Cmc02g0052201 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0052201
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr02: 19484524 .. 19485297 (+)
RNA-Seq Expression	Cmc02g0052201
Synteny	Cmc02g0052201

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCCAGTCATCTCTGCTCCTGTCACTGATAACATTATATATCAGTGGCATCTTCGCCTAGGTCATGCATTCTCTTTTAAACTTCGTAGTTTAGCTTCTACTGGTATTTTTAATAATGTTTCTAAGTTTAGTCCTTTTAATTTTTTAATTTACAAACTTGTGAAACAACCTGCTTTGTCCTTTATTAATTCTGCTTCTTTATGTGATAAATCTTTTGGTCTAATTCACTCTGATATTTGGGGTCCTACTCCATGTACTAATGTTAATGGTTATCGATATTTTGTCTTATTTATTGATGACTATTCTCGTTTTACTTAGATTTATTTTCTTAAAAATTGTTCCTCCTTGTATCAAATCTATGTTGATTTTGCAAATATGGTTCACACACAATTCTCTAGCACAATCAAAATTCTTCGCACCGATAGTGCAATGGAATATAAGGACTCTCGCTTTCTTTCTTTCATTGCCCAACAAGGCGCCTTGATTCAATGCTCATGTCCTCACACCTCCCAGCAAAATAGACGAGCAGAACACAAACATTGTCACATTCTAAACTCTGTTCTTGCTCAACTCCTCTCTGCTTCCTGTTCTGAAAATTTTTGGAGAGAGGCTACCTTCACCTCTATTTATGTCATCAACTGCCTTCCTTCTCAAGTCGTACACAATGTTTGTCCCTTTGAACGACTATACGATACTCCCACTTCTTACTCTAATCTCAAAGTATTTGGTTGTGCATGCTTTGTGTTATTACATCCTCATGAACATACCTAA

mRNA sequence

ATGTTTCCAGTCATCTCTGCTCCTGTCACTGATAACATTATATATCAGTGGCATCTTCGCCTAGGTCATGCATTCTCTTTTAAACTTCGTAGTTTAGCTTCTACTGGTATTTTTAATAATGTTTCTAAGTTTAGTCCTTTTAATTTTTTAATTTACAAACTTGTGAAACAACCTGCTTTGTCCTTTATTAATTCTGCTTCTTTATGTGATAAATCTTTTGGTCTAATTCACTCTGATATTTGGGGTCCTACTCCATGTACTAATATTTATTTTCTTAAAAATTGTTCCTCCTTGTATCAAATCTATGTTGATTTTGCAAATATGGTTCACACACAATTCTCTAGCACAATCAAAATTCTTCGCACCGATAGTGCAATGGAATATAAGGACTCTCGCTTTCTTTCTTTCATTGCCCAACAAGGCGCCTTGATTCAATGCTCATGTCCTCACACCTCCCAGCAAAATAGACGAGCAGAACACAAACATTGTCACATTCTAAACTCTGTTCTTGCTCAACTCCTCTCTGCTTCCTGTTCTGAAAATTTTTGGAGAGAGGCTACCTTCACCTCTATTTATGTCATCAACTGCCTTCCTTCTCAAGTCGTACACAATGTTTGTCCCTTTGAACGACTATACGATACTCCCACTTCTTACTCTAATCTCAAAGTATTTGGTTGTGCATGCTTTGTGTTATTACATCCTCATGAACATACCTAA

Coding sequence (CDS)

ATGTTTCCAGTCATCTCTGCTCCTGTCACTGATAACATTATATATCAGTGGCATCTTCGCCTAGGTCATGCATTCTCTTTTAAACTTCGTAGTTTAGCTTCTACTGGTATTTTTAATAATGTTTCTAAGTTTAGTCCTTTTAATTTTTTAATTTACAAACTTGTGAAACAACCTGCTTTGTCCTTTATTAATTCTGCTTCTTTATGTGATAAATCTTTTGGTCTAATTCACTCTGATATTTGGGGTCCTACTCCATGTACTAATATTTATTTTCTTAAAAATTGTTCCTCCTTGTATCAAATCTATGTTGATTTTGCAAATATGGTTCACACACAATTCTCTAGCACAATCAAAATTCTTCGCACCGATAGTGCAATGGAATATAAGGACTCTCGCTTTCTTTCTTTCATTGCCCAACAAGGCGCCTTGATTCAATGCTCATGTCCTCACACCTCCCAGCAAAATAGACGAGCAGAACACAAACATTGTCACATTCTAAACTCTGTTCTTGCTCAACTCCTCTCTGCTTCCTGTTCTGAAAATTTTTGGAGAGAGGCTACCTTCACCTCTATTTATGTCATCAACTGCCTTCCTTCTCAAGTCGTACACAATGTTTGTCCCTTTGAACGACTATACGATACTCCCACTTCTTACTCTAATCTCAAAGTATTTGGTTGTGCATGCTTTGTGTTATTACATCCTCATGAACATACCTAA

