Cmc02g0050431 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0050431
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr02: 16674988 .. 16675434 (+)
RNA-Seq Expression	Cmc02g0050431
Synteny	Cmc02g0050431

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTGAAAACTGTGTTTCTCAATGGAAACATTGTTGAGACAATTTATATGGTACAATTAGAAAACTTTGTAACTAATAATTCAAAGTCTATGGGGTGTGCAAATTTGAAGAAATCCATCTATAGTCTCAAACAAGCCTCTCATCAATGGTATCAAAAATTTCATGAAGTAATTACCTCTTTTGGTTTTGAGGTGACTATAGTAGAAGATTGTGTATATCACAAGTCTAGTGGGAGTAAATCTATTTTCCTAGTGTTATATGTTGATGACATACTCATAGCAAGTAATGATGTAGGTTTATTGCATGACACTAAGAGGTTTCTCAAAAGGAATTTTGAGATGAAGGATCTTGGTGATGATTCTTTTGTATTAGGAATAGAAATACAGCGAGATTGCTCTGGTATTTTGAGATTATTACAAAAGAACTACATTAAAAAAATTTGA

mRNA sequence

ATGGATGTGAAAACTGTGTTTCTCAATGGAAACATTGTTGAGACAATTTATATGGTACAATTAGAAAACTTTGTAACTAATAATTCAAAGTCTATGGGGTGTGCAAATTTGAAGAAATCCATCTATAGTCTCAAACAAGCCTCTCATCAATGGTATCAAAAATTTCATGAAGTAATTACCTCTTTTGGTTTTGAGGTGACTATAGTAGAAGATTGTGTATATCACAAGTCTAGTGGGAGTAAATCTATTTTCCTAGTGTTATATGTTGATGACATACTCATAGCAAGTAATGATGTAGGTTTATTGCATGACACTAAGAGGTTTCTCAAAAGGAATTTTGAGATGAAGGATCTTGGTGATGATTCTTTTGTATTAGGAATAGAAATACAGCGAGATTGCTCTGGTATTTTGAGATTATTACAAAAGAACTACATTAAAAAAATTTGA

Coding sequence (CDS)

ATGGATGTGAAAACTGTGTTTCTCAATGGAAACATTGTTGAGACAATTTATATGGTACAATTAGAAAACTTTGTAACTAATAATTCAAAGTCTATGGGGTGTGCAAATTTGAAGAAATCCATCTATAGTCTCAAACAAGCCTCTCATCAATGGTATCAAAAATTTCATGAAGTAATTACCTCTTTTGGTTTTGAGGTGACTATAGTAGAAGATTGTGTATATCACAAGTCTAGTGGGAGTAAATCTATTTTCCTAGTGTTATATGTTGATGACATACTCATAGCAAGTAATGATGTAGGTTTATTGCATGACACTAAGAGGTTTCTCAAAAGGAATTTTGAGATGAAGGATCTTGGTGATGATTCTTTTGTATTAGGAATAGAAATACAGCGAGATTGCTCTGGTATTTTGAGATTATTACAAAAGAACTACATTAAAAAAATTTGA

Protein sequence

MDVKTVFLNGNIVETIYMVQLENFVTNNSKSMGCANLKKSIYSLKQASHQWYQKFHEVITSFGFEVTIVEDCVYHKSSGSKSIFLVLYVDDILIASNDVGLLHDTKRFLKRNFEMKDLGDDSFVLGIEIQRDCSGILRLLQKNYIKKI

Homology

[Close]

BLAST of Cmc02g0050431 vs. NCBI nr
Match: RDX67187.1 (hypothetical protein CR513_53967, partial [Mucuna pruriens])

HSP 1 Score: 219.2 bits (557), Expect = 2.4e-53
Identity = 112/149 (75.17%), Postives = 127/149 (85.23%), Query Frame = 0


Query: 1   MDVKTVFLNGNIVETIYMVQLENFVTNNSKSMGCANLKKSIYSLKQASHQWYQKFHEVIT 60
           MDVKT FLNG+I ETIYM+Q ENFV+N SKSM C  LKKSIY LKQAS QWY KFH+VIT
Sbjct: 1   MDVKTAFLNGDIDETIYMMQPENFVSNESKSMVC-KLKKSIYGLKQASRQWYHKFHQVIT 60

Query: 61  SFGFEVTIVEDCVYHKSSGSKSIFLVLYVDDILIASNDVGLLHDTKRFLKRNFEMKDLGD 120
           S+GFE  +V+DCVYHK SGSK IFLVLYVDDIL+AS+D GLLH+TKRFL +NFEMKDLG+
Sbjct: 61  SYGFEANVVDDCVYHKFSGSKYIFLVLYVDDILLASSDTGLLHETKRFLTKNFEMKDLGE 120

Query: 121 DSFVLGIEIQRDCS-GILRLLQKNYIKKI 149
            SFVLGI+I RD S GILRL Q+NYI K+
Sbjct: 121 ASFVLGIQILRDRSQGILRLSQENYISKV 148

[Close]

BLAST of Cmc02g0050431 vs. NCBI nr
Match: KYP49134.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 217.6 bits (553), Expect = 7.1e-53
Identity = 111/149 (74.50%), Postives = 128/149 (85.91%), Query Frame = 0


Query: 1   MDVKTVFLNGNIVETIYMVQLENFVTNNSKSMGCANLKKSIYSLKQASHQWYQKFHEVIT 60
           MDVKT FLNG+I ETIYM+Q ENFV+ +SKSM C  LKKSIY LKQAS QWY KFH+VIT
Sbjct: 120 MDVKTAFLNGDIEETIYMMQPENFVSGDSKSMVC-KLKKSIYGLKQASRQWYHKFHQVIT 179

Query: 61  SFGFEVTIVEDCVYHKSSGSKSIFLVLYVDDILIASNDVGLLHDTKRFLKRNFEMKDLGD 120
           S+GFE  IV+DCVYHK SGSK IFLVLYVDDIL+AS+D+GLLH+TKRFL +NFEMKDLG+
Sbjct: 180 SYGFEANIVDDCVYHKFSGSKYIFLVLYVDDILLASSDIGLLHETKRFLTKNFEMKDLGE 239

Query: 121 DSFVLGIEIQRDCS-GILRLLQKNYIKKI 149
            SFVLGI+I RD S GI+RL Q+NYI K+
Sbjct: 240 ASFVLGIKILRDRSHGIIRLSQENYIDKV 267

[Close]

BLAST of Cmc02g0050431 vs. NCBI nr
Match: KYP39716.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 217.6 bits (553), Expect = 7.1e-53
Identity = 111/149 (74.50%), Postives = 128/149 (85.91%), Query Frame = 0


Query: 1    MDVKTVFLNGNIVETIYMVQLENFVTNNSKSMGCANLKKSIYSLKQASHQWYQKFHEVIT 60
            MDVKT FLNG+I ETIYM+Q ENFV+ +SKSM C  LKKSIY LKQAS QWY KFH+VIT
Sbjct: 917  MDVKTAFLNGDIEETIYMMQPENFVSGDSKSMVC-KLKKSIYGLKQASRQWYHKFHQVIT 976

Query: 61   SFGFEVTIVEDCVYHKSSGSKSIFLVLYVDDILIASNDVGLLHDTKRFLKRNFEMKDLGD 120
            S+GFE  IV+DCVYHK SGSK IFLVLYVDDIL+AS+D+GLLH+TKRFL +NFEMKDLG+
Sbjct: 977  SYGFEANIVDDCVYHKFSGSKYIFLVLYVDDILLASSDIGLLHETKRFLTKNFEMKDLGE 1036

Query: 121  DSFVLGIEIQRDCS-GILRLLQKNYIKKI 149
             SFVLGI+I RD S GI+RL Q+NYI K+
Sbjct: 1037 ASFVLGIKILRDRSHGIIRLSQENYIDKV 1064

[Close]

BLAST of Cmc02g0050431 vs. NCBI nr
Match: RDY07827.1 (hypothetical protein CR513_08008, partial [Mucuna pruriens])

HSP 1 Score: 216.5 bits (550), Expect = 1.6e-52
Identity = 110/149 (73.83%), Postives = 127/149 (85.23%), Query Frame = 0


Query: 1   MDVKTVFLNGNIVETIYMVQLENFVTNNSKSMGCANLKKSIYSLKQASHQWYQKFHEVIT 60
           MDVKT FLNG+I ETIYM+Q ENFV+N SKS+ C  LKKSIY LKQ SHQWY KFH+VIT
Sbjct: 14  MDVKTAFLNGDIDETIYMMQPENFVSNESKSIVC-KLKKSIYGLKQTSHQWYHKFHQVIT 73

Query: 61  SFGFEVTIVEDCVYHKSSGSKSIFLVLYVDDILIASNDVGLLHDTKRFLKRNFEMKDLGD 120
            +GFEV +V+DCVYHK SGSK IFLVLYVDDIL+AS+D GLLH+TKRFL ++FEMKDLG+
Sbjct: 74  LYGFEVNVVDDCVYHKFSGSKYIFLVLYVDDILLASSDTGLLHETKRFLTKDFEMKDLGE 133

Query: 121 DSFVLGIEIQRDCS-GILRLLQKNYIKKI 149
            SFVLGI+I RD S GILRL Q+NYI K+
Sbjct: 134 ASFVLGIQILRDRSHGILRLSQENYISKV 161

[Close]

BLAST of Cmc02g0050431 vs. NCBI nr
Match: PNX73065.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Trifolium pratense])

HSP 1 Score: 214.5 bits (545), Expect = 6.0e-52
Identity = 110/149 (73.83%), Postives = 124/149 (83.22%), Query Frame = 0


Query: 1   MDVKTVFLNGNIVETIYMVQLENFVTNNSKSMGCANLKKSIYSLKQASHQWYQKFHEVIT 60
           MDVKT FLNGNI ETIYMVQ ENFV+ +SK+M C  L KSIY LKQAS QWY KFHEV+ 
Sbjct: 544 MDVKTAFLNGNIDETIYMVQPENFVSGDSKNMVC-KLTKSIYGLKQASRQWYHKFHEVVL 603

Query: 61  SFGFEVTIVEDCVYHKSSGSKSIFLVLYVDDILIASNDVGLLHDTKRFLKRNFEMKDLGD 120
           SFGFEV IVEDCVY K SG K IFLVLYVDDIL+A+ND+G+LH+TK+FL R FEMKDLGD
Sbjct: 604 SFGFEVNIVEDCVYQKFSGRKCIFLVLYVDDILLAANDIGILHETKKFLSRTFEMKDLGD 663

Query: 121 DSFVLGIEIQRDCS-GILRLLQKNYIKKI 149
            SFVLGI+I RD S GIL L Q+NYI+K+
Sbjct: 664 ASFVLGIQIHRDRSRGILGLSQRNYIEKV 691

[Close]

BLAST of Cmc02g0050431 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.2e-24
Identity = 67/150 (44.67%), Postives = 90/150 (60.00%), Query Frame = 0


Query: 1    MDVKTVFLNGNIVETIYMVQLENFVTNNSKSMGCANLKKSIYSLKQASHQWYQKFHEVIT 60
            +DVKT FL+G++ E IYM Q E F     K M C  L KS+Y LKQA  QWY KF   + 
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVC-KLNKSLYGLKQAPRQWYMKFDSFMK 980

Query: 61   SFGFEVTIVEDCVYHKS-SGSKSIFLVLYVDDILIASNDVGLLHDTKRFLKRNFEMKDLG 120
            S  +  T  + CVY K  S +  I L+LYVDD+LI   D GL+   K  L ++F+MKDLG
Sbjct: 981  SQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLG 1040

Query: 121  DDSFVLGIEIQRD-CSGILRLLQKNYIKKI 149
                +LG++I R+  S  L L Q+ YI+++
Sbjct: 1041 PAQQILGMKIVRERTSRKLWLSQEKYIERV 1069

[Close]

BLAST of Cmc02g0050431 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-19
Identity = 57/150 (38.00%), Postives = 91/150 (60.67%), Query Frame = 0


Query: 1    MDVKTVFLNGNIVETIYMVQLENFVTNNSKSMGCANLKKSIYSLKQASHQWYQKFHEVIT 60
            MDVKT FLNG + E IYM +L   ++ NS ++    L K+IY LKQA+  W++ F + + 
Sbjct: 1001 MDVKTAFLNGTLKEEIYM-RLPQGISCNSDNV--CKLNKAIYGLKQAARCWFEVFEQALK 1060

Query: 61   SFGFEVTIVEDCVY--HKSSGSKSIFLVLYVDDILIASNDVGLLHDTKRFLKRNFEMKDL 120
               F  + V+ C+Y   K + +++I+++LYVDD++IA+ D+  +++ KR+L   F M DL
Sbjct: 1061 ECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDL 1120

Query: 121  GDDSFVLGIEIQRDCSGILRLLQKNYIKKI 149
             +    +GI I+     I  L Q  Y+KKI
Sbjct: 1121 NEIKHFIGIRIEMQEDKIY-LSQSAYVKKI 1146

[Close]

BLAST of Cmc02g0050431 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.0e-18
Identity = 50/145 (34.48%), Postives = 81/145 (55.86%), Query Frame = 0


Query: 1    MDVKTVFLNGNIVETIYMVQLENFVTNNSKSMGCANLKKSIYSLKQASHQWYQKFHEVIT 60
            +DV   FL G + + +YM Q   F+  +  +  C  L+K++Y LKQA   WY +    + 
Sbjct: 1064 LDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVC-KLRKALYGLKQAPRAWYVELRNYLL 1123

Query: 61   SFGFEVTIVEDCVYHKSSGSKSIFLVLYVDDILIASNDVGLLHDTKRFLKRNFEMKDLGD 120
            + GF  ++ +  ++    G   +++++YVDDILI  ND  LLH+T   L + F +KD  +
Sbjct: 1124 TIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEE 1183

Query: 121  DSFVLGIEIQRDCSGILRLLQKNYI 146
              + LGIE +R  +G L L Q+ YI
Sbjct: 1184 LHYFLGIEAKRVPTG-LHLSQRRYI 1206

[Close]

BLAST of Cmc02g0050431 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.0e-17
Identity = 52/144 (36.11%), Postives = 76/144 (52.78%), Query Frame = 0


Query: 1    MDVKTVFLNGNIVETIYMVQLENFVTNNSKSMGCANLKKSIYSLKQASHQWYQKFHEVIT 60
            +DV   FL G + + +YM Q   FV  +     C  L+K+IY LKQA   WY +    + 
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVC-RLRKAIYGLKQAPRAWYVELRTYLL 1106

Query: 61   SFGFEVTIVEDCVYHKSSGSKSIFLVLYVDDILIASNDVGLLHDTKRFLKRNFEMKDLGD 120
            + GF  +I +  ++    G   I++++YVDDILI  ND  LL  T   L + F +K+  D
Sbjct: 1107 TVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHED 1166

Query: 121  DSFVLGIEIQRDCSGILRLLQKNY 145
              + LGIE +R   G L L Q+ Y
Sbjct: 1167 LHYFLGIEAKRVPQG-LHLSQRRY 1188

[Close]

BLAST of Cmc02g0050431 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 9.7e-13
Identity = 47/147 (31.97%), Postives = 73/147 (49.66%), Query Frame = 0


Query: 1   MDVKTVFLNGNIVETIYMVQLENFVTNNSKSMGCANLKKSIYSLKQASHQWYQKFHEVIT 60
           MDV T FLN  + E IY+ Q   FV   +       L   +Y LKQA   W +  +  + 
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDY-VWELYGGMYGLKQAPLLWNEHINNTLK 60

Query: 61  SFGFEVTIVEDCVYHKSSGSKSIFLVLYVDDILIASNDVGLLHDTKRFLKRNFEMKDLGD 120
             GF     E  +Y +S+    I++ +YVDD+L+A+    +    K+ L + + MKDLG 
Sbjct: 61  KIGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGK 120

Query: 121 DSFVLGIEIQRDCSGILRLLQKNYIKK 148
               LG+ I +  +G + L  ++YI K
Sbjct: 121 VDKFLGLNIHQSSNGDITLSLQDYIAK 146

[Close]

BLAST of Cmc02g0050431 vs. ExPASy TrEMBL
Match: A0A371EMA5 (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_53967 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.2e-53
Identity = 112/149 (75.17%), Postives = 127/149 (85.23%), Query Frame = 0


Query: 1   MDVKTVFLNGNIVETIYMVQLENFVTNNSKSMGCANLKKSIYSLKQASHQWYQKFHEVIT 60
           MDVKT FLNG+I ETIYM+Q ENFV+N SKSM C  LKKSIY LKQAS QWY KFH+VIT
Sbjct: 1   MDVKTAFLNGDIDETIYMMQPENFVSNESKSMVC-KLKKSIYGLKQASRQWYHKFHQVIT 60

Query: 61  SFGFEVTIVEDCVYHKSSGSKSIFLVLYVDDILIASNDVGLLHDTKRFLKRNFEMKDLGD 120
           S+GFE  +V+DCVYHK SGSK IFLVLYVDDIL+AS+D GLLH+TKRFL +NFEMKDLG+
Sbjct: 61  SYGFEANVVDDCVYHKFSGSKYIFLVLYVDDILLASSDTGLLHETKRFLTKNFEMKDLGE 120

Query: 121 DSFVLGIEIQRDCS-GILRLLQKNYIKKI 149
            SFVLGI+I RD S GILRL Q+NYI K+
Sbjct: 121 ASFVLGIQILRDRSQGILRLSQENYISKV 148

[Close]

BLAST of Cmc02g0050431 vs. ExPASy TrEMBL
Match: A0A151RB35 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_038971 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.4e-53
Identity = 111/149 (74.50%), Postives = 128/149 (85.91%), Query Frame = 0


Query: 1    MDVKTVFLNGNIVETIYMVQLENFVTNNSKSMGCANLKKSIYSLKQASHQWYQKFHEVIT 60
            MDVKT FLNG+I ETIYM+Q ENFV+ +SKSM C  LKKSIY LKQAS QWY KFH+VIT
Sbjct: 917  MDVKTAFLNGDIEETIYMMQPENFVSGDSKSMVC-KLKKSIYGLKQASRQWYHKFHQVIT 976

Query: 61   SFGFEVTIVEDCVYHKSSGSKSIFLVLYVDDILIASNDVGLLHDTKRFLKRNFEMKDLGD 120
            S+GFE  IV+DCVYHK SGSK IFLVLYVDDIL+AS+D+GLLH+TKRFL +NFEMKDLG+
Sbjct: 977  SYGFEANIVDDCVYHKFSGSKYIFLVLYVDDILLASSDIGLLHETKRFLTKNFEMKDLGE 1036

Query: 121  DSFVLGIEIQRDCS-GILRLLQKNYIKKI 149
             SFVLGI+I RD S GI+RL Q+NYI K+
Sbjct: 1037 ASFVLGIKILRDRSHGIIRLSQENYIDKV 1064

[Close]

BLAST of Cmc02g0050431 vs. ExPASy TrEMBL
Match: A0A151S300 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_029166 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.4e-53
Identity = 111/149 (74.50%), Postives = 128/149 (85.91%), Query Frame = 0


Query: 1   MDVKTVFLNGNIVETIYMVQLENFVTNNSKSMGCANLKKSIYSLKQASHQWYQKFHEVIT 60
           MDVKT FLNG+I ETIYM+Q ENFV+ +SKSM C  LKKSIY LKQAS QWY KFH+VIT
Sbjct: 120 MDVKTAFLNGDIEETIYMMQPENFVSGDSKSMVC-KLKKSIYGLKQASRQWYHKFHQVIT 179

Query: 61  SFGFEVTIVEDCVYHKSSGSKSIFLVLYVDDILIASNDVGLLHDTKRFLKRNFEMKDLGD 120
           S+GFE  IV+DCVYHK SGSK IFLVLYVDDIL+AS+D+GLLH+TKRFL +NFEMKDLG+
Sbjct: 180 SYGFEANIVDDCVYHKFSGSKYIFLVLYVDDILLASSDIGLLHETKRFLTKNFEMKDLGE 239

Query: 121 DSFVLGIEIQRDCS-GILRLLQKNYIKKI 149
            SFVLGI+I RD S GI+RL Q+NYI K+
Sbjct: 240 ASFVLGIKILRDRSHGIIRLSQENYIDKV 267

[Close]

BLAST of Cmc02g0050431 vs. ExPASy TrEMBL
Match: A0A371HYD6 (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_08008 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 7.6e-53
Identity = 110/149 (73.83%), Postives = 127/149 (85.23%), Query Frame = 0


Query: 1   MDVKTVFLNGNIVETIYMVQLENFVTNNSKSMGCANLKKSIYSLKQASHQWYQKFHEVIT 60
           MDVKT FLNG+I ETIYM+Q ENFV+N SKS+ C  LKKSIY LKQ SHQWY KFH+VIT
Sbjct: 14  MDVKTAFLNGDIDETIYMMQPENFVSNESKSIVC-KLKKSIYGLKQTSHQWYHKFHQVIT 73

Query: 61  SFGFEVTIVEDCVYHKSSGSKSIFLVLYVDDILIASNDVGLLHDTKRFLKRNFEMKDLGD 120
            +GFEV +V+DCVYHK SGSK IFLVLYVDDIL+AS+D GLLH+TKRFL ++FEMKDLG+
Sbjct: 74  LYGFEVNVVDDCVYHKFSGSKYIFLVLYVDDILLASSDTGLLHETKRFLTKDFEMKDLGE 133

Query: 121 DSFVLGIEIQRDCS-GILRLLQKNYIKKI 149
            SFVLGI+I RD S GILRL Q+NYI K+
Sbjct: 134 ASFVLGIQILRDRSHGILRLSQENYISKV 161

[Close]

BLAST of Cmc02g0050431 vs. ExPASy TrEMBL
Match: A0A2K3L3F6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g028963 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.9e-52
Identity = 110/149 (73.83%), Postives = 124/149 (83.22%), Query Frame = 0


Query: 1   MDVKTVFLNGNIVETIYMVQLENFVTNNSKSMGCANLKKSIYSLKQASHQWYQKFHEVIT 60
           MDVKT FLNGNI ETIYMVQ ENFV+ +SK+M C  L KSIY LKQAS QWY KFHEV+ 
Sbjct: 544 MDVKTAFLNGNIDETIYMVQPENFVSGDSKNMVC-KLTKSIYGLKQASRQWYHKFHEVVL 603

Query: 61  SFGFEVTIVEDCVYHKSSGSKSIFLVLYVDDILIASNDVGLLHDTKRFLKRNFEMKDLGD 120
           SFGFEV IVEDCVY K SG K IFLVLYVDDIL+A+ND+G+LH+TK+FL R FEMKDLGD
Sbjct: 604 SFGFEVNIVEDCVYQKFSGRKCIFLVLYVDDILLAANDIGILHETKKFLSRTFEMKDLGD 663

Query: 121 DSFVLGIEIQRDCS-GILRLLQKNYIKKI 149
            SFVLGI+I RD S GIL L Q+NYI+K+
Sbjct: 664 ASFVLGIQIHRDRSRGILGLSQRNYIEKV 691

[Close]

BLAST of Cmc02g0050431 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 94.7 bits (234), Expect = 6.5e-20
Identity = 53/147 (36.05%), Postives = 82/147 (55.78%), Query Frame = 0


Query: 1   MDVKTVFLNGNIVETIYMVQLENFVTNNSKSM---GCANLKKSIYSLKQASHQWYQKFHE 60
           +D+   FLNG++ E IYM     +      S+       LKKSIY LKQAS QW+ KF  
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  VITSFGFEVTIVEDCVYHKSSGSKSIFLVLYVDDILIASNDVGLLHDTKRFLKRNFEMKD 120
            +  FGF  +  +   + K + +  + +++YVDDI+I SN+   + + K  LK  F+++D
Sbjct: 253 TLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRD 312

Query: 121 LGDDSFVLGIEIQRDCSGILRLLQKNY 145
           LG   + LG+EI R  +GI  + Q+ Y
Sbjct: 313 LGPLKYFLGLEIARSAAGI-NICQRKY 338

[Close]

BLAST of Cmc02g0050431 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 5.9e-05
Identity = 27/66 (40.91%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 83  IFLVLYVDDILIASNDVGLLHDTKRFLKRNFEMKDLGDDSFVLGIEIQRDCSGILRLLQK 142
           ++L+LYVDDIL+  +   LL+     L   F MKDLG   + LGI+I+   SG+  L Q 
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLF-LSQT 60

Query: 143 NYIKKI 149
            Y ++I
Sbjct: 61  KYAEQI 65

The following BLAST results are available for this feature:

BLAST of Cmc02g0050431 vs. NCBI nr


Match Name	E-value	Identity	Description
RDX67187.1	2.4e-53	75.17	hypothetical protein CR513_53967, partial [Mucuna pruriens]	[more]
KYP49134.1	7.1e-53	74.50	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
KYP39716.1	7.1e-53	74.50	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
RDY07827.1	1.6e-52	73.83	hypothetical protein CR513_08008, partial [Mucuna pruriens]	[more]
PNX73065.1	6.0e-52	73.83	retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Trifolium ...	[more]

BLAST of Cmc02g0050431 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	7.2e-24	44.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.8e-19	38.00	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	2.0e-18	34.48	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	5.0e-17	36.11	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P25600	9.7e-13	31.97	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc02g0050431 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A371EMA5	1.2e-53	75.17	Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Muc...	[more]
A0A151RB35	3.4e-53	74.50	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]
A0A151S300	3.4e-53	74.50	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]
A0A371HYD6	7.6e-53	73.83	Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Muc...	[more]
A0A2K3L3F6	2.9e-52	73.83	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Trifol...	[more]

BLAST of Cmc02g0050431 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	6.5e-20	36.05	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	5.9e-05	40.91	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..148 e-value: 3.8E-38 score: 131.5
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 1..148
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 24..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0050431.1	Cmc02g0050431.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding