
            A +P  L  +E+PDFME+ DK  Y S  V+GKLYR   K     +    ++ E AR  YD
Sbjct: 547  ALIPPELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTPHIKH---FTREVARRSYD 606

Query: 981  HDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYSAEYEDEILMGDLRSRASYLQRDNRKY 1040
             D+ VDG+E ++  A   K+ Y  K+  LM++Y  + E EI+ G +   A    ++  K 
Sbjct: 607  TDMIVDGYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMA----KNFTKK 666

Query: 1041 GDMKDRILLSVKSLRKEVKEWF------ENSCDPHQRRMMASAWYHVTYHPSYF------ 1100
             D  D I L+V+SLRKE +  F      +N          ASAWYHVTYHP ++      
Sbjct: 667  SD-ADAIRLAVRSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEG 719

Query: 1101 KEDMFYFSFPWAVSDVLLNIK 1109
             E   + SFPW + + LL IK
Sbjct: 727  YERPHFISFPWCIYEKLLRIK 719

[Close]

BLAST of Cmc02g0057821 vs. ExPASy Swiss-Prot
Match: Q9SG02 (RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1)

HSP 1 Score: 538.1 bits (1385), Expect = 2.3e-151
Identity = 378/1122 (33.69%), Postives = 576/1122 (51.34%), Query Frame = 0


Query: 56   VQFTTLEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGV-------- 115
            V F   E+  +AM  + Q NL+   Q L+ SL   +    P     R    V        
Sbjct: 81   VHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKN----PYSLNQRRRTTVPYKLAGIT 140

Query: 116  LHVGFMLKEERMSVLESWEGVKAWIMPERRRIEFW------------IWHEQ-EC-YKLE 175
            L +G ++  +   V    EGV   + P     +F             + H    C YKLE
Sbjct: 141  LEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAVINCDYKLE 200

Query: 176  VMFEEILETTGYCLGEEKLN--ALLFKLKYAPRIYKKISGSNMASKFSSTRYRLCVEDYD 235
            ++  +I     Y    + L+   L+ +L  +PR++ + +  ++            + D D
Sbjct: 201  LLVRDIQTVRQY----KTLHGFVLILQLASSPRVWYRTADDDIYDTVPGD-----LLDDD 260

Query: 236  YLWVRTTEFSPMRSVGQSTSFCWEVEE--DLQASDIFSYFPFYKETQKDIVLED--GEEF 295
              W+RTT+F+ + ++G+  S+   +    + +      YF   +  ++ +        E 
Sbjct: 261  DPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWPPRIRNEP 320

Query: 296  C---STSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQKISLAAANQDLIDFLCTLDIDTAL 355
            C     S+    I    G  +++E+ + +NS++H    +     +   D L     D  +
Sbjct: 321  CFGEPVSDHFFCIHHKEG--ISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQPKDVNI 380

Query: 356  NVLQRLHQLKFICYDPLSFLKTQLHVFKRNCKSLPLSSQKRLSNNVMNCYRVLVTPSRIY 415
              L+ L   K   +D    LK      ++N K L    Q   S ++    R+++TP+R Y
Sbjct: 381  ASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQ---SEDISEIRRLVITPTRAY 440

Query: 416  CLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKLPAGAVT---TSIQRGILSKPY--R 475
            CL PE+E SN V++ + + A  F+RVTF++E    + +  ++     I + + S  +  +
Sbjct: 441  CLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQK 500

Query: 476  TNIYHRIVTILRDGIVIGAKRFEFLAFSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEK 535
            T ++ R+ +IL DG  +  +++ FLAFSA+QLR  S W FA     +  +I+ WMG F K
Sbjct: 501  TYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMGKF-K 560

Query: 536  IRSISKCAARMGQLFSSSTQTLVVPTQDVEI-IPDIEVNSDGIDYCFSDGIGKISLSFAR 595
             ++++KCAARMG  FSS+  T+ V   +V+  +PDIE N     Y FSDGIG I+   A 
Sbjct: 561  DKNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNG----YVFSDGIGTITPDLAD 620

Query: 596  QVAD--KCGVNHIPSAFQIRYGGYKGVIA--VDRNSFRKLSLRDSMLKFESKNKMLNVTK 655
            +V +  K  V++ P A+QIRY G+KGV+A    ++   +L+LRDSM KF SK+ +L +  
Sbjct: 621  EVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEICS 680

Query: 656  CCDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLKRMLTDKAVALNVLENLHGADS 715
                 P +LNR+I+TLLS LGV DE F  +Q+  L+ L R+L D  VA  VL     A+ 
Sbjct: 681  WTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVL-TASCAEQ 740

Query: 716  NNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRILLGCLDETGILN 775
             N    ML+ G++P  EP+L  ML +        LR + RIFV  GR L+GCLDE GIL 
Sbjct: 741  GNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILE 800

Query: 776  YGQVYACITLTKSELQNRNQNYFHTIDETKS---ILIGKVVVTKNPCLHPGDVRVLEAIF 835
            +GQ +  I ++K  ++N    +     ETK+   ++ G V + KNPCLHPGDVR+LEA+ 
Sbjct: 801  HGQCF--IQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVD 860

Query: 836  HVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDGDLYFISWDENLIPP--KTEAPMDYTG 895
              +L    + DCLIFPQKG RPHTNE SG DLDGDLYF++WD+ LIPP  K+   M Y  
Sbjct: 861  VPQLHH--MYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDA 920

Query: 896  RRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKCLELAALHSM 955
               + +   V  ++I  FF   + N+ LG I  AH+VHADR    A+  +CL LA L + 
Sbjct: 921  AEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAAT 980

Query: 956  AVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAIKSIEQERSRLVW 1015
            AVDF KTG    MP  LKP+ +PDFM + D   Y S+ +LG+LYR  +K +  E +    
Sbjct: 981  AVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYR-RVKEVYDEDAEASS 1040

Query: 1016 SE--EAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYSAEYEDEILMGDLRS 1075
             E  + +   YD  LE+ GFE  +  A  +K +Y  ++  L+  Y  + E+EI+ G + S
Sbjct: 1041 EESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWS 1100

Query: 1076 RASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSCDPHQR----------RMMASAW 1109
               Y    ++K G++K+R+  S  SL+KE ++ FE +   H+              ASAW
Sbjct: 1101 MPKY---TSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAW 1160