Protein sequence

MFPVISAPVTDNIIYQWHLRLGHAFSFKLRSLASTGIFNNVSKFSPFNFLIYKLVKQPALSFINSASLCDKSFGLIHSDIWGPTPCTNIYFLKNCSSLYQIYVDFANMVHTQFSSTIKILRTDSAMEYKDSRFLSFIAQQGALIQCSCPHTSQQNRRAEHKHCHILNSVLAQLLSASCSENFWREATFTSIYVINCLPSQVVHNVCPFERLYDTPTSYSNLKVFGCACFVLLHPHEHT

Homology

[Close]

BLAST of Cmc02g0052201 vs. NCBI nr
Match: KAA0043149.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK22647.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 369.8 bits (948), Expect = 1.8e-98
Identity = 184/257 (71.60%), Postives = 202/257 (78.60%), Query Frame = 0


Query: 1   MFPVISAPVTDNIIYQWHLRLGHAFSFKLRSLASTGIFNNVSKFSPFNFLIYKLVKQPAL 60
           +FP ISAPVTDN ++QWHLRLGHA S KLRSL STG+ NNVS+F+ F+ L  K+ KQPAL
Sbjct: 441 VFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNVSQFNTFDCLHCKMAKQPAL 500

Query: 61  SFINSASLCDKSFGLIHSDIWGPTPC-------------------TNIYFLKNCSSLYQI 120
           SF  SASLCDK FGLIHSDIWGP PC                   T IYFL+N SSLYQI
Sbjct: 501 SFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDDYSRFTWIYFLRNRSSLYQI 560

Query: 121 YVDFANMVHTQFSSTIKILRTDSAMEYKDSRFLSFIAQQGALIQCSCPHTSQQNRRAEHK 180
           YVDFANM+ TQFSS IKILRTD+AMEYKDSRFLSF+AQQG LIQ SCPHTSQQN RAE K
Sbjct: 561 YVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCPHTSQQNGRAERK 620

Query: 181 HCHILNSVLAQLLSASCSENFWREATFTSIYVINCLPSQVVHNVCPFERLYDTPTSYSNL 239
           H HIL+SV AQLLS SC E FW EA  TS+YVIN LPSQV+HN+ PFERLY TP +YS+L
Sbjct: 621 HRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVIHNISPFERLYGTPPTYSHL 680

[Close]

BLAST of Cmc02g0052201 vs. NCBI nr
Match: KAA0065380.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 369.8 bits (948), Expect = 1.8e-98
Identity = 184/257 (71.60%), Postives = 202/257 (78.60%), Query Frame = 0


Query: 1   MFPVISAPVTDNIIYQWHLRLGHAFSFKLRSLASTGIFNNVSKFSPFNFLIYKLVKQPAL 60
           +FP ISAPVTDN ++QWHLRLGHA S KLRSL STG+ NNVS+F+ F+ L  K+ KQPAL
Sbjct: 409 VFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNVSQFNTFDCLHCKMAKQPAL 468

Query: 61  SFINSASLCDKSFGLIHSDIWGPTPC-------------------TNIYFLKNCSSLYQI 120
           SF  SASLCDK FGLIHSDIWGP PC                   T IYFL+N SSLYQI
Sbjct: 469 SFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDDYSRFTWIYFLRNRSSLYQI 528

Query: 121 YVDFANMVHTQFSSTIKILRTDSAMEYKDSRFLSFIAQQGALIQCSCPHTSQQNRRAEHK 180
           YVDFANM+ TQFSS IKILRTD+AMEYKDSRFLSF+AQQG LIQ SCPHTSQQN RAE K
Sbjct: 529 YVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCPHTSQQNGRAERK 588

Query: 181 HCHILNSVLAQLLSASCSENFWREATFTSIYVINCLPSQVVHNVCPFERLYDTPTSYSNL 239
           H HIL+SV AQLLS SC E FW EA  TS+YVIN LPSQV+HN+ PFERLY TP +YS+L
Sbjct: 589 HRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVIHNISPFERLYGTPPTYSHL 648

[Close]

BLAST of Cmc02g0052201 vs. NCBI nr
Match: KAA0036574.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 369.8 bits (948), Expect = 1.8e-98
Identity = 184/257 (71.60%), Postives = 202/257 (78.60%), Query Frame = 0


Query: 1   MFPVISAPVTDNIIYQWHLRLGHAFSFKLRSLASTGIFNNVSKFSPFNFLIYKLVKQPAL 60
           +FP ISAPVTDN ++QWHLRLGHA S KLRSL STG+ NNVS+F+ F+ L  K+ KQPAL
Sbjct: 441 VFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNVSQFNTFDCLHCKMAKQPAL 500

Query: 61  SFINSASLCDKSFGLIHSDIWGPTPC-------------------TNIYFLKNCSSLYQI 120
           SF  SASLCDK FGLIHSDIWGP PC                   T IYFL+N SSLYQI
Sbjct: 501 SFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDDYSRFTWIYFLRNRSSLYQI 560

Query: 121 YVDFANMVHTQFSSTIKILRTDSAMEYKDSRFLSFIAQQGALIQCSCPHTSQQNRRAEHK 180
           YVDFANM+ TQFSS IKILRTD+AMEYKDSRFLSF+AQQG LIQ SCPHTSQQN RAE K
Sbjct: 561 YVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCPHTSQQNGRAERK 620

Query: 181 HCHILNSVLAQLLSASCSENFWREATFTSIYVINCLPSQVVHNVCPFERLYDTPTSYSNL 239
           H HIL+SV AQLLS SC E FW EA  TS+YVIN LPSQV+HN+ PFERLY TP +YS+L
Sbjct: 621 HRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVIHNISPFERLYGTPPTYSHL 680

[Close]

BLAST of Cmc02g0052201 vs. NCBI nr
Match: KAA0037189.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK13883.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 347.1 bits (889), Expect = 1.2e-91
Identity = 172/238 (72.27%), Postives = 188/238 (78.99%), Query Frame = 0


Query: 1   MFPVISAPVTDNIIYQWHLRLGHAFSFKLRSLASTGIFNNVSKFSPFNFLIYKLVKQPAL 60
           MFP ISAP TD+ I+QWHLRLGHA S KLRSLAS G  NNVSKFS  ++L  KL KQ AL
Sbjct: 337 MFPAISAPATDDTIFQWHLRLGHASSDKLRSLASNGHLNNVSKFSTLDYLNCKLAKQLAL 396

Query: 61  SFINSASLCDKSFGLIHSDIWGPTPCTNIYFLKNCSSLYQIYVDFANMVHTQFSSTIKIL 120
           SF NSASLCDK FGLIHSDIWGP PC  +             V+F NMV TQFSSTIKIL
Sbjct: 397 SFPNSASLCDKPFGLIHSDIWGPAPCATVN-----------DVEFVNMVQTQFSSTIKIL 456

Query: 121 RTDSAMEYKDSRFLSFIAQQGALIQCSCPHTSQQNRRAEHKHCHILNSVLAQLLSASCSE 180
           RTD+AM+YKDSRFLSF+ QQG LIQ SCPHTSQQN RAE KH HIL+SV AQLLSASC +
Sbjct: 457 RTDNAMKYKDSRFLSFLTQQGTLIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSASCPK 516

Query: 181 NFWREATFTSIYVINCLPSQVVHNVCPFERLYDTPTSYSNLKVFGCACFVLLHPHEHT 239
           NFW EA  TS+YVIN LPSQV+HN+ PFERL+ TP SYSNLK+FGC CFVLLHPHEHT
Sbjct: 517 NFWGEAAITSVYVINRLPSQVIHNISPFERLHGTPPSYSNLKIFGCECFVLLHPHEHT 563

[Close]

BLAST of Cmc02g0052201 vs. NCBI nr
Match: TYK15021.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 322.4 bits (825), Expect = 3.3e-84
Identity = 161/255 (63.14%), Postives = 182/255 (71.37%), Query Frame = 0


Query: 3   PVISAPVTDNIIYQWHLRLGHAFSFKLRSLASTGIFNNVSKFSPFNFLIYKLVKQPALSF 62
           P ISAPVTD+  YQWHLRLGHA   KLR L S    N+++KF PFN L  KL KQPALSF
Sbjct: 436 PSISAPVTDSDTYQWHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSF 495

Query: 63  INSASLCDKSFGLIHSDIWGPTPCTN-------------------IYFLKNCSSLYQIYV 122
             S S+CDK F LIHSDIWGP P T                    IYFLK+ S L + Y+
Sbjct: 496 SKSTSICDKPFDLIHSDIWGPAPTTTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYI 555

Query: 123 DFANMVHTQFSSTIKILRTDSAMEYKDSRFLSFIAQQGALIQCSCPHTSQQNRRAEHKHC 182
           +FANM+ TQFS  IK LRTD+A+EYKDS  LSF++QQG L+Q SCPHTSQQN RAE KH 
Sbjct: 556 EFANMIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHR 615

Query: 183 HILNSVLAQLLSASCSENFWREATFTSIYVINCLPSQVVHNVCPFERLYDTPTSYSNLKV 239
           HIL+SV A LLSASC E FW EA  TS+Y IN LPS V+ N+ PFE+LY TP +YSNLKV
Sbjct: 616 HILDSVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPPNYSNLKV 675

[Close]

BLAST of Cmc02g0052201 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.7e-23
Identity = 73/254 (28.74%), Postives = 119/254 (46.85%), Query Frame = 0


Query: 4   VISAPVTDNIIYQWHLRLGHAFSFKLRSLASTGIFNNVSKFSPFNFLI----YKLVKQPA 63
           + ++P +      WH RLGH     L S+ S    +++   +P + L+      + K   
Sbjct: 433 MFASPCSKATHSSWHSRLGHPSLAILNSVISN---HSLPVLNPSHKLLSCSDCFINKSHK 492

Query: 64  LSFINSASLCDKSFGLIHSDIWGP------------------TPCTNIYFLKNCSSLYQI 123
           + F NS     K    I+SD+W                    T  T +Y LK  S +   
Sbjct: 493 VPFSNSTITSSKPLEYIYSDVWSSPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDT 552

Query: 124 YVDFANMVHTQFSSTIKILRTDSAMEYKDSRFLSFIAQQGALIQCSCPHTSQQNRRAEHK 183
           ++ F ++V  +F + I  L +D+  E+   R   +++Q G     S PHT + N  +E K
Sbjct: 553 FIIFKSLVENRFQTRIGTLYSDNGGEFVVLR--DYLSQHGISHFTSPPHTPEHNGLSERK 612

Query: 184 HCHILNSVLAQLLSASCSENFWREATFTSIYVINCLPSQVVHNVCPFERLYDTPTSYSNL 236
           H HI+   L  L  AS  + +W  A   ++Y+IN LP+ ++    PF++L+  P +Y  L
Sbjct: 613 HRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKL 672

[Close]

BLAST of Cmc02g0052201 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.7e-22
Identity = 75/242 (30.99%), Postives = 115/242 (47.52%), Query Frame = 0


Query: 17  WHLRLGHAFSFKLRSLAST---GIFNNVSKF-SPFNFLIYKLVKQP-ALSFINSASLCDK 76
           WH RLGH     L S+ S     + N   KF S  + LI K  K P + S INS     +
Sbjct: 467 WHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINST----R 526

Query: 77  SFGLIHSDIWGP------------------TPCTNIYFLKNCSSLYQIYVDFANMVHTQF 136
               I+SD+W                    T  T +Y LK  S + + ++ F N++  +F
Sbjct: 527 PLEYIYSDVWSSPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRF 586

Query: 137 SSTIKILRTDSAMEYKDSRFLSFIAQQGALIQCSCPHTSQQNRRAEHKHCHILNSVLAQL 196
            + I    +D+  E+       + +Q G     S PHT + N  +E KH HI+ + L  L
Sbjct: 587 QTRIGTFYSDNGGEF--VALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLL 646

Query: 197 LSASCSENFWREATFTSIYVINCLPSQVVHNVCPFERLYDTPTSYSNLKVFGCACFVLLH 236
             AS  + +W  A   ++Y+IN LP+ ++    PF++L+ T  +Y  L+VFGCAC+  L 
Sbjct: 647 SHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLR 702

[Close]

BLAST of Cmc02g0052201 vs. ExPASy TrEMBL
Match: A0A5D3DG18 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00850 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 8.7e-99
Identity = 184/257 (71.60%), Postives = 202/257 (78.60%), Query Frame = 0


Query: 1   MFPVISAPVTDNIIYQWHLRLGHAFSFKLRSLASTGIFNNVSKFSPFNFLIYKLVKQPAL 60
           +FP ISAPVTDN ++QWHLRLGHA S KLRSL STG+ NNVS+F+ F+ L  K+ KQPAL
Sbjct: 441 VFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNVSQFNTFDCLHCKMAKQPAL 500

Query: 61  SFINSASLCDKSFGLIHSDIWGPTPC-------------------TNIYFLKNCSSLYQI 120
           SF  SASLCDK FGLIHSDIWGP PC                   T IYFL+N SSLYQI
Sbjct: 501 SFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDDYSRFTWIYFLRNRSSLYQI 560

Query: 121 YVDFANMVHTQFSSTIKILRTDSAMEYKDSRFLSFIAQQGALIQCSCPHTSQQNRRAEHK 180
           YVDFANM+ TQFSS IKILRTD+AMEYKDSRFLSF+AQQG LIQ SCPHTSQQN RAE K
Sbjct: 561 YVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCPHTSQQNGRAERK 620

Query: 181 HCHILNSVLAQLLSASCSENFWREATFTSIYVINCLPSQVVHNVCPFERLYDTPTSYSNL 239
           H HIL+SV AQLLS SC E FW EA  TS+YVIN LPSQV+HN+ PFERLY TP +YS+L
Sbjct: 621 HRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVIHNISPFERLYGTPPTYSHL 680

[Close]

BLAST of Cmc02g0052201 vs. ExPASy TrEMBL
Match: A0A5A7SZ66 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00840 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 8.7e-99
Identity = 184/257 (71.60%), Postives = 202/257 (78.60%), Query Frame = 0


Query: 1   MFPVISAPVTDNIIYQWHLRLGHAFSFKLRSLASTGIFNNVSKFSPFNFLIYKLVKQPAL 60
           +FP ISAPVTDN ++QWHLRLGHA S KLRSL STG+ NNVS+F+ F+ L  K+ KQPAL
Sbjct: 441 VFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNVSQFNTFDCLHCKMAKQPAL 500

Query: 61  SFINSASLCDKSFGLIHSDIWGPTPC-------------------TNIYFLKNCSSLYQI 120
           SF  SASLCDK FGLIHSDIWGP PC                   T IYFL+N SSLYQI
Sbjct: 501 SFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDDYSRFTWIYFLRNRSSLYQI 560

Query: 121 YVDFANMVHTQFSSTIKILRTDSAMEYKDSRFLSFIAQQGALIQCSCPHTSQQNRRAEHK 180
           YVDFANM+ TQFSS IKILRTD+AMEYKDSRFLSF+AQQG LIQ SCPHTSQQN RAE K
Sbjct: 561 YVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCPHTSQQNGRAERK 620

Query: 181 HCHILNSVLAQLLSASCSENFWREATFTSIYVINCLPSQVVHNVCPFERLYDTPTSYSNL 239
           H HIL+SV AQLLS SC E FW EA  TS+YVIN LPSQV+HN+ PFERLY TP +YS+L
Sbjct: 621 HRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVIHNISPFERLYGTPPTYSHL 680

[Close]

BLAST of Cmc02g0052201 vs. ExPASy TrEMBL
Match: A0A5A7VDW0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00430 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 8.7e-99
Identity = 184/257 (71.60%), Postives = 202/257 (78.60%), Query Frame = 0


Query: 1   MFPVISAPVTDNIIYQWHLRLGHAFSFKLRSLASTGIFNNVSKFSPFNFLIYKLVKQPAL 60
           +FP ISAPVTDN ++QWHLRLGHA S KLRSL STG+ NNVS+F+ F+ L  K+ KQPAL
Sbjct: 409 VFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNVSQFNTFDCLHCKMAKQPAL 468

Query: 61  SFINSASLCDKSFGLIHSDIWGPTPC-------------------TNIYFLKNCSSLYQI 120
           SF  SASLCDK FGLIHSDIWGP PC                   T IYFL+N SSLYQI
Sbjct: 469 SFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDDYSRFTWIYFLRNRSSLYQI 528

Query: 121 YVDFANMVHTQFSSTIKILRTDSAMEYKDSRFLSFIAQQGALIQCSCPHTSQQNRRAEHK 180
           YVDFANM+ TQFSS IKILRTD+AMEYKDSRFLSF+AQQG LIQ SCPHTSQQN RAE K
Sbjct: 529 YVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCPHTSQQNGRAERK 588

Query: 181 HCHILNSVLAQLLSASCSENFWREATFTSIYVINCLPSQVVHNVCPFERLYDTPTSYSNL 239
           H HIL+SV AQLLS SC E FW EA  TS+YVIN LPSQV+HN+ PFERLY TP +YS+L
Sbjct: 589 HRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVIHNISPFERLYGTPPTYSHL 648

[Close]

BLAST of Cmc02g0052201 vs. ExPASy TrEMBL
Match: A0A5D3CPU5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00700 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 6.0e-92
Identity = 172/238 (72.27%), Postives = 188/238 (78.99%), Query Frame = 0


Query: 1   MFPVISAPVTDNIIYQWHLRLGHAFSFKLRSLASTGIFNNVSKFSPFNFLIYKLVKQPAL 60
           MFP ISAP TD+ I+QWHLRLGHA S KLRSLAS G  NNVSKFS  ++L  KL KQ AL
Sbjct: 337 MFPAISAPATDDTIFQWHLRLGHASSDKLRSLASNGHLNNVSKFSTLDYLNCKLAKQLAL 396

Query: 61  SFINSASLCDKSFGLIHSDIWGPTPCTNIYFLKNCSSLYQIYVDFANMVHTQFSSTIKIL 120
           SF NSASLCDK FGLIHSDIWGP PC  +             V+F NMV TQFSSTIKIL
Sbjct: 397 SFPNSASLCDKPFGLIHSDIWGPAPCATVN-----------DVEFVNMVQTQFSSTIKIL 456

Query: 121 RTDSAMEYKDSRFLSFIAQQGALIQCSCPHTSQQNRRAEHKHCHILNSVLAQLLSASCSE 180
           RTD+AM+YKDSRFLSF+ QQG LIQ SCPHTSQQN RAE KH HIL+SV AQLLSASC +
Sbjct: 457 RTDNAMKYKDSRFLSFLTQQGTLIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSASCPK 516

Query: 181 NFWREATFTSIYVINCLPSQVVHNVCPFERLYDTPTSYSNLKVFGCACFVLLHPHEHT 239
           NFW EA  TS+YVIN LPSQV+HN+ PFERL+ TP SYSNLK+FGC CFVLLHPHEHT
Sbjct: 517 NFWGEAAITSVYVINRLPSQVIHNISPFERLHGTPPSYSNLKIFGCECFVLLHPHEHT 563

[Close]

BLAST of Cmc02g0052201 vs. ExPASy TrEMBL
Match: A0A5D3CT53 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00560 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.6e-84
Identity = 161/255 (63.14%), Postives = 182/255 (71.37%), Query Frame = 0


Query: 3   PVISAPVTDNIIYQWHLRLGHAFSFKLRSLASTGIFNNVSKFSPFNFLIYKLVKQPALSF 62
           P ISAPVTD+  YQWHLRLGHA   KLR L S    N+++KF PFN L  KL KQPALSF
Sbjct: 436 PSISAPVTDSDTYQWHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSF 495

Query: 63  INSASLCDKSFGLIHSDIWGPTPCTN-------------------IYFLKNCSSLYQIYV 122
             S S+CDK F LIHSDIWGP P T                    IYFLK+ S L + Y+
Sbjct: 496 SKSTSICDKPFDLIHSDIWGPAPTTTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYI 555

Query: 123 DFANMVHTQFSSTIKILRTDSAMEYKDSRFLSFIAQQGALIQCSCPHTSQQNRRAEHKHC 182
           +FANM+ TQFS  IK LRTD+A+EYKDS  LSF++QQG L+Q SCPHTSQQN RAE KH 
Sbjct: 556 EFANMIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHR 615

Query: 183 HILNSVLAQLLSASCSENFWREATFTSIYVINCLPSQVVHNVCPFERLYDTPTSYSNLKV 239
           HIL+SV A LLSASC E FW EA  TS+Y IN LPS V+ N+ PFE+LY TP +YSNLKV
Sbjct: 616 HILDSVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPPNYSNLKV 675

The following BLAST results are available for this feature:

BLAST of Cmc02g0052201 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043149.1	1.8e-98	71.60	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0065380.1	1.8e-98	71.60	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0036574.1	1.8e-98	71.60	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0037189.1	1.2e-91	72.27	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK15021.1	3.3e-84	63.14	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc02g0052201 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	5.7e-23	28.74	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	3.7e-22	30.99	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc02g0052201 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DG18	8.7e-99	71.60	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SZ66	8.7e-99	71.60	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7VDW0	8.7e-99	71.60	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CPU5	6.0e-92	72.27	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CT53	1.6e-84	63.14	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc02g0052201 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 83..221 e-value: 7.7E-15 score: 57.0
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 71..224

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0052201.1	Cmc02g0052201.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding