Cmc02g0056231 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0056231
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr02: 22645487 .. 22647540 (+)
RNA-Seq Expression	Cmc02g0056231
Synteny	Cmc02g0056231

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATTTTAGAAGTACTAGTAACTTCCTCAGCGTCAGTTAAACCAAATATGAACAAGCAGTACCTTCATTTTACTCCATGTGTATAGATATTATGGCATTAAAAACAATGTAACACTCTTTTCAAGGTACATTTTCCTAAACCAACCTGGAATTTTGATCCACCAAAGTTCGACCTTGTTCCTTTTGTCCAATATAATGAAATGACATGTCAGCTGCCATTTTCCTGTATCAGTTTCAGCTAAACACAACAGGGCAAAATCAAAAACCTCTTATTTCTCTGCTGCTAATATTATAAAGGGAAGGAGGGGCAGATGCAAAAGAATGGATAAACAAACATCAATTCATATGCATTAAATTATAGGGCTACATTATCAAAATGCTCTACGCATCCCTTTTTTCGGTTTCTTGACAAAACTCAATCGAATTTGCTTCAGACGTCGCCTCTTTCTCGCCATTTTCTCCGGCAATGTCTCCCTCTTCTTTGCAACCTTCTTTACCTTTGGCTTCTTCATATATTTTGGATCCACCTGATATGCTTTTGGAGTAACTGGTACTCCCCGTTTTTGAGCTTCGTTAAAGAGTGAATTCGCTTTGTCCAAACGATTATGGGCACAAAGTTTTCCCATCAATAGATCATATGTCTTAATCCCAGGTTCACACCCATCCTTCTTCATCTTTGCGAATACAACCAGAGCATGATCAATTCTCTCAATCCCACACAAAATTTTCATAAATTCATAATAAGCCTTCTTATCAAGTGCATCTCCATACCCGACAGACTTCATCCTGTCAATCATTTCATCCCCCTCTCCCGTTCGCGCCGCTTGATACAAACTTCTAATCAATATGAGGAACGTTTCAGCATTGGGATGACATCCCCATTCCCCCATTCGATGAAACAAATTGACTGCATCAGTAGTTCTCCTAATCTTGCACAAATTATTGATCAGCACATTGAAAGTTTCAACATTTCGTGGAACCCCACGACAATCCATTTCCACCAGAATTTCCTCAGCTTCAGAATGAAGTCGAAACGGATCCTTTTTCCTACAAAGTTTGCAAACACAATCAAGTAAAGCATTATATGCCGTTGTCCCTAACTCAAACCCGCCCCTGTACATCTCACCCGCTAGCCTTTTCGCTTCATCAAGTTTCTCATTCACACACCATCCTTTGATCAGAGTATCGCATATTGCTTCATCGGGGAAAAATTCATTAGCCAAGTCTTTGACCATCTTTTCAGCATGGCTCCCGAACCCATTTTCAGAAAGCTTCTCCACTACCATCCTAAGCGATTTTTTATCCCTCTTAAGCCCGTAATTCTTCTCCATCGTCTCAAAAAATGAGATTAACTTAGTGGGTCGCCCAGCACGAGCGAACCGATGAATAGACGACTCAAGGGTTTTAGGCCCATTGATCCCTAAACCTTTCGCAAGGACTTCATGAACCGCATTGAAATCTTTTCTACGACCAAAGTAATCAACAAAATACGATATAGTTTCATCAGTGTGATGAAAATCAGGATTCGATACTAACCATTCGTTAAACCCTAACACTGTCCGGCCAGCTTCCGATGAGAGATTGAGCGTATTACGAACCAACTCCGGATTCGGTTTAACATGCGAAAAGCTAAGTTGAAGACGCTGTGTAATGGGAAGAGGATCCGAATCAGGGTCTTTGAGAAGCTCGGATGCAAGTGATTGCGATGTTTGATCCACGTCATTGTTGCCAGATTCGGAAGAGAAGGAATGAGAAAGTGAGAGATACAAGGGAGAAGAAAACCTTAACGCCGCCCCATGATGTCGGAAATGGTGGAAGAGAGACGTCAAATTTCGATGTAAAAGAACAGTCCTAGCAGAATCGTTCAAGGAATTCGTAGAAGATGAAGATAGAGATCGAAGAAATAAGCTTCGAAGTTGCAGATACGGTAATGGCGGCATTGTTGAGAGCTCCGAGGAGGAAAATAAAAACGGAACTGAGCTCAGAAGAACGCTAATGGAAGGAGGAAGCAAAACGAAAAAAACCTAAGTGACATTTTAGATACTGGGCTGGGC

mRNA sequence

ATATTTTAGAAGTACTAGTAACTTCCTCAGCGTCAGTTAAACCAAATATGAACAAGCAGTACCTTCATTTTACTCCATGTGTATAGATATTATGGCATTAAAAACAATGTAACACTCTTTTCAAGGTACATTTTCCTAAACCAACCTGGAATTTTGATCCACCAAAGTTCGACCTTGTTCCTTTTGTCCAATATAATGAAATGACATGTCAGCTGCCATTTTCCTGTATCAGTTTCAGCTAAACACAACAGGGCAAAATCAAAAACCTCTTATTTCTCTGCTGCTAATATTATAAAGGGAAGGAGGGGCAGATGCAAAAGAATGGATAAACAAACATCAATTCATATGCATTAAATTATAGGGCTACATTATCAAAATGCTCTACGCATCCCTTTTTTCGGTTTCTTGACAAAACTCAATCGAATTTGCTTCAGACGTCGCCTCTTTCTCGCCATTTTCTCCGGCAATGTCTCCCTCTTCTTTGCAACCTTCTTTACCTTTGGCTTCTTCATATATTTTGGATCCACCTGATATGCTTTTGGAGTAACTGGTACTCCCCGTTTTTGAGCTTCGTTAAAGAGTGAATTCGCTTTGTCCAAACGATTATGGGCACAAAGTTTTCCCATCAATAGATCATATGTCTTAATCCCAGGTTCACACCCATCCTTCTTCATCTTTGCGAATACAACCAGAGCATGATCAATTCTCTCAATCCCACACAAAATTTTCATAAATTCATAATAAGCCTTCTTATCAAGTGCATCTCCATACCCGACAGACTTCATCCTGTCAATCATTTCATCCCCCTCTCCCGTTCGCGCCGCTTGATACAAACTTCTAATCAATATGAGGAACGTTTCAGCATTGGGATGACATCCCCATTCCCCCATTCGATGAAACAAATTGACTGCATCAGTAGTTCTCCTAATCTTGCACAAATTATTGATCAGCACATTGAAAGTTTCAACATTTCGTGGAACCCCACGACAATCCATTTCCACCAGAATTTCCTCAGCTTCAGAATGAAGTCGAAACGGATCCTTTTTCCTACAAAGTTTGCAAACACAATCAAGTAAAGCATTATATGCCGTTGTCCCTAACTCAAACCCGCCCCTGTACATCTCACCCGCTAGCCTTTTCGCTTCATCAAGTTTCTCATTCACACACCATCCTTTGATCAGAGTATCGCATATTGCTTCATCGGGGAAAAATTCATTAGCCAAGTCTTTGACCATCTTTTCAGCATGGCTCCCGAACCCATTTTCAGAAAGCTTCTCCACTACCATCCTAAGCGATTTTTTATCCCTCTTAAGCCCGTAATTCTTCTCCATCGTCTCAAAAAATGAGATTAACTTAGTGGGTCGCCCAGCACGAGCGAACCGATGAATAGACGACTCAAGGGTTTTAGGCCCATTGATCCCTAAACCTTTCGCAAGGACTTCATGAACCGCATTGAAATCTTTTCTACGACCAAAGTAATCAACAAAATACGATATAGTTTCATCAGTGTGATGAAAATCAGGATTCGATACTAACCATTCGTTAAACCCTAACACTGTCCGGCCAGCTTCCGATGAGAGATTGAGCGTATTACGAACCAACTCCGGATTCGGTTTAACATGCGAAAAGCTAAGTTGAAGACGCTGTGTAATGGGAAGAGGATCCGAATCAGGGTCTTTGAGAAGCTCGGATGCAAGTGATTGCGATGTTTGATCCACGTCATTGTTGCCAGATTCGGAAGAGAAGGAATGAGAAAGTGAGAGATACAAGGGAGAAGAAAACCTTAACGCCGCCCCATGATGTCGGAAATGGTGGAAGAGAGACGTCAAATTTCGATGTAAAAGAACAGTCCTAGCAGAATCGTTCAAGGAATTCGTAGAAGATGAAGATAGAGATCGAAGAAATAAGCTTCGAAGTTGCAGATACGGTAATGGCGGCATTGTTGAGAGCTCCGAGGAGGAAAATAAAAACGGAACTGAGCTCAGAAGAACGCTAATGGAAGGAGGAAGCAAAACGAAAAAAACCTAAGTGACATTTTAGATACTGGGCTGGGC

Coding sequence (CDS)

ATGATCAATTCTCTCAATCCCACACAAAATTTTCATAAATTCATAATAAGCCTTCTTATCAAGTGCATCTCCATACCCGACAGACTTCATCCTGTCAATCATTTCATCCCCCTCTCCCGTTCGCGCCGCTTGATACAAACTTCTAATCAATATGAGGAACGTTTCAGCATTGGGATGACATCCCCATTCCCCCATTCGATGAAACAAATTGACTGCATCAGTAGTTCTCCTAATCTTGCACAAATTATTGATCAGCACATTGAAAGTTTCAACATTTCGTGGAACCCCACGACAATCCATTTCCACCAGAATTTCCTCAGCTTCAGAATGAAGTCGAAACGGATCCTTTTTCCTACAAAGTTTGCAAACACAATCAAGTAA

Protein sequence

MINSLNPTQNFHKFIISLLIKCISIPDRLHPVNHFIPLSRSRRLIQTSNQYEERFSIGMTSPFPHSMKQIDCISSSPNLAQIIDQHIESFNISWNPTTIHFHQNFLSFRMKSKRILFPTKFANTIK

Homology

[Close]

BLAST of Cmc02g0056231 vs. NCBI nr
Match: KAF4382079.1 (hypothetical protein F8388_001224 [Cannabis sativa])

HSP 1 Score: 115.5 bits (288), Expect = 3.2e-22
Identity = 62/126 (49.21%), Postives = 79/126 (62.70%), Query Frame = 0


Query: 1   MINSLNPTQNFHKFIISLLIKCISIPDRLHPVNHFIPLSRSRRLIQTSNQYEERFSIGMT 60
           MI+SLN TQN  K +I LL+K  +I  RLH +NHFIP S SR L + S      F I +T
Sbjct: 165 MIDSLNSTQNLQKTVILLLVKQFTISCRLHSINHFIPFSNSRSLNKIS------FCIWIT 224

Query: 61  SPFPHSMKQIDCISSSPNLAQIIDQHIESFNISWNPTTIHFHQNFLSFRMKSKRILFPTK 120
           +P  HS+K    I S PNL QI+DQH E  ++SW+   +H  ++  +  MK KRILFP  
Sbjct: 225 TPLAHSIKHFQGIFSFPNLTQIVDQHKECLSVSWSSIHVHIKKHLFNLGMKLKRILFPAY 284

Query: 121 FANTIK 127
           FANTIK
Sbjct: 285 FANTIK 284

[Close]

BLAST of Cmc02g0056231 vs. ExPASy TrEMBL
Match: A0A0A0LRY1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015730 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 4.2e-60
Identity = 118/126 (93.65%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 1   MINSLNPTQNFHKFIISLLIKCISIPDRLHPVNHFIPLSRSRRLIQTSNQYEERFSIGMT 60
           MINSLNPTQN HK IISLLIKCISI DRLHPVNHFIPL RS RLIQTSNQYEERFSIGMT
Sbjct: 1   MINSLNPTQNIHKLIISLLIKCISISDRLHPVNHFIPLPRSCRLIQTSNQYEERFSIGMT 60

Query: 61  SPFPHSMKQIDCISSSPNLAQIIDQHIESFNISWNPTTIHFHQNFLSFRMKSKRILFPTK 120
           SPFPHSMKQI+CISSSPNLAQIIDQHIESF+ISWNPTTIHFHQNFLSFR+KSKRILFPTK
Sbjct: 61  SPFPHSMKQINCISSSPNLAQIIDQHIESFDISWNPTTIHFHQNFLSFRIKSKRILFPTK 120

Query: 121 FANTIK 127
           FANTIK
Sbjct: 121 FANTIK 126

[Close]

BLAST of Cmc02g0056231 vs. ExPASy TrEMBL
Match: A0A7J6GIX1 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_001224 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 62/126 (49.21%), Postives = 79/126 (62.70%), Query Frame = 0


Query: 1   MINSLNPTQNFHKFIISLLIKCISIPDRLHPVNHFIPLSRSRRLIQTSNQYEERFSIGMT 60
           MI+SLN TQN  K +I LL+K  +I  RLH +NHFIP S SR L + S      F I +T
Sbjct: 165 MIDSLNSTQNLQKTVILLLVKQFTISCRLHSINHFIPFSNSRSLNKIS------FCIWIT 224

Query: 61  SPFPHSMKQIDCISSSPNLAQIIDQHIESFNISWNPTTIHFHQNFLSFRMKSKRILFPTK 120
           +P  HS+K    I S PNL QI+DQH E  ++SW+   +H  ++  +  MK KRILFP  
Sbjct: 225 TPLAHSIKHFQGIFSFPNLTQIVDQHKECLSVSWSSIHVHIKKHLFNLGMKLKRILFPAY 284

Query: 121 FANTIK 127
           FANTIK
Sbjct: 285 FANTIK 284

The following BLAST results are available for this feature:

BLAST of Cmc02g0056231 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4382079.1	3.2e-22	49.21	hypothetical protein F8388_001224 [Cannabis sativa]	[more]

BLAST of Cmc02g0056231 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc02g0056231 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRY1	4.2e-60	93.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015730 PE=4 SV=1	[more]
A0A7J6GIX1	1.6e-22	49.21	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_001224 PE=4 SV=1	[more]

BLAST of Cmc02g0056231 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0056231.1	Cmc02g0056231.1	mRNA