[Close]

BLAST of Cmc02g0057821 vs. ExPASy TrEMBL
Match: A0A1S3BVE2 (RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103493922 PE=3 SV=1)

HSP 1 Score: 2249.2 bits (5827), Expect = 0.0e+00
Identity = 1116/1117 (99.91%), Postives = 1116/1117 (99.91%), Query Frame = 0


Query: 1    MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
            MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT
Sbjct: 1    MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60

Query: 61   LEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS 120
            LEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS
Sbjct: 61   LEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS 120

Query: 121  VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGYCLGEEKLNALLFKLK 180
            VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGYCLGEEKLNALLFKLK
Sbjct: 121  VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGYCLGEEKLNALLFKLK 180

Query: 181  YAPRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDL 240
            YAPRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDL
Sbjct: 181  YAPRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDL 240

Query: 241  QASDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQ 300
            QASDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQ
Sbjct: 241  QASDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQ 300

Query: 301  KISLAAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLKTQLHVFKRNCKSLPL 360
            KISLAAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLKTQLHVFKRNCKSLPL
Sbjct: 301  KISLAAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLKTQLHVFKRNCKSLPL 360

Query: 361  SSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKL 420
            SSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKL
Sbjct: 361  SSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKL 420

Query: 421  PAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLAFSASQLRSNSVWMFA 480
            PAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLAFSASQLRSNSVWMFA
Sbjct: 421  PAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLAFSASQLRSNSVWMFA 480

Query: 481  SSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540
            SSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG
Sbjct: 481  SSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540

Query: 541  IDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600
            IDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM
Sbjct: 541  IDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600

Query: 601  LKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLKRMLTDKA 660
            LKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLKRMLTDKA
Sbjct: 601  LKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLKRMLTDKA 660

Query: 661  VALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720
            VALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG
Sbjct: 661  VALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720

Query: 721  RILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKSILIGKVVVTKNPCLH 780
            RILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKSILIGKVVVTKNPCLH
Sbjct: 721  RILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKSILIGKVVVTKNPCLH 780

Query: 781  PGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDGDLYFISWDENLIPPK 840
            PGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDGDLYFISWDENLIPPK
Sbjct: 781  PGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDGDLYFISWDENLIPPK 840

Query: 841  TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKC 900
            TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKC
Sbjct: 841  TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKC 900

Query: 901  LELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAIKSI 960
            LELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAIKSI
Sbjct: 901  LELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAIKSI 960

Query: 961  EQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYSAEYEDEI 1020
            EQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKMSILMNYY AEYEDEI
Sbjct: 961  EQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYGAEYEDEI 1020

Query: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSCDPHQRRMMASAWYHV 1080
            LMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSCDPHQRRMMASAWYHV
Sbjct: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSCDPHQRRMMASAWYHV 1080

Query: 1081 TYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKRHQA 1118
            TYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKRHQA
Sbjct: 1081 TYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKRHQA 1117

[Close]

BLAST of Cmc02g0057821 vs. ExPASy TrEMBL
Match: A0A5A7UPU2 (RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G001800 PE=3 SV=1)

HSP 1 Score: 2213.3 bits (5734), Expect = 0.0e+00
Identity = 1106/1132 (97.70%), Postives = 1108/1132 (97.88%), Query Frame = 0


Query: 1    MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
            MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT
Sbjct: 1    MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60

Query: 61   LEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS 120
            LEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS
Sbjct: 61   LEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS 120

Query: 121  VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGYC---------LGEEK 180
            VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGY           G + 
Sbjct: 121  VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGYSGMVPCFTSGFGSKD 180

Query: 181  LNALLF------KLKYAPRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRS 240
                L+       LKYAPRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRS
Sbjct: 181  FFVTLYLVGNLSPLKYAPRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRS 240

Query: 241  VGQSTSFCWEVEEDLQASDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNL 300
            VGQSTSFCWEVEEDLQASDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNL
Sbjct: 241  VGQSTSFCWEVEEDLQASDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNL 300

Query: 301  AYEVEYQLNSLVHMQKISLAAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLK 360
            AYEVEYQLNSLVHMQKISLAAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLK
Sbjct: 301  AYEVEYQLNSLVHMQKISLAAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLK 360

Query: 361  TQLHVFKRNCKSLPLSSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYAS 420
            TQLHVFKRNCKSLPLSSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYAS
Sbjct: 361  TQLHVFKRNCKSLPLSSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYAS 420

Query: 421  DFMRVTFVEEDWSKLPAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLA 480
            DFMRVTFVEEDWSKLPAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLA
Sbjct: 421  DFMRVTFVEEDWSKLPAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLA 480

Query: 481  FSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPT 540
            FSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPT
Sbjct: 481  FSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPT 540

Query: 541  QDVEIIPDIEVNSDGIDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIA 600
            QDVEIIPDIEVNSDGIDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIA
Sbjct: 541  QDVEIIPDIEVNSDGIDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIA 600

Query: 601  VDRNSFRKLSLRDSMLKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQ 660
            VDRNSFRKLSLRDSMLKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQ
Sbjct: 601  VDRNSFRKLSLRDSMLKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQ 660

Query: 661  QEQLHLLKRMLTDKAVALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNL 720
            QEQLHLLKRMLTDKAVALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNL
Sbjct: 661  QEQLHLLKRMLTDKAVALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNL 720

Query: 721  FSDLRSRCRIFVPKGRILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKS 780
            FSDLRSRCRIFVPKGRILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKS
Sbjct: 721  FSDLRSRCRIFVPKGRILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKS 780

Query: 781  ILIGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDG 840
            ILIGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDG
Sbjct: 781  ILIGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDG 840

Query: 841  DLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHL 900
            DLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHL
Sbjct: 841  DLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHL 900

Query: 901  VHADREPKKALSAKCLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYIS 960
            VHADREPKKALSAKCLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYIS
Sbjct: 901  VHADREPKKALSAKCLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYIS 960

Query: 961  SNVLGKLYRAAIKSIEQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKM 1020
            SNVLGKLYRAAIKSIEQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKM
Sbjct: 961  SNVLGKLYRAAIKSIEQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKM 1020

Query: 1021 SILMNYYSAEYEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSC 1080
            SILMNYYSAEYEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSC
Sbjct: 1021 SILMNYYSAEYEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSC 1080

Query: 1081 DPHQRRMMASAWYHVTYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKRHQA 1118
            DPHQRRMMASAWYHVTYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKRHQA
Sbjct: 1081 DPHQRRMMASAWYHVTYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKRHQA 1132

[Close]

BLAST of Cmc02g0057821 vs. ExPASy TrEMBL
Match: A0A5D3BHS8 (RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G001880 PE=3 SV=1)

HSP 1 Score: 2211.8 bits (5730), Expect = 0.0e+00
Identity = 1105/1132 (97.61%), Postives = 1107/1132 (97.79%), Query Frame = 0


Query: 1    MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
            MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT
Sbjct: 1    MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60

Query: 61   LEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS 120
            LEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS
Sbjct: 61   LEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS 120

Query: 121  VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGYC---------LGEEK 180
            VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGY           G + 
Sbjct: 121  VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGYSGMVPCFTSGFGSKD 180

Query: 181  LNALLF------KLKYAPRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRS 240
                L+       LKYAPRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRS
Sbjct: 181  FFVTLYLVGNLSPLKYAPRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRS 240

Query: 241  VGQSTSFCWEVEEDLQASDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNL 300
            VGQSTSFCWEVEEDLQASDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNL
Sbjct: 241  VGQSTSFCWEVEEDLQASDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNL 300

Query: 301  AYEVEYQLNSLVHMQKISLAAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLK 360
            AYEVEYQLNSLVHMQKISLAAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLK
Sbjct: 301  AYEVEYQLNSLVHMQKISLAAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLK 360

Query: 361  TQLHVFKRNCKSLPLSSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYAS 420
            TQLHVFKRNCKSLPLSSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYAS
Sbjct: 361  TQLHVFKRNCKSLPLSSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYAS 420

Query: 421  DFMRVTFVEEDWSKLPAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLA 480
            DFMRVTFVEEDWSKLPAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLA
Sbjct: 421  DFMRVTFVEEDWSKLPAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLA 480

Query: 481  FSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPT 540
            FSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPT
Sbjct: 481  FSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPT 540

Query: 541  QDVEIIPDIEVNSDGIDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIA 600
            QDVEIIPDIEVNSDGIDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIA
Sbjct: 541  QDVEIIPDIEVNSDGIDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIA 600

Query: 601  VDRNSFRKLSLRDSMLKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQ 660
            VDRNSFRKLSLRDSMLKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQ
Sbjct: 601  VDRNSFRKLSLRDSMLKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQ 660

Query: 661  QEQLHLLKRMLTDKAVALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNL 720
            QEQLHLLKRMLTDKAVALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNL
Sbjct: 661  QEQLHLLKRMLTDKAVALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNL 720

Query: 721  FSDLRSRCRIFVPKGRILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKS 780
            FSDLRSRCRIFVPKGRILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKS
Sbjct: 721  FSDLRSRCRIFVPKGRILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKS 780

Query: 781  ILIGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDG 840
            ILIGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDG
Sbjct: 781  ILIGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDG 840

Query: 841  DLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHL 900
            DLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHL
Sbjct: 841  DLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHL 900

Query: 901  VHADREPKKALSAKCLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYIS 960
            VHADREPKKALSAKCLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYIS
Sbjct: 901  VHADREPKKALSAKCLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYIS 960

Query: 961  SNVLGKLYRAAIKSIEQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKM 1020
            SNVLGKLYRAAIKSIEQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKM
Sbjct: 961  SNVLGKLYRAAIKSIEQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKM 1020

Query: 1021 SILMNYYSAEYEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSC 1080
            SILMNYY AEYEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSC
Sbjct: 1021 SILMNYYGAEYEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSC 1080

Query: 1081 DPHQRRMMASAWYHVTYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKRHQA 1118
            DPHQRRMMASAWYHVTYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKRHQA
Sbjct: 1081 DPHQRRMMASAWYHVTYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKRHQA 1132

[Close]

BLAST of Cmc02g0057821 vs. ExPASy TrEMBL
Match: E9NWK9 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_1G005580 PE=2 SV=1)

HSP 1 Score: 2199.1 bits (5697), Expect = 0.0e+00
Identity = 1087/1117 (97.31%), Postives = 1104/1117 (98.84%), Query Frame = 0


Query: 1    MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
            MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT
Sbjct: 1    MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60

Query: 61   LEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS 120
            LEAKAKAM+LSVQN+LVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS
Sbjct: 61   LEAKAKAMSLSVQNSLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS 120

Query: 121  VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGYCLGEEKLNALLFKLK 180
            VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTG+CLGEEKLNALL KLK
Sbjct: 121  VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGHCLGEEKLNALLLKLK 180

Query: 181  YAPRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDL 240
            YAPRIYKKISGSNMAS+FSSTRYRLC+EDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDL
Sbjct: 181  YAPRIYKKISGSNMASRFSSTRYRLCIEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDL 240

Query: 241  QASDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQ 300
            QASDIFS FPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQ
Sbjct: 241  QASDIFSCFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQ 300

Query: 301  KISLAAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLKTQLHVFKRNCKSLPL 360
            KISL+AANQDLIDFLCTLDIDTALNVLQRLHQLKF+CYDPLSFLKTQLHV+KRNCKSLP 
Sbjct: 301  KISLSAANQDLIDFLCTLDIDTALNVLQRLHQLKFVCYDPLSFLKTQLHVYKRNCKSLPP 360

Query: 361  SSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKL 420
            SSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKL
Sbjct: 361  SSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKL 420

Query: 421  PAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLAFSASQLRSNSVWMFA 480
            PAGAVTTSIQRGILSKPYRT IYHRI+T+LRDGIVIGAKRFEFLAFSASQLRSNSVWMFA
Sbjct: 421  PAGAVTTSIQRGILSKPYRTEIYHRIMTVLRDGIVIGAKRFEFLAFSASQLRSNSVWMFA 480

Query: 481  SSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540
            SSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPT+DVEIIPDIEVN+DG
Sbjct: 481  SSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTRDVEIIPDIEVNTDG 540

Query: 541  IDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600
            IDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM
Sbjct: 541  IDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600

Query: 601  LKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLKRMLTDKA 660
            LKFESKNKMLNVTKCCDSMPCYLNREI TLLSTLGVKDESFEALQQEQLHLLKRMLTDK 
Sbjct: 601  LKFESKNKMLNVTKCCDSMPCYLNREIATLLSTLGVKDESFEALQQEQLHLLKRMLTDKD 660

Query: 661  VALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720
            VALNVLEN HGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG
Sbjct: 661  VALNVLENFHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720

Query: 721  RILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKSILIGKVVVTKNPCLH 780
            RILLGCLDETGILNYGQVYACITLTKSELQ+RNQNYFHTIDETKSIL+GKVVVTKNPCLH
Sbjct: 721  RILLGCLDETGILNYGQVYACITLTKSELQSRNQNYFHTIDETKSILLGKVVVTKNPCLH 780

Query: 781  PGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDGDLYFISWDENLIPPK 840
            PGDVRVLEAIFHVELEEKGLVDCLIFPQKG RPHTNECSGGDLDGDLYFISWDENLIPPK
Sbjct: 781  PGDVRVLEAIFHVELEEKGLVDCLIFPQKGARPHTNECSGGDLDGDLYFISWDENLIPPK 840

Query: 841  TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKC 900
            TEAPMDYTGRRPRIMDHDV LEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKC
Sbjct: 841  TEAPMDYTGRRPRIMDHDVKLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKC 900

Query: 901  LELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAIKSI 960
            LELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAA+KSI
Sbjct: 901  LELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAVKSI 960

Query: 961  EQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYSAEYEDEI 1020
            EQERSRLVWSEEAARAIYD+DLEVDGFEAFLEIAETYKEMYIEKMSILMNYY AEYEDEI
Sbjct: 961  EQERSRLVWSEEAARAIYDYDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYGAEYEDEI 1020

Query: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSCDPHQRRMMASAWYHV 1080
            LMGDLRSRASYLQRDNRKYGDMKDRILLSVK+LRKEVKEWFENSCDP  RRMMASAWYHV
Sbjct: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKNLRKEVKEWFENSCDPLNRRMMASAWYHV 1080

Query: 1081 TYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKRHQA 1118
            TYHPSYFKEDMFYFSFPWAVSDVLLNIKA NSKRHQA
Sbjct: 1081 TYHPSYFKEDMFYFSFPWAVSDVLLNIKAMNSKRHQA 1117

[Close]

BLAST of Cmc02g0057821 vs. ExPASy TrEMBL
Match: A0A6J1E171 (RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111429858 PE=3 SV=1)

HSP 1 Score: 2070.8 bits (5364), Expect = 0.0e+00
Identity = 1018/1117 (91.14%), Postives = 1063/1117 (95.17%), Query Frame = 0


Query: 1    MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60
            M QPERSTLRVSNVPESA+A+DLL FL SKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT
Sbjct: 1    MGQPERSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60

Query: 61   LEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMS 120
            LEAK+KA +LSVQNNLVF T NLRFS  NDDI+VRP+H  NRTENGVLHVGFMLKE+ MS
Sbjct: 61   LEAKSKAQSLSVQNNLVFSTHNLRFSETNDDIIVRPIHGRNRTENGVLHVGFMLKEDHMS 120

Query: 121  VLESWEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGYCLGEEKLNALLFKLK 180
            VLESWEGVKAWIMPERRR+EFWIW E ECYKLEVMFEEILETTGYCLG+EKLNALL KLK
Sbjct: 121  VLESWEGVKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCLGDEKLNALLLKLK 180

Query: 181  YAPRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDL 240
            YAPRIYKKISGSNMA KFSS+RYRLC E++DYLW+RTTEFS +RS+GQSTSFCWEVEEDL
Sbjct: 181  YAPRIYKKISGSNMAYKFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDL 240

Query: 241  QASDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQ 300
            QASD+FS FP Y+ET KDI LEDG EF STSE VPLIKSGL SNLAYEV+YQLNSLVHMQ
Sbjct: 241  QASDMFSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNLAYEVQYQLNSLVHMQ 300

Query: 301  KISLAAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLKTQLHVFKRNCKSLPL 360
            KISLAAA+ DLIDFL TL  DTALN+LQRLHQLKFICYDPLSFLKTQLHV KRNCK LP 
Sbjct: 301  KISLAAASNDLIDFLSTLGTDTALNILQRLHQLKFICYDPLSFLKTQLHVLKRNCKVLPS 360

Query: 361  SSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKL 420
             SQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNF+SYASDFMRVTFVEEDWSKL
Sbjct: 361  LSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKL 420

Query: 421  PAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLAFSASQLRSNSVWMFA 480
            PAGAVTTSIQRG+LSKPYRT IYHRIV+ILR+GIVIGAKRFEFLAFSASQLRSNSVWMFA
Sbjct: 421  PAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFA 480

Query: 481  SSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540
            SS+NLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG
Sbjct: 481  SSNNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDG 540

Query: 541  IDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600
            IDYCFSDGIGKISLSFARQVADKCG+ HIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM
Sbjct: 541  IDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 600

Query: 601  LKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLKRMLTDKA 660
            LKFESKNKMLNVTKC DSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLL+RMLTDK 
Sbjct: 601  LKFESKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLRRMLTDKV 660

Query: 661  VALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720
             ALNVLENL+GADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG
Sbjct: 661  AALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 720

Query: 721  RILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKSILIGKVVVTKNPCLH 780
            RILLGCLDETGILNYGQVYACITLTKSEL++RNQNYFH IDETKSIL+GKVVVTKNPCLH
Sbjct: 721  RILLGCLDETGILNYGQVYACITLTKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLH 780

Query: 781  PGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDGDLYFISWDENLIPPK 840
            PGDVRVLEAIFHVELEEKGLVDCLIFPQKG RPHTNECSGGDLDGDLYFISWDENLIPPK
Sbjct: 781  PGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLIPPK 840

Query: 841  TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKC 900
            TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALS+KC
Sbjct: 841  TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKC 900

Query: 901  LELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAIKSI 960
            LELAALHSMAVD+AKTGAPAEMPRVLKPREFPDFMERFDKPMY S+NVLGKLYRAA+K++
Sbjct: 901  LELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTM 960

Query: 961  EQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYSAEYEDEI 1020
            EQERSRLVW+EE A AIYDHDLEVDGFEAFLE AE++K MYIEKMSILMNYY AEYEDEI
Sbjct: 961  EQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDEI 1020

Query: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSCDPHQRRMMASAWYHV 1080
            LMGDLRSRASYLQRDNRKYGDMKDRILLSVK +RKE KEWFENSC PH+ +MMASAWYHV
Sbjct: 1021 LMGDLRSRASYLQRDNRKYGDMKDRILLSVKCVRKEAKEWFENSCAPHEHKMMASAWYHV 1080

Query: 1081 TYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKRHQA 1118
            TYHPSYFK+DMFYFSFPW V DVLLNIKA NSKR +A
Sbjct: 1081 TYHPSYFKQDMFYFSFPWIVHDVLLNIKAMNSKRREA 1117

[Close]

BLAST of Cmc02g0057821 vs. TAIR 10
Match: AT4G11130.1 (RNA-dependent RNA polymerase 2 )

HSP 1 Score: 1377.8 bits (3565), Expect = 0.0e+00
Identity = 677/1116 (60.66%), Postives = 857/1116 (76.79%), Query Frame = 0


Query: 6    RSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKA 65
            RST+++SNVP++ +A +LL FL   LG D+VFA+EI T R NWK R   RVQFTTLE K+
Sbjct: 9    RSTVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKS 68

Query: 66   KAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEE-RMSVLES 125
            +A  LS Q+ L+F T NLR S   DDI+ RPV    R ++ VL VGF   +E R   LE 
Sbjct: 69   RAQLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEK 128

Query: 126  WEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGYCLGEE--KLNALLFKLKYA 185
            W+GV+ WI+ E+RR+EFW+W   +CYK+EV FE+I+ET   C+  +  +++A L KLKY 
Sbjct: 129  WDGVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYG 188

Query: 186  PRIYKKISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDLQA 245
            P+++K+++  ++A+KF S RYR C ED+D++W+RTT+FS  +S+G ST FC EV      
Sbjct: 189  PKVFKRVT-VHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTM 248

Query: 246  SDIFSYFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSG-LGSNLAYEVEYQLNSLVHMQK 305
             DIFS  P+Y+E    +   DG+ F S ++IVPL+ +  LG    YE+ +QLN+LVH QK
Sbjct: 249  LDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQK 308

Query: 306  ISL-AAANQDLIDFLCTLDIDTALNVLQRLHQLKFICYDPLSFLKTQLHVFKRNCKSLPL 365
            ISL AA++ +LI  L  + ++TAL +L++LHQ   ICYDP+ F+KTQ+    +  K  P 
Sbjct: 309  ISLFAASDMELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPA 368

Query: 366  SSQKRLS-NNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSK 425
            S+ KRL+  N+M+C R  VTPS+IY LGPELET+NYVVKNF+ + SDFMRVTFVEEDWSK
Sbjct: 369  SAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSK 428

Query: 426  LPAGAVTTSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLAFSASQLRSNSVWMF 485
            LPA A++ + + G   KP RTNIY+R+++IL +GI +G KRFEFLAFSASQLR NSVWMF
Sbjct: 429  LPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMF 488

Query: 486  ASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSD 545
            AS++ +KAE+IR+WMGCF KIRSISKCAARMGQLFS+S QTL+V  QDVE IPDIEV +D
Sbjct: 489  ASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVTTD 548

Query: 546  GIDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDS 605
            G DYCFSDGIGKISL+FA+QVA KCG++H+PSAFQIRYGGYKGVIAVDR+SFRKLSLRDS
Sbjct: 549  GADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSFRKLSLRDS 608

Query: 606  MLKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLKRMLTDK 665
            MLKF+S N+MLNVT+  +SMPC+LNREI+ LLSTLG++D  FEA+Q   L +L  ML D+
Sbjct: 609  MLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDR 668

Query: 666  AVALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPK 725
              ALNVL+ L G +S N+LV+ML  GY P+ EPYLSMML+ H+ +  S+L+SRCRI VPK
Sbjct: 669  DAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPK 728

Query: 726  GRILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKSILIGKVVVTKNPCL 785
            GRIL+GC+DE GIL YGQVY  +TLTK+EL++R+Q+YF  IDE  S++IGKVVVTKNPCL
Sbjct: 729  GRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPCL 788

Query: 786  HPGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDGDLYFISWDENLIPP 845
            HPGD+RVL+AI+ V  EEKG +DC+IFPQKG RPH NECSGGDLDGD +F+SWDE +IP 
Sbjct: 789  HPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIPS 848

Query: 846  KTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAK 905
            + + PMDY G RPR+MDHDVTLEEI KFFVDYMI+DTLG ISTAHLVHADR+P+KA S K
Sbjct: 849  EMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQK 908

Query: 906  CLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAIKS 965
            CLELA LHS AVDFAKTGAPAEMP  LKPREFPDF+ERF+KP YIS +V GKLYRA   S
Sbjct: 909  CLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVKSS 968

Query: 966  IEQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYSAEYEDE 1025
            + Q +     +E      YD  LE  GFE+F+E A+ +++MY EK++ LM YY A  E+E
Sbjct: 969  LAQRKPE---AESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGAANEEE 1028

Query: 1026 ILMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSC-DPHQRRMMASAWY 1085
            IL G L+++  YL RDNR+YGDMKDRI LSVK L KE   WFE SC D  Q++ +ASAWY
Sbjct: 1029 ILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKSCEDEQQKKKLASAWY 1088

Query: 1086 HVTYHPSYFKEDMFYFSFPWAVSDVLLNIKATNSKR 1115
            +VTY+P++  E + + SFPW V DVLL+IKA N++R
Sbjct: 1089 YVTYNPNHRDEKLTFLSFPWIVGDVLLDIKAENAQR 1120

[Close]

BLAST of Cmc02g0057821 vs. TAIR 10
Match: AT1G14790.1 (RNA-dependent RNA polymerase 1 )

HSP 1 Score: 761.5 bits (1965), Expect = 9.3e-220
Identity = 456/1123 (40.61%), Postives = 653/1123 (58.15%), Query Frame = 0


Query: 8    TLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKAKA 67
            T++V   P    A+++  FL    G  +V+AI++  + K    R    VQFT+ E   + 
Sbjct: 4    TIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKV-RQPKKGGPRVYAIVQFTS-ERHTRL 63

Query: 68   MALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMSVLESWEG 127
            +  +    L +G   L+   +  DIV +P  + +      +  G  +  ++   L S + 
Sbjct: 64   IITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQD 123

Query: 128  VKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGYCLGEEKLNALLFKLKYAPRIYK 187
            V        R++ F     Q+ Y+LE+ +E I +   +         L+ ++  AP+I++
Sbjct: 124  VCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIFE 183

Query: 188  KISGSNMASKFSSTRYRLCVEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDLQASDIFS 247
            K    +              +  D  W+RTT+F+    +GQST+FC E+   L   D   
Sbjct: 184  K---EDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRE 243

Query: 248  YFPFYKETQ-KDIVLEDGEEFCSTSE-IVPLIKSGLGSNLAYEVEYQLNSLVHMQKISLA 307
             F  Y E +    ++E G  + S +  +VP++    G +L +E+ ++LN+LV    +S  
Sbjct: 244  NFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGP 303

Query: 308  AANQDLIDFLCTLDIDTAL--NVLQRLHQLKFICYDPLSFLKTQLHVFKRNCKSLPLSSQ 367
            A + D    L     D AL  + L++L  L   CY+P  +L+ +   +    K LPLS  
Sbjct: 304  ALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGK-LPLSPT 363

Query: 368  KRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKLPAG 427
              L + ++  YRV VTP+R+Y  GPE+  SN V++++S Y ++F+RV+FV+ED  K+ + 
Sbjct: 364  ISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSM 423

Query: 428  AVT--TSIQRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFLAFSASQLRSNSVWMFAS 487
             ++  +S QR       RT +Y RI ++LRDGIVIG K+FEFLAFS+SQLR NS WMFA 
Sbjct: 424  DLSPRSSTQR-------RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAP 483

Query: 488  SDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDGI 547
             D + A  IR WMG F+ IR+++K AAR+GQ FSSS +TL V + ++E+IPD+E+ S G 
Sbjct: 484  IDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGT 543

Query: 548  DYCFSDGIGKISLSFARQVADKCGVNHI-PSAFQIRYGGYKGVIAVDRNSFRKLSLRDSM 607
             Y FSDGIGKIS  FAR+VA KCG+    PSAFQIRYGGYKGV+AVD NS +KLSLR SM
Sbjct: 544  RYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSM 603

Query: 608  LKFESKNKMLNVTKCCDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLKRMLTDKA 667
             KFES+N  L+V       PCY+NR+++TLLSTLGV D  FE  Q+E +  L  +LT   
Sbjct: 604  SKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPL 663

Query: 668  VALNVLENLHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKG 727
             A   L  +   ++ NIL  ++  GY+P+ EP+LSMMLQ    +   +LR++ RIF+  G
Sbjct: 664  EAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGG 723

Query: 728  RILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKSILIGKVVVTKNPCLH 787
            R ++GCLDET  L YGQV     +  S+     + +         I+ G VVV KNPCLH
Sbjct: 724  RSMMGCLDETRTLEYGQV----VVQYSDPMRPGRRF---------IITGPVVVAKNPCLH 783

Query: 788  PGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDGDLYFISWDENLIPPK 847
            PGDVRVL+A+    L    +VDC++FPQKG RPH NECSG DLDGD+YF+ WD+ L+PP+
Sbjct: 784  PGDVRVLQAVNVPALNH--MVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPR 843

Query: 848  TEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKC 907
            T  PMDYT    +I+DHDVT+EE++++F +Y++ND+LG I+ AH   AD+EP KA S  C
Sbjct: 844  TSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPC 903

Query: 908  LELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAIKSI 967
            +ELA   S AVDF KTG  A +P+ L  +E+PDFME+ DKP Y S NV+GKL+R   +  
Sbjct: 904  IELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERA 963

Query: 968  EQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYSAEYEDEI 1027
                S   ++ + A   YD D+EVDGFE +++ A   K  Y  K+  LM+YY  + E EI
Sbjct: 964  PPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEI 1023

Query: 1028 LMGD-LRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSCDPHQRRMMASAWYH 1087
            L G  +R   S+ +R +       + I  +V++LRKE    F  S +       ASAWYH
Sbjct: 1024 LSGGIMRMSKSFTKRRD------AESIGRAVRALRKETLSLFNASEEEENESAKASAWYH 1083

Query: 1088 VTYHPSY---FKEDM---FYFSFPWAVSDVLLNIKATNSKRHQ 1117
            VTYH SY   + E +    + SF W V D L+ IK TN  R Q
Sbjct: 1084 VTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQ 1092

[Close]

BLAST of Cmc02g0057821 vs. TAIR 10
Match: AT3G49500.1 (RNA-dependent RNA polymerase 6 )

HSP 1 Score: 538.1 bits (1385), Expect = 1.7e-152
Identity = 378/1122 (33.69%), Postives = 576/1122 (51.34%), Query Frame = 0


Query: 56   VQFTTLEAKAKAMALSVQNNLVFGTQNLRFSLINDDIVVRPVHATNRTENGV-------- 115
            V F   E+  +AM  + Q NL+   Q L+ SL   +    P     R    V        
Sbjct: 81   VHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKN----PYSLNQRRRTTVPYKLAGIT 140

Query: 116  LHVGFMLKEERMSVLESWEGVKAWIMPERRRIEFW------------IWHEQ-EC-YKLE 175
            L +G ++  +   V    EGV   + P     +F             + H    C YKLE
Sbjct: 141  LEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAVINCDYKLE 200

Query: 176  VMFEEILETTGYCLGEEKLN--ALLFKLKYAPRIYKKISGSNMASKFSSTRYRLCVEDYD 235
            ++  +I     Y    + L+   L+ +L  +PR++ + +  ++            + D D
Sbjct: 201  LLVRDIQTVRQY----KTLHGFVLILQLASSPRVWYRTADDDIYDTVPGD-----LLDDD 260

Query: 236  YLWVRTTEFSPMRSVGQSTSFCWEVEE--DLQASDIFSYFPFYKETQKDIVLED--GEEF 295
              W+RTT+F+ + ++G+  S+   +    + +      YF   +  ++ +        E 
Sbjct: 261  DPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWPPRIRNEP 320

Query: 296  C---STSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQKISLAAANQDLIDFLCTLDIDTAL 355
            C     S+    I    G  +++E+ + +NS++H    +     +   D L     D  +
Sbjct: 321  CFGEPVSDHFFCIHHKEG--ISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQPKDVNI 380

Query: 356  NVLQRLHQLKFICYDPLSFLKTQLHVFKRNCKSLPLSSQKRLSNNVMNCYRVLVTPSRIY 415
              L+ L   K   +D    LK      ++N K L    Q   S ++    R+++TP+R Y
Sbjct: 381  ASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQ---SEDISEIRRLVITPTRAY 440

Query: 416  CLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKLPAGAVT---TSIQRGILSKPY--R 475
            CL PE+E SN V++ + + A  F+RVTF++E    + +  ++     I + + S  +  +
Sbjct: 441  CLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQK 500

Query: 476  TNIYHRIVTILRDGIVIGAKRFEFLAFSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEK 535
            T ++ R+ +IL DG  +  +++ FLAFSA+QLR  S W FA     +  +I+ WMG F K
Sbjct: 501  TYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMGKF-K 560

Query: 536  IRSISKCAARMGQLFSSSTQTLVVPTQDVEI-IPDIEVNSDGIDYCFSDGIGKISLSFAR 595
             ++++KCAARMG  FSS+  T+ V   +V+  +PDIE N     Y FSDGIG I+   A 
Sbjct: 561  DKNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNG----YVFSDGIGTITPDLAD 620

Query: 596  QVAD--KCGVNHIPSAFQIRYGGYKGVIA--VDRNSFRKLSLRDSMLKFESKNKMLNVTK 655
            +V +  K  V++ P A+QIRY G+KGV+A    ++   +L+LRDSM KF SK+ +L +  
Sbjct: 621  EVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEICS 680

Query: 656  CCDSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLKRMLTDKAVALNVLENLHGADS 715
                 P +LNR+I+TLLS LGV DE F  +Q+  L+ L R+L D  VA  VL     A+ 
Sbjct: 681  WTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVL-TASCAEQ 740

Query: 716  NNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRILLGCLDETGILN 775
             N    ML+ G++P  EP+L  ML +        LR + RIFV  GR L+GCLDE GIL 
Sbjct: 741  GNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILE 800

Query: 776  YGQVYACITLTKSELQNRNQNYFHTIDETKS---ILIGKVVVTKNPCLHPGDVRVLEAIF 835
            +GQ +  I ++K  ++N    +     ETK+   ++ G V + KNPCLHPGDVR+LEA+ 
Sbjct: 801  HGQCF--IQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVD 860

Query: 836  HVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDGDLYFISWDENLIPP--KTEAPMDYTG 895
              +L    + DCLIFPQKG RPHTNE SG DLDGDLYF++WD+ LIPP  K+   M Y  
Sbjct: 861  VPQLHH--MYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDA 920

Query: 896  RRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKCLELAALHSM 955
               + +   V  ++I  FF   + N+ LG I  AH+VHADR    A+  +CL LA L + 
Sbjct: 921  AEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAAT 980

Query: 956  AVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAIKSIEQERSRLVW 1015
            AVDF KTG    MP  LKP+ +PDFM + D   Y S+ +LG+LYR  +K +  E +    
Sbjct: 981  AVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYR-RVKEVYDEDAEASS 1040

Query: 1016 SE--EAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYSAEYEDEILMGDLRS 1075
             E  + +   YD  LE+ GFE  +  A  +K +Y  ++  L+  Y  + E+EI+ G + S
Sbjct: 1041 EESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWS 1100

Query: 1076 RASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSCDPHQR----------RMMASAW 1109
               Y    ++K G++K+R+  S  SL+KE ++ FE +   H+              ASAW
Sbjct: 1101 MPKY---TSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAW 1160

[Close]

BLAST of Cmc02g0057821 vs. TAIR 10
Match: AT2G19930.1 (RNA-dependent RNA polymerase family protein )

HSP 1 Score: 134.4 bits (337), Expect = 5.6e-31
Identity = 122/418 (29.19%), Postives = 194/418 (46.41%), Query Frame = 0


Query: 573 FQIRYGGY--KGVIAVD----------RNSFRKLSLRDSMLKFESKNKMLNVTKCCDSMP 632
           F++ Y GY  KG   ++          R S  K+S   S+  F + N +  VT       
Sbjct: 442 FRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKR 501

Query: 633 CYLNREIVTLLSTLGVKDESFEALQQEQLHLLKRMLTDKAVALNVLENLHGADSNNILVQ 692
             L++ +V LLS  G+ +E F  +    L   K +  +K  ALN   N    D  N   Q
Sbjct: 502 TKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYGEMDDQN-AAQ 561

Query: 693 MLNHGY---EPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRILLGCLDETGILNYGQ 752
           M+  G    EP+++ YLS++L+       +DL++  ++ V +   L+G +D TG L   +
Sbjct: 562 MILVGIPLDEPHLKNYLSILLKTEK----NDLKAG-KLPVTESYYLMGTVDPTGALKEDE 621

Query: 753 VYACITLTKSELQNRNQNYFHTIDETKSILIGKVVVTKNPCLHPGDVRVLEAIFHVELEE 812
           V  C+ L   ++                   G+V+V +NP LH GD+ +L+A +   LEE
Sbjct: 622 V--CVILESGQIS------------------GEVLVYRNPGLHFGDIHILKATYVKALEE 681

Query: 813 --KGLVDCLIFPQKGPRPHTNECSGGDLDGDLYFISWD----ENLIPPK-----TEAPMD 872
                   + FPQKGPR   +E +GGD DGD+YFIS +    EN  P +     T     
Sbjct: 682 YVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSEPWVSLTPPSKS 741

Query: 873 YTGRRPRIMDHDVTLEEIQKFFV--DYMINDTLGAISTAHLVHADR---------EPKKA 932
            +GR P  +  +   EE+ + F+   +  ++ +G  + + L   DR         E K  
Sbjct: 742 NSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAE 801

Query: 933 LSAKCLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLY 954
           +  K LEL  ++  A+D  K G    +P  LKP  FP +MER  K  + S+++LG ++
Sbjct: 802 MKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKK--FQSTSILGLIF 831

[Close]

BLAST of Cmc02g0057821 vs. TAIR 10
Match: AT2G19920.1 (RNA-dependent RNA polymerase family protein )

HSP 1 Score: 127.9 bits (320), Expect = 5.2e-29
Identity = 158/602 (26.25%), Postives = 252/602 (41.86%), Query Frame = 0


Query: 438 YRTNIYHRIVTILRDGIVIGAKRFEFLAF----SASQLRSNSVWMF----------ASSD 497
           Y  N Y +   I ++GI++G +R++F  F     A + + NS              ASSD
Sbjct: 263 YCDNPYSKYKEIAKNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGSTASSD 322

Query: 498 N-----LKAEEIRQWMGCFEKIRSISKCAARMGQ--LFSSSTQTLVVPTQDVEI--IPDI 557
                 L    I +    F  + ++   A  M +  L  S T+ L V   ++ +  I DI
Sbjct: 323 MENPYILSGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKKLEVDMTEITVMQIDDI 382

Query: 558 ----EVNSDGID-----YCFSDGIGKISLSFAR---------------QVADKCGVNHIP 617
               + N+D +D        SDG G IS   AR                +   C V   P
Sbjct: 383 HCHDQSNNDVLDKNGKPRIHSDGTGYISEDLARMCPLNIFKGKSMRSNNIQGTC-VQEPP 442

Query: 618 SAFQIRY----GGYKGVIAVDRN-SFRKLSLRDSMLK---------FESKNKMLNVTKCC 677
              QIR        KG+  +++N   + + +R SM+K         F + N +  VT   
Sbjct: 443 LLIQIRMFNDGSAVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTSN 502

Query: 678 DSMPCYLNREIVTLLSTLGVKDESFEALQQEQLHLLKRMLTDKAVALNVLENLHGADSNN 737
                 L++ +V LLS  GV ++ F  +    L   K +      A     +    D  N
Sbjct: 503 PPKRAKLSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKAALHYGNMDDKN 562

Query: 738 ILVQMLNHGY---EPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRILLGCLDETGIL 797
            L QM+  G    EP ++ YLS +L+     L  D     ++ + +   L+G +D TG L
Sbjct: 563 AL-QMIMAGIPLDEPYLKHYLSKLLK-----LEKDDLKAGKLPIDESYYLMGTVDPTGEL 622

Query: 798 NYGQVYACITLTKSELQNRNQNYFHTIDETKSILIGKVVVTKNPCLHPGDVRVLEAIFHV 857
              +V     L KS+                      V+V +NP LH GD+ +L+A +  
Sbjct: 623 KEDEVSG---LAKSQ---------------------DVLVYRNPGLHFGDIHILKATYVK 682

Query: 858 ELEE--KGLVDCLIFPQKGPRPHTNECSGGDLDGDLYFISWDENLI-------PPKTEAP 917
            LE+        + FPQKGPR   +E +GGD DGD+YFIS +  L+       P  + +P
Sbjct: 683 SLEQYVGNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSP 742

Query: 918 MD--YTGRRPRIMDHDVTLEEIQKFFV--DYMINDTLGAISTAHLVHADR---------E 954
               YTGR+P  +  +   EE+ K F+   +  +  +G  + + L   DR         +
Sbjct: 743 RSKIYTGRQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMDRFLTLGDENVK 802

The following BLAST results are available for this feature:

BLAST of Cmc02g0057821 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453109.1	0.0e+00	99.91	PREDICTED: RNA-dependent RNA polymerase 2 [Cucumis melo]	[more]
KAA0057882.1	0.0e+00	97.70	RNA-dependent RNA polymerase 2 [Cucumis melo var. makuwa]	[more]
TYJ98569.1	0.0e+00	97.61	RNA-dependent RNA polymerase 2 [Cucumis melo var. makuwa]	[more]
NP_001267608.1	0.0e+00	97.31	RNA-dependent RNA polymerase 2-like [Cucumis sativus] >ADU77018.1 RNA-dependent ...	[more]
XP_038878920.1	0.0e+00	93.02	RNA-dependent RNA polymerase 2 [Benincasa hispida]	[more]

BLAST of Cmc02g0057821 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82504	0.0e+00	60.66	RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1	[more]
Q7XM31	0.0e+00	51.30	Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947...	[more]
Q9LQV2	1.3e-218	40.61	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1	[more]
Q0DXS3	5.4e-180	46.56	Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947...	[more]
Q9SG02	2.3e-151	33.69	RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1	[more]

BLAST of Cmc02g0057821 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BVE2	0.0e+00	99.91	RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103493922 PE=3 SV=1	[more]
A0A5A7UPU2	0.0e+00	97.70	RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3BHS8	0.0e+00	97.61	RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
E9NWK9	0.0e+00	97.31	RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_1G005580 PE=2 SV=...	[more]
A0A6J1E171	0.0e+00	91.14	RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111429858 PE=3 ...	[more]

BLAST of Cmc02g0057821 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G11130.1	0.0e+00	60.66	RNA-dependent RNA polymerase 2	[more]
AT1G14790.1	9.3e-220	40.61	RNA-dependent RNA polymerase 1	[more]
AT3G49500.1	1.7e-152	33.69	RNA-dependent RNA polymerase 6	[more]
AT2G19930.1	5.6e-31	29.19	RNA-dependent RNA polymerase family protein	[more]
AT2G19920.1	5.2e-29	26.25	RNA-dependent RNA polymerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PFAM	PF05183	RdRP	coord: 378..955 e-value: 8.6E-179 score: 595.9
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PANTHER	PTHR23079	RNA-DEPENDENT RNA POLYMERASE	coord: 4..1116
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..92 e-value: 2.7E-5 score: 26.0
None	No IPR available	PANTHER	PTHR23079:SF5	RNA-DEPENDENT RNA POLYMERASE 2	coord: 4..1116
None	No IPR available	CDD	cd00590	RRM_SF	coord: 9..84 e-value: 1.38874E-5 score: 42.2921
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..90 score: 8.91048
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 3..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0057821.1	Cmc02g0057821.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0010495	long-distance posttranscriptional gene silencing
biological_process	GO:0030422	production of siRNA involved in RNA interference
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0001172	transcription, RNA-templated
cellular_component	GO:0016020	membrane
cellular_component	GO:0031380	nuclear RNA-directed RNA polymerase complex
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0071667	DNA/RNA hybrid binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0003968	RNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding