Cmc02g0052491 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0052491
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol
Location	CMiso1.1chr02: 19943522 .. 19945231 (+)
RNA-Seq Expression	Cmc02g0052491
Synteny	Cmc02g0052491

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGGAAAAAGGTGGAATAGAATTAATGTAGTTGTGGACAACATTTTTGCGTATAATGTTGCACATAATATCATTCATGAAAATGAGGATTATGAACCTAAATCTGTTGACGAATGTCGTAATAGAAAGGATTGGTCCAAGTGGAAAGAAGCCATCCAAGCAGAACTAAACTCACTCACGAAATGTGAAGTTTTTGGACCTGTAGTTTATACACCTAAAGGTGTAAAACCTGTGGGATTTAAATGGGTATTTGTGCGTAAACGAAATGAAAATAATGAGGTCACTAGATATAAAGCACGACTTGTTGCACAAGGATTGTCTCAAAGATCAGGCATTGATTATGAGGAAACATATTCTCCTGTGGTGGATGCTATTACATTAAGATATTTAATTAGTCTGGCTGTATGTGAAAATCTTGATATGCATCTTATGGATGTAGTTACAGCATACTTATATGGATCTTTGAAAAATGAAATCTATATGAAAATCCCTGAAGGATTTAAGATACCTGAATCATATAATTCAAACTCTAGAGAATTATGTTCAATCAAATTACAAAGATCATTATATGGATTGAAACAATCAAGACGAATGTGGTACAATCGCTTAAGTGAATATTTATTGAAAGAAGGTTATCAAAATAATCCAATTTATCCATGTGTTTTTATTAAGAAATCACAGTCAGGATTTGCGATTATAGCTGTATATGTTGATGATTTAAATATAATTGGAACTCCTGAAGAGCTTTCAAAGGCAATAGAATATCTCAAAAAGGAATTTGAAATGAAAGATCTTGGTAAGACAAAATTTTGCCTTGGCTTACAAGTCGAGCATTTAGCCGATGGAATTTTTATTCATCAATCAACATATACAAAAAAGATTTTAAAAAGATTCTACATGGACAAAGCACACCCATTAAACATTCCAATGGTGGTTCGATCACTAGATGTAAAAAAGGATATCTTTCGACTTCGAGAAGATAATGAAGAATTACTTGGTCCTGAAGTATCGTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCATTTTCAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAACAAAAAGACACTGGAATGGAGTTAAGCATGTACTTCGTCATCTGCGAGGGACAATTGATATGGGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGGTTATGCGGATGCTGGATATTTATCTGATCCACACAAAGCAATATCTCAAACAGGTTATATGTTTACATGTGGAGGAACTGCTATATCTTGGCGATCTGTAAAGCAAACCATGACGGCCACTTCATCGAATCATGCAGAAATTCTTGCAATTCATGAAACTAGTAAAGAATATGTATGGTTGAGGTCAATGACTCATCATATTCGAGAAACATGTGGTTTGTCTTTCAGTAAAAATTTACCAACAATATTATTTGAACATAATACCGCATGTATAGTACAAATCAAAGGAGGGTATATAAAAGGAGGTAGAACAAAGCATATCTCACCAAAACTCTTCTATACGCATGACCTTGAAGAAAATGGTGACATCAGTATTCAACAAATTTCTTCAAAAGACAACTTGGTGGACTTATTCACAAAAGCATTACCCACATCAACATTTGAAAAGCTAGTGCACAACATTGGAATGCGACGACTCAGAGAACTTAAGTGA

mRNA sequence

ATGACAGGAAAAAGGTGGAATAGAATTAATGTAGTTGTGGACAACATTTTTGCGTATAATGTTGCACATAATATCATTCATGAAAATGAGGATTATGAACCTAAATCTGTTGACGAATGTCGTAATAGAAAGGATTGGTCCAAGTGGAAAGAAGCCATCCAAGCAGAACTAAACTCACTCACGAAATGTGAAGTTTTTGGACCTGTAGTTTATACACCTAAAGGTGTAAAACCTGTGGGATTTAAATGGGTATTTGTGCGTAAACGAAATGAAAATAATGAGGTCACTAGATATAAAGCACGACTTGTTGCACAAGGATTGTCTCAAAGATCAGGCATTGATTATGAGGAAACATATTCTCCTGTGGTGGATGCTATTACATTAAGATATTTAATTAGTCTGGCTGTATGTGAAAATCTTGATATGCATCTTATGGATGTAGTTACAGCATACTTATATGGATCTTTGAAAAATGAAATCTATATGAAAATCCCTGAAGGATTTAAGATACCTGAATCATATAATTCAAACTCTAGAGAATTATGTTCAATCAAATTACAAAGATCATTATATGGATTGAAACAATCAAGACGAATGTGGTACAATCGCTTAAGTGAATATTTATTGAAAGAAGGTTATCAAAATAATCCAATTTATCCATGTGTTTTTATTAAGAAATCACAGTCAGGATTTGCGATTATAGCTGTATATGTTGATGATTTAAATATAATTGGAACTCCTGAAGAGCTTTCAAAGGCAATAGAATATCTCAAAAAGGAATTTGAAATGAAAGATCTTGGTAAGACAAAATTTTGCCTTGGCTTACAAGTCGAGCATTTAGCCGATGGAATTTTTATTCATCAATCAACATATACAAAAAAGATTTTAAAAAGATTCTACATGGACAAAGCACACCCATTAAACATTCCAATGGTGGTTCGATCACTAGATGTAAAAAAGGATATCTTTCGACTTCGAGAAGATAATGAAGAATTACTTGGTCCTGAAGTATCGTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCATTTTCAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAACAAAAAGACACTGGAATGGAGTTAAGCATGTACTTCGTCATCTGCGAGGGACAATTGATATGGGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGGTTATGCGGATGCTGGATATTTATCTGATCCACACAAAGCAATATCTCAAACAGGTTATATGTTTACATGTGGAGGAACTGCTATATCTTGGCGATCTGTAAAGCAAACCATGACGGCCACTTCATCGAATCATGCAGAAATTCTTGCAATTCATGAAACTAGTAAAGAATATGTATGGTTGAGGTCAATGACTCATCATATTCGAGAAACATGTGGTTTGTCTTTCAGTAAAAATTTACCAACAATATTATTTGAACATAATACCGCATGTATAGTACAAATCAAAGGAGGGTATATAAAAGGAGGTAGAACAAAGCATATCTCACCAAAACTCTTCTATACGCATGACCTTGAAGAAAATGGTGACATCAGTATTCAACAAATTTCTTCAAAAGACAACTTGGTGGACTTATTCACAAAAGCATTACCCACATCAACATTTGAAAAGCTAGTGCACAACATTGGAATGCGACGACTCAGAGAACTTAAGTGA

Coding sequence (CDS)

ATGACAGGAAAAAGGTGGAATAGAATTAATGTAGTTGTGGACAACATTTTTGCGTATAATGTTGCACATAATATCATTCATGAAAATGAGGATTATGAACCTAAATCTGTTGACGAATGTCGTAATAGAAAGGATTGGTCCAAGTGGAAAGAAGCCATCCAAGCAGAACTAAACTCACTCACGAAATGTGAAGTTTTTGGACCTGTAGTTTATACACCTAAAGGTGTAAAACCTGTGGGATTTAAATGGGTATTTGTGCGTAAACGAAATGAAAATAATGAGGTCACTAGATATAAAGCACGACTTGTTGCACAAGGATTGTCTCAAAGATCAGGCATTGATTATGAGGAAACATATTCTCCTGTGGTGGATGCTATTACATTAAGATATTTAATTAGTCTGGCTGTATGTGAAAATCTTGATATGCATCTTATGGATGTAGTTACAGCATACTTATATGGATCTTTGAAAAATGAAATCTATATGAAAATCCCTGAAGGATTTAAGATACCTGAATCATATAATTCAAACTCTAGAGAATTATGTTCAATCAAATTACAAAGATCATTATATGGATTGAAACAATCAAGACGAATGTGGTACAATCGCTTAAGTGAATATTTATTGAAAGAAGGTTATCAAAATAATCCAATTTATCCATGTGTTTTTATTAAGAAATCACAGTCAGGATTTGCGATTATAGCTGTATATGTTGATGATTTAAATATAATTGGAACTCCTGAAGAGCTTTCAAAGGCAATAGAATATCTCAAAAAGGAATTTGAAATGAAAGATCTTGGTAAGACAAAATTTTGCCTTGGCTTACAAGTCGAGCATTTAGCCGATGGAATTTTTATTCATCAATCAACATATACAAAAAAGATTTTAAAAAGATTCTACATGGACAAAGCACACCCATTAAACATTCCAATGGTGGTTCGATCACTAGATGTAAAAAAGGATATCTTTCGACTTCGAGAAGATAATGAAGAATTACTTGGTCCTGAAGTATCGTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCATTTTCAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAACAAAAAGACACTGGAATGGAGTTAAGCATGTACTTCGTCATCTGCGAGGGACAATTGATATGGGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGGTTATGCGGATGCTGGATATTTATCTGATCCACACAAAGCAATATCTCAAACAGGTTATATGTTTACATGTGGAGGAACTGCTATATCTTGGCGATCTGTAAAGCAAACCATGACGGCCACTTCATCGAATCATGCAGAAATTCTTGCAATTCATGAAACTAGTAAAGAATATGTATGGTTGAGGTCAATGACTCATCATATTCGAGAAACATGTGGTTTGTCTTTCAGTAAAAATTTACCAACAATATTATTTGAACATAATACCGCATGTATAGTACAAATCAAAGGAGGGTATATAAAAGGAGGTAGAACAAAGCATATCTCACCAAAACTCTTCTATACGCATGACCTTGAAGAAAATGGTGACATCAGTATTCAACAAATTTCTTCAAAAGACAACTTGGTGGACTTATTCACAAAAGCATTACCCACATCAACATTTGAAAAGCTAGTGCACAACATTGGAATGCGACGACTCAGAGAACTTAAGTGA

Protein sequence

MTGKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNRKDWSKWKEAIQAELNSLTKCEVFGPVVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGLSQRSGIDYEETYSPVVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLKNEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSRRMWYNRLSEYLLKEGYQNNPIYPCVFIKKSQSGFAIIAVYVDDLNIIGTPEELSKAIEYLKKEFEMKDLGKTKFCLGLQVEHLADGIFIHQSTYTKKILKRFYMDKAHPLNIPMVVRSLDVKKDIFRLREDNEELLGPEVSYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNGVKHVLRHLRGTIDMGLFYSNKSNFDLVGYADAGYLSDPHKAISQTGYMFTCGGTAISWRSVKQTMTATSSNHAEILAIHETSKEYVWLRSMTHHIRETCGLSFSKNLPTILFEHNTACIVQIKGGYIKGGRTKHISPKLFYTHDLEENGDISIQQISSKDNLVDLFTKALPTSTFEKLVHNIGMRRLRELK

Homology

[Close]

BLAST of Cmc02g0052491 vs. NCBI nr
Match: RVW59049.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 906.0 bits (2340), Expect = 1.7e-259
Identity = 431/567 (76.01%), Postives = 496/567 (87.48%), Query Frame = 0


Query: 2    TGKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNRKDWSKWKEAIQAELNSLT 61
            TG++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R DW KWKEAIQAELNSLT
Sbjct: 505  TGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 564

Query: 62   KCEVFGPVVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGLSQRSGIDYEETYSP 121
            K EVFGPVV TP+ VKPVG+KWVFVRKRNENNE+ RYKARLVAQG SQR GIDYEETYSP
Sbjct: 565  KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSP 624

Query: 122  VVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLKNEIYMKIPEGFKIPESYNSNSREL 181
            V+DAIT R+LISLAV E LDM LMDV+TAYLYGS+ N+IYMKIPEGFK+P++ N+  R +
Sbjct: 625  VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 684

Query: 182  CSIKLQRSLYGLKQSRRMWYNRLSEYLLKEGYQNNPIYPCVFIKKSQSGFAIIAVYVDDL 241
             SIKLQRSLYGLKQS RMWYNRLSEYLLKEGY NNPI PC+FIKKS++GFAIIAVYVDDL
Sbjct: 685  YSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDL 744

Query: 242  NIIGTPEELSKAIEYLKKEFEMKDLGKTKFCLGLQVEHLADGIFIHQSTYTKKILKRFYM 301
            N++GTPEEL++   YLKKEFEMKDLGKTKFCLGLQ+EH  +G+ +HQSTY KK+LKRFYM
Sbjct: 745  NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYM 804

Query: 302  DKAHPLNIPMVVRSLDVKKDIFRLREDNEELLGPEVSYLSAIGALMYLANNTRPDIAFSV 361
            DKAHPL+ PMVVRSLDVKKD FR  E +EELLGPEV YLSAIGALMYLAN TRPDIAFSV
Sbjct: 805  DKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSV 864

Query: 362  NLLARYSSSPTKRHWNGVKHVLRHLRGTIDMGLFYSNKSNFDLVGYADAGYLSDPHKAIS 421
            NLLARYSS+PT+RHWNG+KH+LR+LRGT DMGLFYS +S   L+GYADAGYLSDPHK  S
Sbjct: 865  NLLARYSSAPTRRHWNGIKHILRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRS 924

Query: 422  QTGYMFTCGGTAISWRSVKQTMTATSSNHAEILAIHETSKEYVWLRSMTHHIRETCGLSF 481
            QTGY+F C GTAISWRSVKQTM ATSSNH+EILAIHE S+E +WLRSM  HIRE+CGLS 
Sbjct: 925  QTGYVFNCNGTAISWRSVKQTMVATSSNHSEILAIHEASRECIWLRSMIQHIRESCGLSS 984

Query: 482  SKNLPTILFEHNTACIVQIKGGYIKGGRTKHISPKLFYTHDLEENGDISIQQISSKDNLV 541
             K  PT LFE N ACI QI GGYIKG RTKHISPK FYTH+L+++G+I +QQI S DNL 
Sbjct: 985  IKGGPTTLFEDNAACIAQITGGYIKGDRTKHISPKFFYTHELQKSGEIDVQQIRSSDNLA 1044

Query: 542  DLFTKALPTSTFEKLVHNIGMRRLREL 569
            DLFTK+LPTSTF+KL+H IGMR+L+++
Sbjct: 1045 DLFTKSLPTSTFKKLIHRIGMRQLKDI 1071

[Close]

BLAST of Cmc02g0052491 vs. NCBI nr
Match: RVW51062.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 904.8 bits (2337), Expect = 3.7e-259
Identity = 430/567 (75.84%), Postives = 496/567 (87.48%), Query Frame = 0


Query: 2    TGKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNRKDWSKWKEAIQAELNSLT 61
            TG++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R DW KWKEAIQAELNSLT
Sbjct: 508  TGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 567

Query: 62   KCEVFGPVVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGLSQRSGIDYEETYSP 121
            K EVFGPVV TP+ VKPVG+KWVFVRKRNENNE+ RYKARLVAQG SQR GIDYEETYSP
Sbjct: 568  KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSP 627

Query: 122  VVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLKNEIYMKIPEGFKIPESYNSNSREL 181
            V+DAIT R+LISLAV E LDM LMDV+TAYLYGS+ N+IYMKIPEGFK+P++ N+  R +
Sbjct: 628  VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 687

Query: 182  CSIKLQRSLYGLKQSRRMWYNRLSEYLLKEGYQNNPIYPCVFIKKSQSGFAIIAVYVDDL 241
             SIKLQRSLYGLKQS RMWYNRLSEYLLKEGY NNPI PC+FIKKS++GFAIIAVYVDDL
Sbjct: 688  YSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDL 747

Query: 242  NIIGTPEELSKAIEYLKKEFEMKDLGKTKFCLGLQVEHLADGIFIHQSTYTKKILKRFYM 301
            N++GTPEEL++   YLKKEFEMKDLGKTKFCLGLQ+EH  +G+ +HQSTY KK+LKRFYM
Sbjct: 748  NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYM 807

Query: 302  DKAHPLNIPMVVRSLDVKKDIFRLREDNEELLGPEVSYLSAIGALMYLANNTRPDIAFSV 361
            DKAHPL+ PMVVRSLDVKKD FR  E +EELLGPEV YL+AIGALMYLAN TRPDIAFSV
Sbjct: 808  DKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLNAIGALMYLANCTRPDIAFSV 867

Query: 362  NLLARYSSSPTKRHWNGVKHVLRHLRGTIDMGLFYSNKSNFDLVGYADAGYLSDPHKAIS 421
            NLLARYSS+PT+RHWNG+KH+LR+LRGT DMGLFYS +S   L+GYADAGYLSDPHK  S
Sbjct: 868  NLLARYSSAPTRRHWNGIKHILRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRS 927

Query: 422  QTGYMFTCGGTAISWRSVKQTMTATSSNHAEILAIHETSKEYVWLRSMTHHIRETCGLSF 481
            QTGY+F C GTAISWRSVKQTM ATSSNH+EILAIHE S+E +WLRSM  HIRE+CGLS 
Sbjct: 928  QTGYVFNCNGTAISWRSVKQTMVATSSNHSEILAIHEASRECIWLRSMIQHIRESCGLSS 987

Query: 482  SKNLPTILFEHNTACIVQIKGGYIKGGRTKHISPKLFYTHDLEENGDISIQQISSKDNLV 541
             K  PT LFE N ACI QI GGYIKG RTKHISPK FYTH+L+++G+I +QQI S DNL 
Sbjct: 988  IKGGPTTLFEDNAACIAQITGGYIKGDRTKHISPKFFYTHELQKSGEIDVQQIRSSDNLA 1047

Query: 542  DLFTKALPTSTFEKLVHNIGMRRLREL 569
            DLFTK+LPTSTF+KL+H IGMR+L+++
Sbjct: 1048 DLFTKSLPTSTFKKLIHRIGMRQLKDI 1074

[Close]

BLAST of Cmc02g0052491 vs. NCBI nr
Match: RVW50867.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 902.9 bits (2332), Expect = 1.4e-258
Identity = 429/567 (75.66%), Postives = 495/567 (87.30%), Query Frame = 0


Query: 2    TGKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNRKDWSKWKEAIQAELNSLT 61
            TG++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R DW KWKEAIQAELNSLT
Sbjct: 518  TGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 577

Query: 62   KCEVFGPVVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGLSQRSGIDYEETYSP 121
            K EVFGPVV TP+ VKPVG+KWVFVRKRNENNE+ RYKARLVAQG SQR GIDYEETYSP
Sbjct: 578  KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSP 637

Query: 122  VVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLKNEIYMKIPEGFKIPESYNSNSREL 181
            V+DAIT R+LISLAV E LDM LMDV+TAYLYGS+ N+IYMKIPEGFK+P++ N+  R +
Sbjct: 638  VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 697

Query: 182  CSIKLQRSLYGLKQSRRMWYNRLSEYLLKEGYQNNPIYPCVFIKKSQSGFAIIAVYVDDL 241
             SIKLQRSLYGLKQS RMWYNRLSEYLLKEGY NNPI PC+FIKKS++GFAIIAVYVDDL
Sbjct: 698  YSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDL 757

Query: 242  NIIGTPEELSKAIEYLKKEFEMKDLGKTKFCLGLQVEHLADGIFIHQSTYTKKILKRFYM 301
            N++GTPEEL++   YLKKEFEMKDLGKTKFCLGLQ+EH  +G+ +HQSTY KK+LKRFYM
Sbjct: 758  NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYM 817

Query: 302  DKAHPLNIPMVVRSLDVKKDIFRLREDNEELLGPEVSYLSAIGALMYLANNTRPDIAFSV 361
            DKAHPL+ PMVVRSLDVKKD FR  E +EELLGPEV YLSAIGALMYLAN TRPDIAFSV
Sbjct: 818  DKAHPLSSPMVVRSLDVKKDSFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSV 877

Query: 362  NLLARYSSSPTKRHWNGVKHVLRHLRGTIDMGLFYSNKSNFDLVGYADAGYLSDPHKAIS 421
            NLLA+YSS+PT+RHWNG+KH+LR+LRGT DMGLFYS +S   L+GYADAGYLSDPHK  S
Sbjct: 878  NLLAKYSSAPTRRHWNGIKHILRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRS 937

Query: 422  QTGYMFTCGGTAISWRSVKQTMTATSSNHAEILAIHETSKEYVWLRSMTHHIRETCGLSF 481
            QTGY+F C GTAISWRSVKQTM ATSSNH+EILAIHE S+E +WLRSM  HIRE+CGLS 
Sbjct: 938  QTGYVFNCNGTAISWRSVKQTMVATSSNHSEILAIHEASRECIWLRSMIQHIRESCGLSS 997

Query: 482  SKNLPTILFEHNTACIVQIKGGYIKGGRTKHISPKLFYTHDLEENGDISIQQISSKDNLV 541
             K  PT LFE N ACI QI GGYIKG RTKHISPK FY H+L+++G+I +QQI S DNL 
Sbjct: 998  IKGGPTTLFEDNAACIAQITGGYIKGDRTKHISPKFFYIHELQKSGEIDVQQIRSSDNLA 1057

Query: 542  DLFTKALPTSTFEKLVHNIGMRRLREL 569
            DLFTK+LPTSTF+KL+H IGMR+L+++
Sbjct: 1058 DLFTKSLPTSTFKKLIHRIGMRQLKDI 1084

[Close]

BLAST of Cmc02g0052491 vs. NCBI nr
Match: RVX16158.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 901.4 bits (2328), Expect = 4.1e-258
Identity = 429/567 (75.66%), Postives = 495/567 (87.30%), Query Frame = 0


Query: 2    TGKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNRKDWSKWKEAIQAELNSLT 61
            TG++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R DW KWKEAIQAELNSLT
Sbjct: 518  TGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 577

Query: 62   KCEVFGPVVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGLSQRSGIDYEETYSP 121
            K EVFGPVV TP+ VKPVG+KWVFVRKRNENNE+ RYKARLVAQG SQR GIDYEETYSP
Sbjct: 578  KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSP 637

Query: 122  VVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLKNEIYMKIPEGFKIPESYNSNSREL 181
            V+DAIT R+LISLAV E LDM LMDV+TAYLYGS+ N+IYMKIPEGFK+P++ N+  R +
Sbjct: 638  VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 697

Query: 182  CSIKLQRSLYGLKQSRRMWYNRLSEYLLKEGYQNNPIYPCVFIKKSQSGFAIIAVYVDDL 241
             SIKLQRSLYGLKQS RMWYNRLSEYLLK+GY NNPI PC+FIKKS++GFAIIAVYVDDL
Sbjct: 698  YSIKLQRSLYGLKQSGRMWYNRLSEYLLKKGYVNNPICPCIFIKKSETGFAIIAVYVDDL 757

Query: 242  NIIGTPEELSKAIEYLKKEFEMKDLGKTKFCLGLQVEHLADGIFIHQSTYTKKILKRFYM 301
            N++GTPEEL++   YLKKEFEMKDLGKTKFCLGLQ+EH  +G+ +HQSTY KK+LK FYM
Sbjct: 758  NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKCFYM 817

Query: 302  DKAHPLNIPMVVRSLDVKKDIFRLREDNEELLGPEVSYLSAIGALMYLANNTRPDIAFSV 361
            DKAHPL+ PMVVRSLDVKKD FR  E +EELLGPEV YLSAIGALMYLAN TRPDIAFSV
Sbjct: 818  DKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSV 877

Query: 362  NLLARYSSSPTKRHWNGVKHVLRHLRGTIDMGLFYSNKSNFDLVGYADAGYLSDPHKAIS 421
            NLLARYSS+PT+RHWNG+KH+LR+LRGT DMGLFYS +S   L+GYADAGYLSDPHK  S
Sbjct: 878  NLLARYSSTPTRRHWNGIKHILRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRS 937

Query: 422  QTGYMFTCGGTAISWRSVKQTMTATSSNHAEILAIHETSKEYVWLRSMTHHIRETCGLSF 481
            QTGY+F C GTAISWRSVKQTM ATSSNH+EILAIHE S+E +WLRSM  HIRE+CGLS 
Sbjct: 938  QTGYVFNCNGTAISWRSVKQTMVATSSNHSEILAIHEASRECIWLRSMIQHIRESCGLSS 997

Query: 482  SKNLPTILFEHNTACIVQIKGGYIKGGRTKHISPKLFYTHDLEENGDISIQQISSKDNLV 541
             K  PT LFE N ACI QI GGYIKG RTKHISPK FYTH+L+++G+I +QQI S DNL 
Sbjct: 998  IKGGPTTLFEDNAACIAQITGGYIKGDRTKHISPKFFYTHELQKSGEIDVQQIRSSDNLA 1057

Query: 542  DLFTKALPTSTFEKLVHNIGMRRLREL 569
            DLFTK+LPTSTF+KL+H IGMR+L+++
Sbjct: 1058 DLFTKSLPTSTFKKLIHRIGMRQLKDI 1084

[Close]

BLAST of Cmc02g0052491 vs. NCBI nr
Match: RVW51051.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 900.2 bits (2325), Expect = 9.1e-258
Identity = 429/567 (75.66%), Postives = 494/567 (87.13%), Query Frame = 0


Query: 2    TGKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNRKDWSKWKEAIQAELNSLT 61
            TG++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R DW KWKEAIQAELNSLT
Sbjct: 518  TGEKWDRNNIVINNIFAFQVAFDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 577

Query: 62   KCEVFGPVVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGLSQRSGIDYEETYSP 121
            K EVFGPVV TP+ VKPVG+KWVFVRKRNENNE+ RYKARLVAQG SQR G+DYEETYSP
Sbjct: 578  KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGVDYEETYSP 637

Query: 122  VVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLKNEIYMKIPEGFKIPESYNSNSREL 181
            V+DAIT R+LISLAV E LDM LMDV+TAYLYGS+ N+IYMKIPEGFK+P++ N+  R +
Sbjct: 638  VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 697

Query: 182  CSIKLQRSLYGLKQSRRMWYNRLSEYLLKEGYQNNPIYPCVFIKKSQSGFAIIAVYVDDL 241
             SIKLQRSLYGLKQS RMWYNRLSEYLLKEGY NNPI PC+FIKK ++GFAIIAVYVDDL
Sbjct: 698  YSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKKLETGFAIIAVYVDDL 757

Query: 242  NIIGTPEELSKAIEYLKKEFEMKDLGKTKFCLGLQVEHLADGIFIHQSTYTKKILKRFYM 301
            N++GTPEEL++   YLKKEFEMKDLGKTKFCLGLQ+EH  +G+ +HQSTY KK+LKRFYM
Sbjct: 758  NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYM 817

Query: 302  DKAHPLNIPMVVRSLDVKKDIFRLREDNEELLGPEVSYLSAIGALMYLANNTRPDIAFSV 361
            DKAHPL+ PMVVRSLDVKKD FR  E +EELLGPEV YLSAIGALMYLAN TRPDIAFSV
Sbjct: 818  DKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSV 877

Query: 362  NLLARYSSSPTKRHWNGVKHVLRHLRGTIDMGLFYSNKSNFDLVGYADAGYLSDPHKAIS 421
            NLLARYSSSPT+RHWNG+KH+LR+LRGT DMGLFYS +S   L+GYADAGYLSDPHK  S
Sbjct: 878  NLLARYSSSPTRRHWNGIKHILRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRS 937

Query: 422  QTGYMFTCGGTAISWRSVKQTMTATSSNHAEILAIHETSKEYVWLRSMTHHIRETCGLSF 481
            QTGY+F   GTAISWRSVKQTM ATSSNH+EILAIHE S+E +WLRSM  HIRE+CGLS 
Sbjct: 938  QTGYVFNYNGTAISWRSVKQTMVATSSNHSEILAIHEASRECIWLRSMIQHIRESCGLSS 997

Query: 482  SKNLPTILFEHNTACIVQIKGGYIKGGRTKHISPKLFYTHDLEENGDISIQQISSKDNLV 541
             K  PT LFE N ACI QI GGYIKG RTKHISPK FYTH+L+++G+I +QQI S DNL 
Sbjct: 998  IKGDPTTLFEDNAACIAQITGGYIKGDRTKHISPKFFYTHELQKSGEIDVQQIRSSDNLA 1057

Query: 542  DLFTKALPTSTFEKLVHNIGMRRLREL 569
            DLFTK+LPTSTF+KL+H IGMR+L+++
Sbjct: 1058 DLFTKSLPTSTFKKLIHKIGMRQLKDI 1084

[Close]

BLAST of Cmc02g0052491 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.1e-85
Identity = 188/538 (34.94%), Postives = 303/538 (56.32%), Query Frame = 0


Query: 29   NEDYEPKSVDECRNRKDWSKWKEAIQAELNSLTKCEVFGPVVYTPKGVKPVGFKWVFVRK 88
            ++D EP+S+ E  +  + ++  +A+Q E+ SL K   +  +V  PKG +P+  KWVF  K
Sbjct: 806  SDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTY-KLVELPKGKRPLKCKWVFKLK 865

Query: 89   RNENNEVTRYKARLVAQGLSQRSGIDYEETYSPVVDAITLRYLISLAVCENLDMHLMDVV 148
            ++ + ++ RYKARLV +G  Q+ GID++E +SPVV   ++R ++SLA   +L++  +DV 
Sbjct: 866  KDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVK 925

Query: 149  TAYLYGSLKNEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSRRMWYNRLSEYL 208
            TA+L+G L+ EIYM+ PEGF++          +C  KL +SLYGLKQ+ R WY +   ++
Sbjct: 926  TAFLHGDLEEEIYMEQPEGFEVA----GKKHMVC--KLNKSLYGLKQAPRQWYMKFDSFM 985

Query: 209  LKEGYQNNPIYPCVFIKK-SQSGFAIIAVYVDDLNIIGTPEEL-SKAIEYLKKEFEMKDL 268
              + Y      PCV+ K+ S++ F I+ +YVDD+ I+G  + L +K    L K F+MKDL
Sbjct: 986  KSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDL 1045

Query: 269  GKTKFCLGLQV--EHLADGIFIHQSTYTKKILKRFYMDKAHPLNIPMVVRSLDVKKDIFR 328
            G  +  LG+++  E  +  +++ Q  Y +++L+RF M  A P++ P+       KK    
Sbjct: 1046 GPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPT 1105

Query: 329  LREDNEELLGPEVSYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNGVKHVLR 388
              E+   +   +V Y SA+G+LMY    TRPDIA +V +++R+  +P K HW  VK +LR
Sbjct: 1106 TVEEKGNM--AKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILR 1165

Query: 389  HLRGTIDMGLFYSNKSNFDLVGYADAGYLSDPHKAISQTGYMFTCGGTAISWRSVKQTMT 448
            +LRGT    L +   S+  L GY DA    D     S TGY+FT  G AISW+S  Q   
Sbjct: 1166 YLRGTTGDCLCFGG-SDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCV 1225

Query: 449  ATSSNHAEILAIHETSKEYVWLRSMTHHIRETCGLSFSKNLPTILFEHNTACIVQIKGGY 508
            A S+  AE +A  ET KE +WL+           L   +    +  +  +A  + +    
Sbjct: 1226 ALSTTEAEYIAATETGKEMIWLKRFLQE------LGLHQKEYVVYCDSQSA--IDLSKNS 1285

Query: 509  IKGGRTKHISPKLFYTHDLEENGDISIQQISSKDNLVDLFTKALPTSTFEKLVHNIGM 563
            +   RTKHI  +  +  ++ ++  + + +IS+ +N  D+ TK +P + FE     +GM
Sbjct: 1286 MYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325

[Close]

BLAST of Cmc02g0052491 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 304.3 bits (778), Expect = 2.9e-81
Identity = 193/562 (34.34%), Postives = 297/562 (52.85%), Query Frame = 0


Query: 7    NRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNRKDWSKWKEAIQAELNSLTKCEVF 66
            N +N VV N      AH I ++     P S DE + R D S W+EAI  ELN+  K    
Sbjct: 874  NSLNKVVLN------AHTIFND----VPNSFDEIQYRDDKSSWEEAINTELNA-HKINNT 933

Query: 67   GPVVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGLSQRSGIDYEETYSPVVDAI 126
              +   P+    V  +WVF  K NE     RYKARLVA+G +Q+  IDYEET++PV    
Sbjct: 934  WTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARIS 993

Query: 127  TLRYLISLAVCENLDMHLMDVVTAYLYGSLKNEIYMKIPEGFKIPESYNSNSRELCSIKL 186
            + R+++SL +  NL +H MDV TA+L G+LK EIYM++P+G       + NS  +C  KL
Sbjct: 994  SFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI------SCNSDNVC--KL 1053

Query: 187  QRSLYGLKQSRRMWYNRLSEYLLKEGYQNNPIYPCVFI--KKSQSGFAIIAVYVDDLNI- 246
             +++YGLKQ+ R W+    + L +  + N+ +  C++I  K + +    + +YVDD+ I 
Sbjct: 1054 NKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIA 1113

Query: 247  IGTPEELSKAIEYLKKEFEMKDLGKTKFCLGLQVEHLADGIFIHQSTYTKKILKRFYMDK 306
             G    ++    YL ++F M DL + K  +G+++E   D I++ QS Y KKIL +F M+ 
Sbjct: 1114 TGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMEN 1173

Query: 307  AHPLNIPMVVRSLDVKKDIFRLREDNEELLGPEVSYLSAIGALMYLANNTRPDIAFSVNL 366
             + ++ P+        K  + L   +E+   P     S IG LMY+   TRPD+  +VN+
Sbjct: 1174 CNAVSTPL------PSKINYELLNSDEDCNTP---CRSLIGCLMYIMLCTRPDLTTAVNI 1233

Query: 367  LARYSSSPTKRHWNGVKHVLRHLRGTIDMGLFYSNKSNFD--LVGYADAGYLSDPHKAIS 426
            L+RYSS      W  +K VLR+L+GTIDM L +     F+  ++GY D+ +        S
Sbjct: 1234 LSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKS 1293

Query: 427  QTGYMFTC-GGTAISWRSVKQTMTATSSNHAEILAIHETSKEYVWLRSMTHHIRETCGLS 486
             TGY+F       I W + +Q   A SS  AE +A+ E  +E +WL+ +         ++
Sbjct: 1294 TTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFL------LTSIN 1353

Query: 487  FSKNLPTILFEHNTACIVQIKGGYIKGGRTKHISPKLFYTHDLEENGDISIQQISSKDNL 546
                 P  ++E N  CI  I        R KHI  K  +  +  +N  I ++ I +++ L
Sbjct: 1354 IKLENPIKIYEDNQGCI-SIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQL 1400

Query: 547  VDLFTKALPTSTFEKLVHNIGM 563
             D+FTK LP + F +L   +G+
Sbjct: 1414 ADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Cmc02g0052491 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.5e-72
Identity = 163/516 (31.59%), Postives = 261/516 (50.58%), Query Frame = 0


Query: 48   KWKEAIQAELNSLTKCEVFGPVVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGL 107
            +W++A+ +E+N+      +  V   P  V  VG +W+F +K N +  + RYKARLVA+G 
Sbjct: 950  RWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGY 1009

Query: 108  SQRSGIDYEETYSPVVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLKNEIYMKIPEG 167
            +QR G+DY ET+SPV+ + ++R ++ +AV  +  +  +DV  A+L G+L +E+YM  P G
Sbjct: 1010 NQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPG 1069

Query: 168  FKIPESYNSNSRELCSIKLQRSLYGLKQSRRMWYNRLSEYLLKEGYQNNPIYPCVFIKKS 227
            F          R     +L++++YGLKQ+ R WY  L  YLL  G+ N+     +F+ + 
Sbjct: 1070 FV------DKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQR 1129

Query: 228  QSGFAIIAVYVDDLNIIGTPEELSK-AIEYLKKEFEMKDLGKTKFCLGLQVEHLADGIFI 287
                  + VYVDD+ I G    L K  ++ L + F +K+     + LG++ + +  G+ +
Sbjct: 1130 GRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHL 1189

Query: 288  HQSTYTKKILKRFYMDKAHPLNIPMVVRSLDVKKDIFRLREDNEELLGPEVSYLSAIGAL 347
             Q  YT  +L R  M  A P+  PM            +L   +   L     Y   +G+L
Sbjct: 1190 SQRRYTLDLLARTNMLTAKPVATPMATSP--------KLTLHSGTKLPDPTEYRGIVGSL 1249

Query: 348  MYLANNTRPDIAFSVNLLARYSSSPTKRHWNGVKHVLRHLRGTIDMGLFYSNKSNFDLVG 407
             YLA  TRPD++++VN L++Y   PT  HWN +K VLR+L GT D G+F    +   L  
Sbjct: 1250 QYLA-FTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHA 1309

Query: 408  YADAGYLSDPHKAISQTGYMFTCGGTAISWRSVKQTMTATSSNHAEILAIHETSKEYVWL 467
            Y+DA +  D    +S  GY+   G   ISW S KQ     SS  AE  ++  TS E  W+
Sbjct: 1310 YSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWI 1369

Query: 468  RSMTHHIRETCGLSFSKNLPTILFEHNTACIVQIKGGYIKGGRTKHISPKLFYTHDLEEN 527
             S+   +    G+  S   P +++  N      +    +   R KHI+    +  +  ++
Sbjct: 1370 CSLLTEL----GIQLSH--PPVIYCDNVGA-TYLCANPVFHSRMKHIALDYHFIRNQVQS 1429

Query: 528  GDISIQQISSKDNLVDLFTKALPTSTFEKLVHNIGM 563
            G + +  +S+ D L D  TK L    F+     IG+
Sbjct: 1430 GALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGV 1443

[Close]

BLAST of Cmc02g0052491 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.9e-71
Identity = 161/519 (31.02%), Postives = 266/519 (51.25%), Query Frame = 0


Query: 48   KWKEAIQAELNSLTKCEVFGPVVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGL 107
            +W+ A+ +E+N+      +  V   P  V  VG +W+F +K N +  + RYKARLVA+G 
Sbjct: 967  RWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGY 1026

Query: 108  SQRSGIDYEETYSPVVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLKNEIYMKIPEG 167
            +QR G+DY ET+SPV+ + ++R ++ +AV  +  +  +DV  A+L G+L +++YM  P G
Sbjct: 1027 NQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPG 1086

Query: 168  FKIPESYNSNSRELCSIKLQRSLYGLKQSRRMWYNRLSEYLLKEGYQNNPIYPCVFIKKS 227
            F   +  N     +C  KL+++LYGLKQ+ R WY  L  YLL  G+ N+     +F+ + 
Sbjct: 1087 FIDKDRPN----YVC--KLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQR 1146

Query: 228  QSGFAIIAVYVDDLNIIGT-PEELSKAIEYLKKEFEMKDLGKTKFCLGLQVEHLADGIFI 287
                  + VYVDD+ I G  P  L   ++ L + F +KD  +  + LG++ + +  G+ +
Sbjct: 1147 GKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHL 1206

Query: 288  HQSTYTKKILKRFYMDKAHPLNIPMVVRSLDVKKDIFRLREDNEELLGPEVSYLSAIGAL 347
             Q  Y   +L R  M  A P+  PM            +L   +   L     Y   +G+L
Sbjct: 1207 SQRRYILDLLARTNMITAKPVTTPMAPSP--------KLSLYSGTKLTDPTEYRGIVGSL 1266

Query: 348  MYLANNTRPDIAFSVNLLARYSSSPTKRHWNGVKHVLRHLRGTIDMGLFYSNKSNFDLVG 407
             YLA  TRPDI+++VN L+++   PT+ H   +K +LR+L GT + G+F    +   L  
Sbjct: 1267 QYLA-FTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHA 1326

Query: 408  YADAGYLSDPHKAISQTGYMFTCGGTAISWRSVKQTMTATSSNHAEILAIHETSKEYVWL 467
            Y+DA +  D    +S  GY+   G   ISW S KQ     SS  AE  ++  TS E  W+
Sbjct: 1327 YSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWI 1386

Query: 468  RSMTHHIRETCGLSFSKNLPTILFEHNTACIVQIKGGYIKGGRTKHISPKLFYTHDLEEN 527
             S+   +    G+  ++  P +++  N      +    +   R KHI+    +  +  ++
Sbjct: 1387 CSLLTEL----GIRLTR--PPVIYCDNVGA-TYLCANPVFHSRMKHIAIDYHFIRNQVQS 1446

Query: 528  GDISIQQISSKDNLVDLFTKALPTSTFEKLVHNIGMRRL 566
            G + +  +S+ D L D  TK L  + F+     IG+ R+
Sbjct: 1447 GALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGVTRV 1463

[Close]

BLAST of Cmc02g0052491 vs. ExPASy Swiss-Prot
Match: Q03619 (Transposon Ty1-ER2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY1B-ER2 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 4.9e-36
Identity = 142/540 (26.30%), Postives = 247/540 (45.74%), Query Frame = 0


Query: 44   KDWSKWKEAIQAELNSLTKCEVFG-PVVYTPKGVKP---VGFKWVFVRKRNENNEVTRYK 103
            K+  K+ +A   E+N L K + +     Y  K + P   +   ++F RKR+       +K
Sbjct: 1245 KEKEKYIQAYHKEVNQLLKMKTWDTDRYYDRKEIDPKRVINSMFIFNRKRDGT-----HK 1304

Query: 104  ARLVAQGLSQRSGIDYEETYSPVVDAITLRYL-----ISLAVCENLDMHLMDVVTAYLYG 163
            AR VA+G      I + +TY P + + T+ +      +SLA+  N  +  +D+ +AYLY 
Sbjct: 1305 ARFVARG-----DIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYA 1364

Query: 164  SLKNEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSRRMWYNRLSEYLLKE-GY 223
             +K E+Y++ P    + +           I+L++SLYGLKQS   WY  +  YL+K+ G 
Sbjct: 1365 DIKEELYIRPPPHLGMNDKL---------IRLKKSLYGLKQSGANWYETIKSYLIKQCGM 1424

Query: 224  QNNPIYPCVFIKKSQSGFAIIAVYVDDLNIIGTPEELS-KAIEYLKKEFEMKDLGKTKFC 283
            +    + CVF K SQ     I ++VDD+ +       + K I  LKK+++ K +   +  
Sbjct: 1425 EEVRGWSCVF-KNSQ---VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESD 1484

Query: 284  LGLQVEHLADGIFIHQSTYTKKILKRFYMDKAHPLNIPMVVR----------SLDVKKDI 343
              +Q + L   I   +  Y K  ++    +K   LN+P+  +           L + +  
Sbjct: 1485 NEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQE 1544

Query: 344  FRLREDNEELLGPEVSYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNGVKHV 403
              L ED+ ++   E+  L  IG   Y+    R D+ + +N LA++   P+K+  +    +
Sbjct: 1545 LELEEDDYKMKVHEMQKL--IGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYEL 1604

Query: 404  LRHLRGTIDMGLFYSN----KSNFDLVGYADAGYLSDPHKAISQTGYMFTCGGTAISWRS 463
            ++ +  T D  L +      K    LV  +DA Y + P+   SQ G ++   G  I  +S
Sbjct: 1605 IQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASYGNQPYYK-SQIGNIYLLNGKVIGGKS 1664

Query: 464  VKQTMTATSSNHAEILAIHETSKEYVWLRSMTHHIRETCGLSFSKNLPTILFEHNTACIV 523
             K ++T TS+  AE   IH  S+    L +++H ++E      +K L T     + + I 
Sbjct: 1665 TKASLTCTSTTEAE---IHAISESVPLLNNLSHLVQELNKKPITKGLLT----DSKSTIS 1724

Query: 524  QIKGGYIKGGRTKHISPKLFYTHDLEENGDISIQQISSKDNLVDLFTKALPTSTFEKLVH 559
             I     +  R +    K     D      + +  I +K N+ D+ TK LP  TF+ L +
Sbjct: 1725 IIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTN 1751

[Close]

BLAST of Cmc02g0052491 vs. ExPASy TrEMBL
Match: A0A438FGC5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2905 PE=4 SV=1)

HSP 1 Score: 906.0 bits (2340), Expect = 8.1e-260
Identity = 431/567 (76.01%), Postives = 496/567 (87.48%), Query Frame = 0


Query: 2    TGKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNRKDWSKWKEAIQAELNSLT 61
            TG++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R DW KWKEAIQAELNSLT
Sbjct: 505  TGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 564

Query: 62   KCEVFGPVVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGLSQRSGIDYEETYSP 121
            K EVFGPVV TP+ VKPVG+KWVFVRKRNENNE+ RYKARLVAQG SQR GIDYEETYSP
Sbjct: 565  KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSP 624

Query: 122  VVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLKNEIYMKIPEGFKIPESYNSNSREL 181
            V+DAIT R+LISLAV E LDM LMDV+TAYLYGS+ N+IYMKIPEGFK+P++ N+  R +
Sbjct: 625  VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 684

Query: 182  CSIKLQRSLYGLKQSRRMWYNRLSEYLLKEGYQNNPIYPCVFIKKSQSGFAIIAVYVDDL 241
             SIKLQRSLYGLKQS RMWYNRLSEYLLKEGY NNPI PC+FIKKS++GFAIIAVYVDDL
Sbjct: 685  YSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDL 744

Query: 242  NIIGTPEELSKAIEYLKKEFEMKDLGKTKFCLGLQVEHLADGIFIHQSTYTKKILKRFYM 301
            N++GTPEEL++   YLKKEFEMKDLGKTKFCLGLQ+EH  +G+ +HQSTY KK+LKRFYM
Sbjct: 745  NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYM 804

Query: 302  DKAHPLNIPMVVRSLDVKKDIFRLREDNEELLGPEVSYLSAIGALMYLANNTRPDIAFSV 361
            DKAHPL+ PMVVRSLDVKKD FR  E +EELLGPEV YLSAIGALMYLAN TRPDIAFSV
Sbjct: 805  DKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSV 864

Query: 362  NLLARYSSSPTKRHWNGVKHVLRHLRGTIDMGLFYSNKSNFDLVGYADAGYLSDPHKAIS 421
            NLLARYSS+PT+RHWNG+KH+LR+LRGT DMGLFYS +S   L+GYADAGYLSDPHK  S
Sbjct: 865  NLLARYSSAPTRRHWNGIKHILRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRS 924

Query: 422  QTGYMFTCGGTAISWRSVKQTMTATSSNHAEILAIHETSKEYVWLRSMTHHIRETCGLSF 481
            QTGY+F C GTAISWRSVKQTM ATSSNH+EILAIHE S+E +WLRSM  HIRE+CGLS 
Sbjct: 925  QTGYVFNCNGTAISWRSVKQTMVATSSNHSEILAIHEASRECIWLRSMIQHIRESCGLSS 984

Query: 482  SKNLPTILFEHNTACIVQIKGGYIKGGRTKHISPKLFYTHDLEENGDISIQQISSKDNLV 541
             K  PT LFE N ACI QI GGYIKG RTKHISPK FYTH+L+++G+I +QQI S DNL 
Sbjct: 985  IKGGPTTLFEDNAACIAQITGGYIKGDRTKHISPKFFYTHELQKSGEIDVQQIRSSDNLA 1044

Query: 542  DLFTKALPTSTFEKLVHNIGMRRLREL 569
            DLFTK+LPTSTF+KL+H IGMR+L+++
Sbjct: 1045 DLFTKSLPTSTFKKLIHRIGMRQLKDI 1071

[Close]

BLAST of Cmc02g0052491 vs. ExPASy TrEMBL
Match: A0A438ETU3 (Copia protein OS=Vitis vinifera OX=29760 GN=GIP_69 PE=4 SV=1)

HSP 1 Score: 904.8 bits (2337), Expect = 1.8e-259
Identity = 430/567 (75.84%), Postives = 496/567 (87.48%), Query Frame = 0


Query: 2    TGKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNRKDWSKWKEAIQAELNSLT 61
            TG++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R DW KWKEAIQAELNSLT
Sbjct: 508  TGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 567

Query: 62   KCEVFGPVVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGLSQRSGIDYEETYSP 121
            K EVFGPVV TP+ VKPVG+KWVFVRKRNENNE+ RYKARLVAQG SQR GIDYEETYSP
Sbjct: 568  KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSP 627

Query: 122  VVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLKNEIYMKIPEGFKIPESYNSNSREL 181
            V+DAIT R+LISLAV E LDM LMDV+TAYLYGS+ N+IYMKIPEGFK+P++ N+  R +
Sbjct: 628  VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 687

Query: 182  CSIKLQRSLYGLKQSRRMWYNRLSEYLLKEGYQNNPIYPCVFIKKSQSGFAIIAVYVDDL 241
             SIKLQRSLYGLKQS RMWYNRLSEYLLKEGY NNPI PC+FIKKS++GFAIIAVYVDDL
Sbjct: 688  YSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDL 747

Query: 242  NIIGTPEELSKAIEYLKKEFEMKDLGKTKFCLGLQVEHLADGIFIHQSTYTKKILKRFYM 301
            N++GTPEEL++   YLKKEFEMKDLGKTKFCLGLQ+EH  +G+ +HQSTY KK+LKRFYM
Sbjct: 748  NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYM 807

Query: 302  DKAHPLNIPMVVRSLDVKKDIFRLREDNEELLGPEVSYLSAIGALMYLANNTRPDIAFSV 361
            DKAHPL+ PMVVRSLDVKKD FR  E +EELLGPEV YL+AIGALMYLAN TRPDIAFSV
Sbjct: 808  DKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLNAIGALMYLANCTRPDIAFSV 867

Query: 362  NLLARYSSSPTKRHWNGVKHVLRHLRGTIDMGLFYSNKSNFDLVGYADAGYLSDPHKAIS 421
            NLLARYSS+PT+RHWNG+KH+LR+LRGT DMGLFYS +S   L+GYADAGYLSDPHK  S
Sbjct: 868  NLLARYSSAPTRRHWNGIKHILRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRS 927

Query: 422  QTGYMFTCGGTAISWRSVKQTMTATSSNHAEILAIHETSKEYVWLRSMTHHIRETCGLSF 481
            QTGY+F C GTAISWRSVKQTM ATSSNH+EILAIHE S+E +WLRSM  HIRE+CGLS 
Sbjct: 928  QTGYVFNCNGTAISWRSVKQTMVATSSNHSEILAIHEASRECIWLRSMIQHIRESCGLSS 987

Query: 482  SKNLPTILFEHNTACIVQIKGGYIKGGRTKHISPKLFYTHDLEENGDISIQQISSKDNLV 541
             K  PT LFE N ACI QI GGYIKG RTKHISPK FYTH+L+++G+I +QQI S DNL 
Sbjct: 988  IKGGPTTLFEDNAACIAQITGGYIKGDRTKHISPKFFYTHELQKSGEIDVQQIRSSDNLA 1047

Query: 542  DLFTKALPTSTFEKLVHNIGMRRLREL 569
            DLFTK+LPTSTF+KL+H IGMR+L+++
Sbjct: 1048 DLFTKSLPTSTFKKLIHRIGMRQLKDI 1074

[Close]

BLAST of Cmc02g0052491 vs. ExPASy TrEMBL
Match: A0A438ET65 (Copia protein OS=Vitis vinifera OX=29760 GN=GIP_127 PE=4 SV=1)

HSP 1 Score: 902.9 bits (2332), Expect = 6.8e-259
Identity = 429/567 (75.66%), Postives = 495/567 (87.30%), Query Frame = 0


Query: 2    TGKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNRKDWSKWKEAIQAELNSLT 61
            TG++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R DW KWKEAIQAELNSLT
Sbjct: 518  TGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 577

Query: 62   KCEVFGPVVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGLSQRSGIDYEETYSP 121
            K EVFGPVV TP+ VKPVG+KWVFVRKRNENNE+ RYKARLVAQG SQR GIDYEETYSP
Sbjct: 578  KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSP 637

Query: 122  VVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLKNEIYMKIPEGFKIPESYNSNSREL 181
            V+DAIT R+LISLAV E LDM LMDV+TAYLYGS+ N+IYMKIPEGFK+P++ N+  R +
Sbjct: 638  VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 697

Query: 182  CSIKLQRSLYGLKQSRRMWYNRLSEYLLKEGYQNNPIYPCVFIKKSQSGFAIIAVYVDDL 241
             SIKLQRSLYGLKQS RMWYNRLSEYLLKEGY NNPI PC+FIKKS++GFAIIAVYVDDL
Sbjct: 698  YSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDL 757

Query: 242  NIIGTPEELSKAIEYLKKEFEMKDLGKTKFCLGLQVEHLADGIFIHQSTYTKKILKRFYM 301
            N++GTPEEL++   YLKKEFEMKDLGKTKFCLGLQ+EH  +G+ +HQSTY KK+LKRFYM
Sbjct: 758  NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYM 817

Query: 302  DKAHPLNIPMVVRSLDVKKDIFRLREDNEELLGPEVSYLSAIGALMYLANNTRPDIAFSV 361
            DKAHPL+ PMVVRSLDVKKD FR  E +EELLGPEV YLSAIGALMYLAN TRPDIAFSV
Sbjct: 818  DKAHPLSSPMVVRSLDVKKDSFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSV 877

Query: 362  NLLARYSSSPTKRHWNGVKHVLRHLRGTIDMGLFYSNKSNFDLVGYADAGYLSDPHKAIS 421
            NLLA+YSS+PT+RHWNG+KH+LR+LRGT DMGLFYS +S   L+GYADAGYLSDPHK  S
Sbjct: 878  NLLAKYSSAPTRRHWNGIKHILRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRS 937

Query: 422  QTGYMFTCGGTAISWRSVKQTMTATSSNHAEILAIHETSKEYVWLRSMTHHIRETCGLSF 481
            QTGY+F C GTAISWRSVKQTM ATSSNH+EILAIHE S+E +WLRSM  HIRE+CGLS 
Sbjct: 938  QTGYVFNCNGTAISWRSVKQTMVATSSNHSEILAIHEASRECIWLRSMIQHIRESCGLSS 997

Query: 482  SKNLPTILFEHNTACIVQIKGGYIKGGRTKHISPKLFYTHDLEENGDISIQQISSKDNLV 541
             K  PT LFE N ACI QI GGYIKG RTKHISPK FY H+L+++G+I +QQI S DNL 
Sbjct: 998  IKGGPTTLFEDNAACIAQITGGYIKGDRTKHISPKFFYIHELQKSGEIDVQQIRSSDNLA 1057

Query: 542  DLFTKALPTSTFEKLVHNIGMRRLREL 569
            DLFTK+LPTSTF+KL+H IGMR+L+++
Sbjct: 1058 DLFTKSLPTSTFKKLIHRIGMRQLKDI 1084

[Close]

BLAST of Cmc02g0052491 vs. ExPASy TrEMBL
Match: A0A438K4P3 (Copia protein OS=Vitis vinifera OX=29760 GN=GIP_114 PE=4 SV=1)

HSP 1 Score: 901.4 bits (2328), Expect = 2.0e-258
Identity = 429/567 (75.66%), Postives = 495/567 (87.30%), Query Frame = 0


Query: 2    TGKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNRKDWSKWKEAIQAELNSLT 61
            TG++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R DW KWKEAIQAELNSLT
Sbjct: 518  TGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 577

Query: 62   KCEVFGPVVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGLSQRSGIDYEETYSP 121
            K EVFGPVV TP+ VKPVG+KWVFVRKRNENNE+ RYKARLVAQG SQR GIDYEETYSP
Sbjct: 578  KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSP 637

Query: 122  VVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLKNEIYMKIPEGFKIPESYNSNSREL 181
            V+DAIT R+LISLAV E LDM LMDV+TAYLYGS+ N+IYMKIPEGFK+P++ N+  R +
Sbjct: 638  VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 697

Query: 182  CSIKLQRSLYGLKQSRRMWYNRLSEYLLKEGYQNNPIYPCVFIKKSQSGFAIIAVYVDDL 241
             SIKLQRSLYGLKQS RMWYNRLSEYLLK+GY NNPI PC+FIKKS++GFAIIAVYVDDL
Sbjct: 698  YSIKLQRSLYGLKQSGRMWYNRLSEYLLKKGYVNNPICPCIFIKKSETGFAIIAVYVDDL 757

Query: 242  NIIGTPEELSKAIEYLKKEFEMKDLGKTKFCLGLQVEHLADGIFIHQSTYTKKILKRFYM 301
            N++GTPEEL++   YLKKEFEMKDLGKTKFCLGLQ+EH  +G+ +HQSTY KK+LK FYM
Sbjct: 758  NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKCFYM 817

Query: 302  DKAHPLNIPMVVRSLDVKKDIFRLREDNEELLGPEVSYLSAIGALMYLANNTRPDIAFSV 361
            DKAHPL+ PMVVRSLDVKKD FR  E +EELLGPEV YLSAIGALMYLAN TRPDIAFSV
Sbjct: 818  DKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSV 877

Query: 362  NLLARYSSSPTKRHWNGVKHVLRHLRGTIDMGLFYSNKSNFDLVGYADAGYLSDPHKAIS 421
            NLLARYSS+PT+RHWNG+KH+LR+LRGT DMGLFYS +S   L+GYADAGYLSDPHK  S
Sbjct: 878  NLLARYSSTPTRRHWNGIKHILRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRS 937

Query: 422  QTGYMFTCGGTAISWRSVKQTMTATSSNHAEILAIHETSKEYVWLRSMTHHIRETCGLSF 481
            QTGY+F C GTAISWRSVKQTM ATSSNH+EILAIHE S+E +WLRSM  HIRE+CGLS 
Sbjct: 938  QTGYVFNCNGTAISWRSVKQTMVATSSNHSEILAIHEASRECIWLRSMIQHIRESCGLSS 997

Query: 482  SKNLPTILFEHNTACIVQIKGGYIKGGRTKHISPKLFYTHDLEENGDISIQQISSKDNLV 541
             K  PT LFE N ACI QI GGYIKG RTKHISPK FYTH+L+++G+I +QQI S DNL 
Sbjct: 998  IKGGPTTLFEDNAACIAQITGGYIKGDRTKHISPKFFYTHELQKSGEIDVQQIRSSDNLA 1057

Query: 542  DLFTKALPTSTFEKLVHNIGMRRLREL 569
            DLFTK+LPTSTF+KL+H IGMR+L+++
Sbjct: 1058 DLFTKSLPTSTFKKLIHRIGMRQLKDI 1084

[Close]

BLAST of Cmc02g0052491 vs. ExPASy TrEMBL
Match: A0A438ETG9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1001 PE=4 SV=1)

HSP 1 Score: 900.2 bits (2325), Expect = 4.4e-258
Identity = 429/567 (75.66%), Postives = 494/567 (87.13%), Query Frame = 0


Query: 2    TGKRWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDECRNRKDWSKWKEAIQAELNSLT 61
            TG++W+R N+V++NIFA+ VA +II  +ED EP++V+ECR+R DW KWKEAIQAELNSLT
Sbjct: 518  TGEKWDRNNIVINNIFAFQVAFDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 577

Query: 62   KCEVFGPVVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGLSQRSGIDYEETYSP 121
            K EVFGPVV TP+ VKPVG+KWVFVRKRNENNE+ RYKARLVAQG SQR G+DYEETYSP
Sbjct: 578  KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGVDYEETYSP 637

Query: 122  VVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLKNEIYMKIPEGFKIPESYNSNSREL 181
            V+DAIT R+LISLAV E LDM LMDV+TAYLYGS+ N+IYMKIPEGFK+P++ N+  R +
Sbjct: 638  VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 697

Query: 182  CSIKLQRSLYGLKQSRRMWYNRLSEYLLKEGYQNNPIYPCVFIKKSQSGFAIIAVYVDDL 241
             SIKLQRSLYGLKQS RMWYNRLSEYLLKEGY NNPI PC+FIKK ++GFAIIAVYVDDL
Sbjct: 698  YSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKKLETGFAIIAVYVDDL 757

Query: 242  NIIGTPEELSKAIEYLKKEFEMKDLGKTKFCLGLQVEHLADGIFIHQSTYTKKILKRFYM 301
            N++GTPEEL++   YLKKEFEMKDLGKTKFCLGLQ+EH  +G+ +HQSTY KK+LKRFYM
Sbjct: 758  NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYM 817

Query: 302  DKAHPLNIPMVVRSLDVKKDIFRLREDNEELLGPEVSYLSAIGALMYLANNTRPDIAFSV 361
            DKAHPL+ PMVVRSLDVKKD FR  E +EELLGPEV YLSAIGALMYLAN TRPDIAFSV
Sbjct: 818  DKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSV 877

Query: 362  NLLARYSSSPTKRHWNGVKHVLRHLRGTIDMGLFYSNKSNFDLVGYADAGYLSDPHKAIS 421
            NLLARYSSSPT+RHWNG+KH+LR+LRGT DMGLFYS +S   L+GYADAGYLSDPHK  S
Sbjct: 878  NLLARYSSSPTRRHWNGIKHILRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRS 937

Query: 422  QTGYMFTCGGTAISWRSVKQTMTATSSNHAEILAIHETSKEYVWLRSMTHHIRETCGLSF 481
            QTGY+F   GTAISWRSVKQTM ATSSNH+EILAIHE S+E +WLRSM  HIRE+CGLS 
Sbjct: 938  QTGYVFNYNGTAISWRSVKQTMVATSSNHSEILAIHEASRECIWLRSMIQHIRESCGLSS 997

Query: 482  SKNLPTILFEHNTACIVQIKGGYIKGGRTKHISPKLFYTHDLEENGDISIQQISSKDNLV 541
             K  PT LFE N ACI QI GGYIKG RTKHISPK FYTH+L+++G+I +QQI S DNL 
Sbjct: 998  IKGDPTTLFEDNAACIAQITGGYIKGDRTKHISPKFFYTHELQKSGEIDVQQIRSSDNLA 1057

Query: 542  DLFTKALPTSTFEKLVHNIGMRRLREL 569
            DLFTK+LPTSTF+KL+H IGMR+L+++
Sbjct: 1058 DLFTKSLPTSTFKKLIHKIGMRQLKDI 1084

[Close]

BLAST of Cmc02g0052491 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 245.7 bits (626), Expect = 8.7e-65
Identity = 159/485 (32.78%), Postives = 252/485 (51.96%), Query Frame = 0


Query: 33  EPKSVDECRNRKDWSKWKEAIQAELNSLTKCEVFGPVVYTPKGVKPVGFKWVFVRKRNEN 92
           EP + +E    K++  W  A+  E+ ++     +  +   P   KP+G KWV+  K N +
Sbjct: 85  EPSTYNEA---KEFLVWCGAMDDEIGAMETTHTW-EICTLPPNKKPIGCKWVYKIKYNSD 144

Query: 93  NEVTRYKARLVAQGLSQRSGIDYEETYSPVVDAITLRYLISLAVCENLDMHLMDVVTAYL 152
             + RYKARLVA+G +Q+ GID+ ET+SPV    +++ +++++   N  +H +D+  A+L
Sbjct: 145 GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFL 204

Query: 153 YGSLKNEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSRRMWYNRLSEYLLKEG 212
            G L  EIYMK+P G+   +  +     +C +K  +S+YGLKQ+ R W+ + S  L+  G
Sbjct: 205 NGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLK--KSIYGLKQASRQWFLKFSVTLIGFG 264

Query: 213 YQNNPIYPCVFIKKSQSGFAIIAVYVDDLNIIGTPE-ELSKAIEYLKKEFEMKDLGKTKF 272
           +  +      F+K + + F  + VYVDD+ I    +  + +    LK  F+++DLG  K+
Sbjct: 265 FVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKY 324

Query: 273 CLGLQVEHLADGIFIHQSTYTKKILKRFYMDKAHPLNIPM---VVRSLDVKKDIFRLRED 332
            LGL++   A GI I Q  Y   +L    +    P ++PM   V  S     D    +  
Sbjct: 325 FLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAK-- 384

Query: 333 NEELLGPEVSYLSAIGALMYLANNTRPDIAFSVNLLARYSSSPTKRHWNGVKHVLRHLRG 392
                    +Y   IG LMYL   TR DI+F+VN L+++S +P   H   V  +L +++G
Sbjct: 385 ---------AYRRLIGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKG 444

Query: 393 TIDMGLFYSNKSNFDLVGYADAGYLSDPHKAISQTGYMFTCGGTAISWRSVKQTMTATSS 452
           T+  GLFYS+++   L  ++DA + S      S  GY    G + ISW+S KQ + + SS
Sbjct: 445 TVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSS 504

Query: 453 NHAEILAIHETSKEYVWLRSMTHHIRETCGLSFSKNLPTILFEHNTACIVQIKGGYIKGG 512
             AE  A+   + E +WL      ++    L  SK  PT+LF  NTA I  I    +   
Sbjct: 505 AEAEYRALSFATDEMMWLAQFFRELQ----LPLSK--PTLLFCDNTAAI-HIATNAVFHE 544

Query: 513 RTKHI 514
           RTKHI
Sbjct: 565 RTKHI 544

[Close]

BLAST of Cmc02g0052491 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 111.3 bits (277), Expect = 2.6e-24
Identity = 70/234 (29.91%), Postives = 117/234 (50.00%), Query Frame = 0


Query: 234 IAVYVDDLNIIGTPEE-LSKAIEYLKKEFEMKDLGKTKFCLGLQVEHLADGIFIHQSTYT 293
           + +YVDD+ + G+    L+  I  L   F MKDLG   + LG+Q++    G+F+ Q+ Y 
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 294 KKILKRFYMDKAHPLNIPMVVRSLDVKKDIFRLREDNEELLGPEVS-YLSAIGALMYLAN 353
           ++IL    M    P++ P+ +          +L         P+ S + S +GAL YL  
Sbjct: 63  EQILNNAGMLDCKPMSTPLPL----------KLNSSVSTAKYPDPSDFRSIVGALQYL-T 122

Query: 354 NTRPDIAFSVNLLARYSSSPTKRHWNGVKHVLRHLRGTIDMGLFYSNKSNFDLVGYADAG 413
            TRPDI+++VN++ +    PT   ++ +K VLR+++GTI  GL+    S  ++  + D+ 
Sbjct: 123 LTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSD 182

Query: 414 YLSDPHKAISQTGYMFTCGGTAISWRSVKQTMTATSSNHAEILAIHETSKEYVW 466
           +        S TG+    G   ISW + +Q   + SS   E  A+  T+ E  W
Sbjct: 183 WAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc02g0052491 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 65.1 bits (157), Expect = 2.1e-10
Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 0


Query: 33  EPKSVDECRNRKDWSKWKEAIQAELNSLTKCEVFGPVVYTPKGVKPVGFKWVFVRKRNEN 92
           EPKSV        W    +A+Q EL++L++ + +  +V  P     +G KWVF  K + +
Sbjct: 27  EPKSVIFALKDPGWC---QAMQEELDALSRNKTW-ILVPPPVNQNILGCKWVFKTKLHSD 86

Query: 93  NEVTRYKARLVAQGLSQRSGIDYEETYSPVVDAITLRYLISLA 136
             + R KARLVA+G  Q  GI + ETYSPVV   T+R ++++A
Sbjct: 87  GTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc02g0052491 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 61.2 bits (147), Expect = 3.0e-09
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 0


Query: 347 MYLANNTRPDIAFSVNLLARYSSSPTKRHWNGVKHVLRHLRGTIDMGLFYSNKSNFDLVG 406
           MYL   TRPD+ F+VN L+++SS+        V  VL +++GT+  GLFYS  S+  L  
Sbjct: 1   MYL-TITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 60

Query: 407 YADAGYLSDPHKAISQTGY 426
           +AD+ + S P    S TG+
Sbjct: 61  FADSDWASCPDTRRSVTGF 78

The following BLAST results are available for this feature:

BLAST of Cmc02g0052491 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW59049.1	1.7e-259	76.01	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW51062.1	3.7e-259	75.84	Copia protein [Vitis vinifera]	[more]
RVW50867.1	1.4e-258	75.66	Copia protein [Vitis vinifera]	[more]
RVX16158.1	4.1e-258	75.66	Copia protein [Vitis vinifera]	[more]
RVW51051.1	9.1e-258	75.66	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Cmc02g0052491 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.1e-85	34.94	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.9e-81	34.34	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	5.5e-72	31.59	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	7.9e-71	31.02	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q03619	4.9e-36	26.30	Transposon Ty1-ER2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of Cmc02g0052491 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438FGC5	8.1e-260	76.01	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438ETU3	1.8e-259	75.84	Copia protein OS=Vitis vinifera OX=29760 GN=GIP_69 PE=4 SV=1	[more]
A0A438ET65	6.8e-259	75.66	Copia protein OS=Vitis vinifera OX=29760 GN=GIP_127 PE=4 SV=1	[more]
A0A438K4P3	2.0e-258	75.66	Copia protein OS=Vitis vinifera OX=29760 GN=GIP_114 PE=4 SV=1	[more]
A0A438ETG9	4.4e-258	75.66	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of Cmc02g0052491 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	8.7e-65	32.78	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	2.6e-24	29.91	DNA/RNA polymerases superfamily protein	[more]
ATMG00820.1	2.1e-10	38.83	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00240.1	3.0e-09	40.51	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 69..311 e-value: 9.7E-62 score: 208.7
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 22..414
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 405..550 e-value: 3.38719E-43 score: 149.156
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 70..466

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0052491.1	Cmc02g0052491.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding