Cmc02g0053951 (gene) Melon (Charmono) v1.1

Overview
NameCmc02g0053951
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionDefensin-like protein 3
LocationCMiso1.1chr02: 21251183 .. 21251815 (+)
RNA-Seq ExpressionCmc02g0053951
SyntenyCmc02g0053951
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAAAATGAAAGGAAATGAGGTAGTGGATCACAATATATAAGCAGGGCATGCATTGGATTAAAGCACAAGAAACTGAAAGATTAAGAAGAGAAAGACATGGCAGGAGAATGGAGAAAACTCACATTAGTGGCATTTATCTTTCTAGCCATTGCTTCTGGTACGTACTCAATCTGATGCCATTTTTTCATGTGATCATTTCCAAAATAAAAATAGAGATTATTAACAGAATCATCAATATGTTGCGTTGGTTGTTACTTACAGGATGGATGATGGTGGAGACGGAAGGAAAGCTTTGCTTCAAGCGGATCCCGAAGTTCAAGGGAAGGTGTAATTCAAATGCTGTATGTACCAAAGCTTGCAATACCGGAATGAAAGGAATTTGCTCGAATGTTTTTTATTGCATTTGTACCATCATTTGTTGACTTTGTCATTGTAATCATGTTTTACAGTTTTAATCTGCATGGTTTAAAATTAACAGAAGTTGTTATCTTTGAAATGATCAATAAATAAGTTGTTGATCGCCGCTGTTCAACTATGGTAGCATGCACATATGTTTACACATTCGTAGCCTTCCTCTTCCCATCTCCCATTTCATCATTTTCTCTCGAACTTAAAAAAGAAATCAAGTTTC

mRNA sequence

ATTAAAATGAAAGGAAATGAGGTAGTGGATCACAATATATAAGCAGGGCATGCATTGGATTAAAGCACAAGAAACTGAAAGATTAAGAAGAGAAAGACATGGCAGGAGAATGGAGAAAACTCACATTAGTGGCATTTATCTTTCTAGCCATTGCTTCTGGATGGATGATGGTGGAGACGGAAGGAAAGCTTTGCTTCAAGCGGATCCCGAAGTTCAAGGGAAGGTGTAATTCAAATGCTGTATGTACCAAAGCTTGCAATACCGGAATGAAAGGAATTTGCTCGAATGTTTTTTATTGCATTTGTACCATCATTTGTTGACTTTGTCATTGTAATCATGTTTTACAGTTTTAATCTGCATGGTTTAAAATTAACAGAAGTTGTTATCTTTGAAATGATCAATAAATAAGTTGTTGATCGCCGCTGTTCAACTATGGTAGCATGCACATATGTTTACACATTCGTAGCCTTCCTCTTCCCATCTCCCATTTCATCATTTTCTCTCGAACTTAAAAAAGAAATCAAGTTTC

Coding sequence (CDS)

ATGGCAGGAGAATGGAGAAAACTCACATTAGTGGCATTTATCTTTCTAGCCATTGCTTCTGGATGGATGATGGTGGAGACGGAAGGAAAGCTTTGCTTCAAGCGGATCCCGAAGTTCAAGGGAAGGTGTAATTCAAATGCTGTATGTACCAAAGCTTGCAATACCGGAATGAAAGGAATTTGCTCGAATGTTTTTTATTGCATTTGTACCATCATTTGTTGA

Protein sequence

MAGEWRKLTLVAFIFLAIASGWMMVETEGKLCFKRIPKFKGRCNSNAVCTKACNTGMKGICSNVFYCICTIIC
Homology
BLAST of Cmc02g0053951 vs. NCBI nr
Match: KAA0062794.1 (defensin-like protein 3 [Cucumis melo var. makuwa] >TYJ96759.1 defensin-like protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 5.6e-19
Identity = 49/75 (65.33%), Postives = 58/75 (77.33%), Query Frame = 0

Query: 1  MAGEWRKLTLVAFIFLAIASGWMMVETEGKLCFKRIPKFKGRCNSNAVCTKACNTGM--K 60
          MAG W+KLT VAF+FL+IASGWMM ETEGK+CFK+ P FKG+C SN  C KAC+  M   
Sbjct: 1  MAGRWKKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMWYN 60

Query: 61 GICSNVFYCICTIIC 74
          G+CSN   CICT+IC
Sbjct: 61 GVCSNGL-CICTVIC 74

BLAST of Cmc02g0053951 vs. NCBI nr
Match: KGN44293.1 (hypothetical protein Csa_016568 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-16
Identity = 51/76 (67.11%), Postives = 57/76 (75.00%), Query Frame = 0

Query: 1  MAGEWRKLTLVAFIF-LAIASGWMMVETEGKLCFKRIPKFKGRCNSNAVCTKACNTGM-- 60
          MAG W+KLT VAFIF LAIASGWMMVET GK+CFK+   FKG+C SN  C KAC+T M  
Sbjct: 1  MAGGWKKLTFVAFIFLLAIASGWMMVETAGKICFKQSRSFKGKCISNDECVKACDTDMWY 60

Query: 61 KGICSNVFYCICTIIC 74
           G CSN   CICT+IC
Sbjct: 61 DGFCSNGL-CICTVIC 75

BLAST of Cmc02g0053951 vs. NCBI nr
Match: XP_038887289.1 (defensin-like protein 2 [Benincasa hispida])

HSP 1 Score: 91.3 bits (225), Expect = 3.8e-15
Identity = 47/76 (61.84%), Postives = 55/76 (72.37%), Query Frame = 0

Query: 1  MAGE-WRKLTLVAFIFLAIASGWMMVETEGKLCFKRIPKFKGRCNSNAVCTKACNTGM-- 60
          MAGE WRKLT+V FIFLA+ASGWM+VETEGK CFK+ P F+G+C SN  C  AC+  M  
Sbjct: 1  MAGEGWRKLTVVLFIFLALASGWMVVETEGKTCFKQSPSFRGQCTSNNECVGACDNDMWY 60

Query: 61 KGICSNVFYCICTIIC 74
           G CSN   CIC + C
Sbjct: 61 NGYCSNGL-CICAVHC 75

BLAST of Cmc02g0053951 vs. NCBI nr
Match: AHA50469.1 (defensin-like protein 3 [Citrullus lanatus])

HSP 1 Score: 79.3 bits (194), Expect = 1.5e-11
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 0

Query: 1  MAG--EWRKLTLVAFIFLAIASGWMMVETEGKLCFKRIPKFKGRCNSNAVCTKACNTGMK 60
          MAG  EWRKLT+V FIFL++ASGWM+ ETEG+ C++  P FKGRC+S+  C   C+    
Sbjct: 1  MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCD---- 60

Query: 61 GICSNVFYCICTIIC 74
          G C N   CICT+ C
Sbjct: 61 GFC-NHGSCICTVPC 70

BLAST of Cmc02g0053951 vs. NCBI nr
Match: XP_031744629.1 (defensin-1-like [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 4.0e-09
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 0

Query: 1  MAGE-WRKLTLVAFIFLAIASGWMMVETEGKLCFKRIPKFKGRCNSNAVCTKACNTGMKG 60
          M GE WRKLT+V FI L++ASGWM+ ETEG++C++  P+ KG C+SN  C   C+    G
Sbjct: 1  MVGEGWRKLTVVLFILLSLASGWMVAETEGRVCYRPSPRLKGVCSSNDDCIAVCD----G 60

Query: 61 ICSNVFYCICTIIC 74
           CS+   C+C + C
Sbjct: 61 FCSH-GKCMCEVPC 69

BLAST of Cmc02g0053951 vs. ExPASy TrEMBL
Match: A0A5D3BCI9 (Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00530 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.7e-19
Identity = 49/75 (65.33%), Postives = 58/75 (77.33%), Query Frame = 0

Query: 1  MAGEWRKLTLVAFIFLAIASGWMMVETEGKLCFKRIPKFKGRCNSNAVCTKACNTGM--K 60
          MAG W+KLT VAF+FL+IASGWMM ETEGK+CFK+ P FKG+C SN  C KAC+  M   
Sbjct: 1  MAGRWKKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMWYN 60

Query: 61 GICSNVFYCICTIIC 74
          G+CSN   CICT+IC
Sbjct: 61 GVCSNGL-CICTVIC 74

BLAST of Cmc02g0053951 vs. ExPASy TrEMBL
Match: A0A0A0K447 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G239060 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.7e-17
Identity = 51/76 (67.11%), Postives = 57/76 (75.00%), Query Frame = 0

Query: 1  MAGEWRKLTLVAFIF-LAIASGWMMVETEGKLCFKRIPKFKGRCNSNAVCTKACNTGM-- 60
          MAG W+KLT VAFIF LAIASGWMMVET GK+CFK+   FKG+C SN  C KAC+T M  
Sbjct: 1  MAGGWKKLTFVAFIFLLAIASGWMMVETAGKICFKQSRSFKGKCISNDECVKACDTDMWY 60

Query: 61 KGICSNVFYCICTIIC 74
           G CSN   CICT+IC
Sbjct: 61 DGFCSNGL-CICTVIC 75

BLAST of Cmc02g0053951 vs. ExPASy TrEMBL
Match: W5RQN1 (Defensin-like protein 3 OS=Citrullus lanatus OX=3654 GN=PDF2.3 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.2e-12
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 0

Query: 1  MAG--EWRKLTLVAFIFLAIASGWMMVETEGKLCFKRIPKFKGRCNSNAVCTKACNTGMK 60
          MAG  EWRKLT+V FIFL++ASGWM+ ETEG+ C++  P FKGRC+S+  C   C+    
Sbjct: 1  MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCD---- 60

Query: 61 GICSNVFYCICTIIC 74
          G C N   CICT+ C
Sbjct: 61 GFC-NHGSCICTVPC 70

BLAST of Cmc02g0053951 vs. ExPASy TrEMBL
Match: A0A5D3BEY4 (Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00520 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 0

Query: 6  RKLTLVAFIFLAIASGWMMVETEGKLCFKRIPKFKGRCNSNAVCTKACNTGMKGICSNVF 65
          RKLT+V  I L++ASGWM+ ETEG++CF+  P  KG C+S+  C   C+    G CS + 
Sbjct: 7  RKLTVVLVILLSVASGWMVAETEGRVCFRPRPTLKGVCSSDEDCIAVCD----GFCS-LG 66

Query: 66 YCICTIIC 74
           C+C + C
Sbjct: 67 KCMCAVPC 69

BLAST of Cmc02g0053951 vs. ExPASy TrEMBL
Match: A0A6J1EUK4 (defensin Tk-AMP-D4-like OS=Cucurbita moschata OX=3662 GN=LOC111438039 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 37/77 (48.05%), Postives = 44/77 (57.14%), Query Frame = 0

Query: 1  MAGE-WRKLTLVAFIFLAIASGWMMVETEGKLCFKRIPKFKGRCNSNAVCTKACNT---G 60
          MAG+  R L +V FIFLA+ASGWM+V+TEG+ C+K    F G C S A C   C T    
Sbjct: 1  MAGQSLRNLKVVVFIFLALASGWMVVQTEGRTCYKHNDAFIGSCTSTAACADFCITFEGW 60

Query: 61 MKGICSNVFYCICTIIC 74
            G CS    C CT  C
Sbjct: 61 DDGFCSG-DKCTCTKQC 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0062794.15.6e-1965.33defensin-like protein 3 [Cucumis melo var. makuwa] >TYJ96759.1 defensin-like pro... [more]
KGN44293.11.2e-1667.11hypothetical protein Csa_016568 [Cucumis sativus][more]
XP_038887289.13.8e-1561.84defensin-like protein 2 [Benincasa hispida][more]
AHA50469.11.5e-1154.67defensin-like protein 3 [Citrullus lanatus][more]
XP_031744629.14.0e-0948.65defensin-1-like [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BCI92.7e-1965.33Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K4475.7e-1767.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G239060 PE=4 SV=1[more]
W5RQN17.2e-1254.67Defensin-like protein 3 OS=Citrullus lanatus OX=3654 GN=PDF2.3 PE=2 SV=1[more]
A0A5D3BEY42.0e-0645.59Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1EUK42.0e-0648.05defensin Tk-AMP-D4-like OS=Cucurbita moschata OX=3662 GN=LOC111438039 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036574Knottin, scorpion toxin-like superfamilyGENE3D3.30.30.10coord: 24..73
e-value: 1.3E-5
score: 26.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc02g0053951.1Cmc02g0053951.1mRNA