Cmc02g0052601 (gene) Melon (Charmono) v1.1

Overview
NameCmc02g0052601
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionSmall nuclear ribonucleoprotein E
LocationCMiso1.1chr02: 20026810 .. 20031613 (+)
RNA-Seq ExpressionCmc02g0052601
SyntenyCmc02g0052601
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAAGTACATAGAGAGAGATAAAAATGTGCCGCGAGGGGTCTTTACAATTTAAATAAAACTGGGTTAGGGTTTCGTTTCTCATATCCCCGAAGATCCTCTTTACATTTTCGATAGCCATGGCGAGCACCAAAGTGCAGAGGATTATGACCCAGCCCATTGTAAGCTCACTATAATGTATTCATTTTTCTTACTCATTTATCTATTTCTGTGCTTTACTTATAGTTTCCGTATGTGTCACCTTTTTGTTTTTACTCGATCCCGGTGTCGCTGCTGCTTCCTTGGAACTAGAACTTGATTTTCAGGTTTCTTCAAAGTGTAAGAAACTTACTCCAAATTTTGGTTACTTACCTTTTCTGGTCTAGTTTTGTTTTTCTAATTCGAGTTTTTTTGAAACCATTGCAGAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAGGACCTTAGGATTGAAGGCCGAATTATCGTAAGATTTTCTTTTTTTTTGCTATTAACGTAATGGGGATATTTTGATTTTAGTTCTCTTCATAGTTGGATGGATGGATGGATGCAATTTACTTTCCCATGTGCTTGCTTCTCACAGTAATTCTATTTTTTCAGTCTAGCAAAAAGGACATCAATGTGTTTAAAGTTCTTCCATGTTCTTGCTAAGGGAATTGAACTTCTACTCCACAATCTTATGATGAACTCAACTTGGGTCAAGTTGAATTTGAATCTAATCGAATTAATTGGGATGTCTTCAAGATTGTGTTAACTGTTTTAGTATTTTGATTGCCTTTTACATTGCTATCAAGAGGTAAAACACATGGTGGAAATTGGTTGAAATCTGAGACATAGCTTGAAATTGCTACTTCTGTAGGCTACCAACTAACTCGCCCTAGAAATAGGAATGGACTGTAGTGGTTCTAATTTCTCATTTCTGTAGCTAGTGATAATTAGTTGGGTCCCAGTCTAAGATAGATTGAGTCTCTAATGGAAAATTTTCCATGGTTAAACTTGTATATCAGTATTTAGTTCAATTCAACCAGACCATTGGGATCACCAAAACTAAACTTTGTTTCGACGAAGCCTCAAATAATGCCAAGGGCAGTGATCAATTACTTCTATGATTTGCAGTATTCTTTAAGAAATTGGTTCCTCTTCTGTTGTTAGACACACCTTGAAATGTACGTTCTAAGAGATGTCCCTTGCCTTCGGATTCATTACCATCTGTTTATACCTCCTTGAAGTTAGTTTATTCTTCCACATAAGATTGTATGCTGTTTTCCTATACGGATTTAAGCTTCTGTCTCTTTTATGGAAAAATTCTCTCTATTAATCTTTGAATCATTCTGACCAGTTCAGCCAAAAACTTTTCCTGATTGAATGTTGTTTTCAGAATTCTGACAGAGCATATTTGGTTTCATTAATTCCTCATGTGAATTGAATGAATCAAGTCTTTAGTCTCTTCACTTTGGATATTTAATTGTCTGGAGTTTTTTTTATAATTTTTTTAATTTAATGAAAAACACACCTTTCATTGAGAAAGAATGAAAGAATACACGGGCACAAAAAAAAAAAAAAAAAGAACCAAGCCTACAAAAAGAGGAATCCCACTATAAGAAGGGACGACAACTATACAAAATCAAGCTCATAGAATTGGAGTAGCGAATTGCATGTTCTTTTTGCCTACTTCCACATTATTGCGATTTAATACTTAGTTGCTCTTTTGCATCTATTACTTCTAATTTGTAAGCAAGTAAAAAGCTGTAGCCATAAAGTCCATGATGCACTTTTTCAAAGATTGTGGGTGGTTGTACTGTTAGTAATGTAGCATACCCTGCATAGATCATGTTCTTCCATTATATCTCATTATGTAGTCCAATGAGCTAATTAGCGTGTAAATAGTCTGCTGCATAGATTGTGATGTGTTCTCAGCATCCTTCTTATCTTTTAAGTCATGGAGACCCTTTGCTAGGACTACAATTTTCATTGTTGAGTGAATAACCCTTGGGCTTGGGCTTTTTCTTCCTGTTTAAATTTCTTATTTCATACGATATATGGAACTGTTCCTTACCCTAAAAAGTTATTTGGTCAACTACTTTTCCCAATAATCTAATAATGTTCATGTAGTTTTTTTCAACTATTTGCTTTGCCTAAGATTCTGTAAATACACGCAGGAGTGTGTTTAAATACACGCAGGAGTGTGTTTATGCTTTATGGCATTATATTGTATTTGAAAATTTAATTTTCTTGTTTTATCGTTTGTTGTCAACTTGTAAGTACCCATGTTTTGGCTGACTAATTAATGTTGTTTTAACTTATAAGGGAGGTAGTTAGAGGAAGCTGATCCTTTTTCGTCATTAAATTGATTATATTTTCTTGGTCGTATAGGGATTTGATGAGTACATGAACTTAGTGCTTGATGATGCTGAGGAAGTTAATGTTAAGAAAAAGAGTAAAAAGGCACTTGGTATGGTCTTCTCTCCCCCTTGTCTGCTGTTGTTTTTTTTCTATATTTCAATGACAATGTTATCTGAAATGCCTTTTTTATGTCCCTTCAGGGAGGATTCTTCTCAAGGGAGACAATATTACATTAATGATGAACGCGTAAGTGAAACAAACTTGCCTTTCCTCTCCATTTCCGTACACCAACTAACTTCCTTTCCTTTTCTTTTTTTAGGGGAAAATGATGATCATCCAGCAGAACACATTATTGAGATAAAGTTTTCACTTTCATTGTATGGTGCTATAGCTTTTACAACTACCTTCTGTTTGGAGTTGTATCTTTCAACGTTTTAAGCCATCAATGATTAACTAGTTCTTTGGATGTATGATGTTATATTGCTGTTGATAGGTAACATTCTGGCGGTGAAGCCTTTACAATTACCTTCTGTTGTGAGGTTGTTTCTTTCAACGTTTTAAGTCATCGCTGATTAGCAAGTTCTTTGGATGTCTAGTGTAATGTTATATTGCTGTTGGTAGGTTATCCATATATGTGAACACCTTTTAGTTTATCATTGTTATAATTGGTTGTTTACACCAACCAATCCTTGAAACTATGAATTTGGTTCTTTGAATCATAAACTATAAATAGTGGAGCACCTTTGAGAACGTTCGGTTTATTTTGAGAGGGATGGTGGTTGCCCTGAATTCTGATTGTCTTCATTCTCGGAGAAATAAGTGTCACCCTTCTTATCCTGTAGAAGATTGATTACCAACTTATGTTGTGACGATCTGTTCTAAATATTACTTTTTAGAGTATTTTGTTGCAATTTTAAAGAAAAACTTACGTGCGGACATCTTTGCTTAAGGCAACTGTTCTGGGTATATATCCATAGACTTAATATTGGGCCAAGCTCTCCAGCAGTAGTATGAGTATCTAAGTTCAAGCCATTATCCAGGAAGGATAGAAAACCACTTAACAAGAGGCCCATAGGCAGTGTTGGGTGTGGGGTACTAAATCATTCCCTTTATGATCAAATATATGTATATGAGCAATAAATCTAATACAGTGCTGGTTCTGCCTTTGTCGTTTTTACATGATGTAGGCAATCATGAAGTTGGAAAGGGGAAGGTGAAGCAGATAAAAGGTAGACATCCATTAGTAGACTTCTGGTGATAAAAGGCATATCTGAGCACCAGGGTGTGGGAAGAAAGATTGGACTACGAACGAAGCCAAGAGAAGGTGGTGGTGGCCGGTGGGACACACGTGGGGTCAGGGAATCACACCCTTCTAGCTCGTTTAACCATTGTCTTGATGTCTTCTGCTTGCAATTGGCAGTATGAGAAAAGGCATGTCTACCCTTGAGTTGGAAAACGAGTGCGCCATCGCATTTGTTCTTCTTTTGCATTTATTGGTTACTGACTCATCTTCCACACTTATCATTTCTCTTCCTCTCTCCTCCTTGGGTGCAAATAAGCCACTCCATTCCATTTGGTGCTTTCTTTGACACATTCCATAACCCCTGATTTCCTTCTCATGATTGGAGAAATGCATGATTGTTTCACAGTGCTTGACACAACATGAAAACATCACTATTCTTTTATTTTTACTTTCTTATCAATTGTGTTGAACTTAACCTTGGTTCTCTTCTACCTCTAGCAGGTCACTTTTCGATTAAGTTATTTGGCAATTTTGGGATAGGAATTTGTTAATCATAGGTCGTGACCTAATACGATTCTGGCACTCCCGATTCTTTGGGAAGCCTGGCTGTCAACGATGCCTTTACCCATGTGAGTTTTGGGTATACTTTCTCCAGAATGGGGTACTCAAATAGTACACTAGCAGCTATAAAAGATAAATGCCCTTTGAAACTTTTTGAAGACATAGCCTTGTCGCGATGGAACAACATAAGCTGACGGATATATTGATAGTGATATTTCAGGAAGCACGAAGGACCCTCACAAAAACAATATACAGTGCACATTCTATTCACACTTGGAGGATTCTGATGCTTAGTTTCAATCTTCATGTGACAAGAAGGCTAATGCTCGGGCTTTTTGTTAATACTTTATTCATTCCTCATATTGGATTGTAGGATAACGCTTCGCTTGGTTCTTGACCTACTGAGATGAACGAGGGAATTACATGTCACACGACAACTGCATTTCTTTTTTCACATTAGAAGACCACATTGGAATAAACCTTGCTTCTAACTTCACTCTGAACAAGATTTGAACACAGCTAAAATAGTTTATGAAGTTCCAAACTCAGTACTATCATTTTGATATTTACGAATAATAACGAAAGCGTTGGTCATTTGACGTAACCGTTAAATTGGTATAAATAACTGAACTTCAATAGTAAATTCTATCAGAGTTT

mRNA sequence

TCAAGTACATAGAGAGAGATAAAAATGTGCCGCGAGGGGTCTTTACAATTTAAATAAAACTGGGTTAGGGTTTCGTTTCTCATATCCCCGAAGATCCTCTTTACATTTTCGATAGCCATGGCGAGCACCAAAGTGCAGAGGATTATGACCCAGCCCATTAACTTGATTTTCAGGTTTCTTCAAAGTAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAGGACCTTAGGATTGAAGGCCGAATTATCGGATTTGATGAGTACATGAACTTAGTGCTTGATGATGCTGAGGAAGTTAATGTTAAGAAAAAGAGTAAAAAGGCACTTGGGAGGATTCTTCTCAAGGGAGACAATATTACATTAATGATGAACGCGGGAAAATGATGATCATCCAGCAGAACACATTATTGAGATAAAGTTTTCACTTTCATTGCAATCATGAAGTTGGAAAGGGGAAGGTGAAGCAGATAAAAGGTAGACATCCATTAGTAGACTTCTGGTGATAAAAGGCATATCTGAGCACCAGGGTGTGGGAAGAAAGATTGGACTACGAACGAAGCCAAGAGAAGGTGGTGGTGGCCGGTGGGACACACGTGGGGTCAGGGAATCACACCCTTCTAGCTCGTTTAACCATTGTCTTGATGTCTTCTGCTTGCAATTGGCAGTATGAGAAAAGGCATGTCTACCCTTGAGTTGGAAAACGAGTGCGCCATCGCATTTGTTCTTCTTTTGCATTTATTGGTTACTGACTCATCTTCCACACTTATCATTTCTCTTCCTCTCTCCTCCTTGGGTGCAAATAAGCCACTCCATTCCATTTGGTGCTTTCTTTGACACATTCCATAACCCCTGATTTCCTTCTCATGATTGGAGAAATGCATGATTGTTTCACAGTGCTTGACACAACATGAAAACATCACTATTCTTTTATTTTTACTTTCTTATCAATTGTGTTGAACTTAACCTTGGTTCTCTTCTACCTCTAGCAGGTCACTTTTCGATTAAGTTATTTGGCAATTTTGGGATAGGAATTTGTTAATCATAGGTCGTGACCTAATACGATTCTGGCACTCCCGATTCTTTGGGAAGCCTGGCTGTCAACGATGCCTTTACCCATGAAGCACGAAGGACCCTCACAAAAACAATATACAGTGCACATTCTATTCACACTTGGAGGATTCTGATGCTTAGTTTCAATCTTCATGTGACAAGAAGGCTAATGCTCGGGCTTTTTGTTAATACTTTATTCATTCCTCATATTGGATTGTAGGATAACGCTTCGCTTGGTTCTTGACCTACTGAGATGAACGAGGGAATTACATGTCACACGACAACTGCATTTCTTTTTTCACATTAGAAGACCACATTGGAATAAACCTTGCTTCTAACTTCACTCTGAACAAGATTTGAACACAGCTAAAATAGTTTATGAAGTTCCAAACTCAGTACTATCATTTTGATATTTACGAATAATAACGAAAGCGTTGGTCATTTGACGTAACCGTTAAATTGGTATAAATAACTGAACTTCAATAGTAAATTCTATCAGAGTTT

Coding sequence (CDS)

ATGGCGAGCACCAAAGTGCAGAGGATTATGACCCAGCCCATTAACTTGATTTTCAGGTTTCTTCAAAGTAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAGGACCTTAGGATTGAAGGCCGAATTATCGGATTTGATGAGTACATGAACTTAGTGCTTGATGATGCTGAGGAAGTTAATGTTAAGAAAAAGAGTAAAAAGGCACTTGGGAGGATTCTTCTCAAGGGAGACAATATTACATTAATGATGAACGCGGGAAAATGA

Protein sequence

MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNAGK
Homology
[Close]
BLAST of Cmc02g0052601 vs. NCBI nr
Match: XP_008453647.1 (PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis melo] >XP_008453648.1 PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis melo] >XP_008453649.1 PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis melo])

HSP 1 Score: 171.4 bits (433), Expect = 3.5e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNAGK 89
          NVKKKSKKALGRILLKGDNITLMMNAGK
Sbjct: 61 NVKKKSKKALGRILLKGDNITLMMNAGK 88

[Close]
BLAST of Cmc02g0052601 vs. NCBI nr
Match: XP_004146294.1 (small nuclear ribonucleoprotein E [Cucumis sativus] >XP_031736171.1 small nuclear ribonucleoprotein E [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 7.7e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNAGK 89
          NVKKKSKKALGRILLKGDNITLMMN+GK
Sbjct: 61 NVKKKSKKALGRILLKGDNITLMMNSGK 88

[Close]
BLAST of Cmc02g0052601 vs. NCBI nr
Match: XP_038880616.1 (small nuclear ribonucleoprotein E-like isoform X1 [Benincasa hispida])

HSP 1 Score: 169.9 bits (429), Expect = 1.0e-38
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0 

Query: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 40  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 99

Query: 61  NVKKKSKKALGRILLKGDNITLMMNAGK 89
           NVKKKSKKALGRILLKGDNITLMMN GK
Sbjct: 100 NVKKKSKKALGRILLKGDNITLMMNTGK 127

[Close]
BLAST of Cmc02g0052601 vs. NCBI nr
Match: XP_022921760.1 (small nuclear ribonucleoprotein E-like isoform X2 [Cucurbita moschata] >XP_022988524.1 small nuclear ribonucleoprotein E-like isoform X2 [Cucurbita maxima] >XP_023516210.1 small nuclear ribonucleoprotein E-like [Cucurbita pepo subsp. pepo] >KAG6589730.1 Small nuclear ribonucleoprotein E, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169.9 bits (429), Expect = 1.0e-38
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNAGK 89
          NVKKKSKKALGRILLKGDNITLMMN GK
Sbjct: 61 NVKKKSKKALGRILLKGDNITLMMNTGK 88

[Close]
BLAST of Cmc02g0052601 vs. NCBI nr
Match: XP_022932078.1 (small nuclear ribonucleoprotein E-like [Cucurbita moschata] >XP_022972899.1 small nuclear ribonucleoprotein E-like [Cucurbita maxima] >XP_023520877.1 small nuclear ribonucleoprotein E-like [Cucurbita pepo subsp. pepo] >XP_023520878.1 small nuclear ribonucleoprotein E-like [Cucurbita pepo subsp. pepo] >KAG6607609.1 Small nuclear ribonucleoprotein E, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168.7 bits (426), Expect = 2.2e-38
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNAGK 89
          NVKKKSKK+LGRILLKGDNITLMMN GK
Sbjct: 61 NVKKKSKKSLGRILLKGDNITLMMNTGK 88

[Close]
BLAST of Cmc02g0052601 vs. ExPASy Swiss-Prot
Match: A4FUI2 (Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.9e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKALGRILLKGDNITLMMN 86
          KS+K LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of Cmc02g0052601 vs. ExPASy Swiss-Prot
Match: P62303 (Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.9e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKALGRILLKGDNITLMMN 86
          KS+K LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of Cmc02g0052601 vs. ExPASy Swiss-Prot
Match: P62304 (Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.9e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKALGRILLKGDNITLMMN 86
          KS+K LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of Cmc02g0052601 vs. ExPASy Swiss-Prot
Match: P62305 (Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.9e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKALGRILLKGDNITLMMN 86
          KS+K LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of Cmc02g0052601 vs. ExPASy Swiss-Prot
Match: A1XQR9 (Small nuclear ribonucleoprotein E OS=Sus scrofa OX=9823 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.9e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKALGRILLKGDNITLMMN 86
          KS+K LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of Cmc02g0052601 vs. ExPASy TrEMBL
Match: A0A1S3BXJ8 (Small nuclear ribonucleoprotein E OS=Cucumis melo OX=3656 GN=LOC103494302 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.7e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNAGK 89
          NVKKKSKKALGRILLKGDNITLMMNAGK
Sbjct: 61 NVKKKSKKALGRILLKGDNITLMMNAGK 88

[Close]
BLAST of Cmc02g0052601 vs. ExPASy TrEMBL
Match: A0A0A0LUF2 (Small nuclear ribonucleoprotein E OS=Cucumis sativus OX=3659 GN=Csa_1G418790 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.7e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNAGK 89
          NVKKKSKKALGRILLKGDNITLMMN+GK
Sbjct: 61 NVKKKSKKALGRILLKGDNITLMMNSGK 88

[Close]
BLAST of Cmc02g0052601 vs. ExPASy TrEMBL
Match: A0A6J1JLU4 (Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111485738 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.9e-39
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNAGK 89
          NVKKKSKKALGRILLKGDNITLMMN GK
Sbjct: 61 NVKKKSKKALGRILLKGDNITLMMNTGK 88

[Close]
BLAST of Cmc02g0052601 vs. ExPASy TrEMBL
Match: A0A6J1E6Q3 (Small nuclear ribonucleoprotein E OS=Cucurbita moschata OX=3662 GN=LOC111429915 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.9e-39
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNAGK 89
          NVKKKSKKALGRILLKGDNITLMMN GK
Sbjct: 61 NVKKKSKKALGRILLKGDNITLMMNTGK 88

[Close]
BLAST of Cmc02g0052601 vs. ExPASy TrEMBL
Match: A0A6J1ICX7 (Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111471407 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.1e-38
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNAGK 89
          NVKKKSKK+LGRILLKGDNITLMMN GK
Sbjct: 61 NVKKKSKKSLGRILLKGDNITLMMNTGK 88

[Close]
BLAST of Cmc02g0052601 vs. TAIR 10
Match: AT4G30330.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 161.4 bits (407), Expect = 3.3e-40
Identity = 81/88 (92.05%), Postives = 86/88 (97.73%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNAGK 89
          ++KKK++K LGRILLKGDNITLMMNAGK
Sbjct: 61 SIKKKTRKPLGRILLKGDNITLMMNAGK 88

[Close]
BLAST of Cmc02g0052601 vs. TAIR 10
Match: AT2G18740.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 157.9 bits (398), Expect = 3.7e-39
Identity = 79/88 (89.77%), Postives = 84/88 (95.45%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNAGK 89
          ++KK ++K LGRILLKGDNITLMMN GK
Sbjct: 61 SIKKNTRKPLGRILLKGDNITLMMNTGK 88

[Close]
BLAST of Cmc02g0052601 vs. TAIR 10
Match: AT2G18740.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 127.5 bits (319), Expect = 5.3e-30
Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSKKALG 72
          ++KK ++K LG
Sbjct: 61 SIKKNTRKPLG 71

[Close]
BLAST of Cmc02g0052601 vs. TAIR 10
Match: AT5G48870.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 47.0 bits (110), Expect = 9.2e-06
Identity = 27/77 (35.06%), Postives = 44/77 (57.14%), Query Frame = 0 

Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKA--L 72
          P  LI R + SK    IW+  + D  + G + GFD Y+N+VL+D  E  +  + ++   L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKL 69

Query: 73 GRILLKGDNITLMMNAG 88
           +ILL G+NI +++  G
Sbjct: 70 DQILLNGNNIAILVPGG 82

The following BLAST results are available for this feature:
BLAST of Cmc02g0052601 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008453647.13.5e-39100.00PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis melo] >XP_008453648.1... [more]
XP_004146294.17.7e-3998.86small nuclear ribonucleoprotein E [Cucumis sativus] >XP_031736171.1 small nuclea... [more]
XP_038880616.11.0e-3898.86small nuclear ribonucleoprotein E-like isoform X1 [Benincasa hispida][more]
XP_022921760.11.0e-3898.86small nuclear ribonucleoprotein E-like isoform X2 [Cucurbita moschata] >XP_02298... [more]
XP_022932078.12.2e-3897.73small nuclear ribonucleoprotein E-like [Cucurbita moschata] >XP_022972899.1 smal... [more]
BLAST of Cmc02g0052601 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A4FUI24.9e-2871.60Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1[more]
P623034.9e-2871.60Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1[more]
P623044.9e-2871.60Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1[more]
P623054.9e-2871.60Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1[more]
A1XQR94.9e-2871.60Small nuclear ribonucleoprotein E OS=Sus scrofa OX=9823 GN=SNRPE PE=3 SV=1[more]
BLAST of Cmc02g0052601 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BXJ81.7e-39100.00Small nuclear ribonucleoprotein E OS=Cucumis melo OX=3656 GN=LOC103494302 PE=3 S... [more]
A0A0A0LUF23.7e-3998.86Small nuclear ribonucleoprotein E OS=Cucumis sativus OX=3659 GN=Csa_1G418790 PE=... [more]
A0A6J1JLU44.9e-3998.86Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111485738 PE... [more]
A0A6J1E6Q34.9e-3998.86Small nuclear ribonucleoprotein E OS=Cucurbita moschata OX=3662 GN=LOC111429915 ... [more]
A0A6J1ICX71.1e-3897.73Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111471407 PE... [more]
BLAST of Cmc02g0052601 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G30330.13.3e-4092.05Small nuclear ribonucleoprotein family protein [more]
AT2G18740.13.7e-3989.77Small nuclear ribonucleoprotein family protein [more]
AT2G18740.25.3e-3088.73Small nuclear ribonucleoprotein family protein [more]
AT5G48870.19.2e-0635.06Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 19..85
e-value: 1.5E-17
score: 74.3
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 20..83
e-value: 3.8E-18
score: 65.0
NoneNo IPR availableGENE3D2.30.30.100coord: 1..86
e-value: 7.3E-42
score: 143.1
NoneNo IPR availablePANTHERPTHR11193:SF10SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 1..87
IPR027078Small nuclear ribonucleoprotein EPANTHERPTHR11193SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 1..87
IPR027078Small nuclear ribonucleoprotein ECDDcd01718Sm_Ecoord: 7..85
e-value: 1.01611E-51
score: 154.634
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 12..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc02g0052601.1Cmc02g0052601.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000387 spliceosomal snRNP assembly
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005737 cytoplasm
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0005687 U4 snRNP
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005682 U5 snRNP
cellular_component GO:0005681 spliceosomal complex
molecular_function GO:0003723 RNA binding