Cmc02g0050401 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0050401
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr02: 16632068 .. 16632643 (-)
RNA-Seq Expression	Cmc02g0050401
Synteny	Cmc02g0050401

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGTAAACGACATGTTAATCTTTGGATCAAACTTGCACATCATAAATGATGTAAAATCTATGTTGAGCGCAAACTTTGACATGAAAGACCTAGGTGAAGCTGATGTAATCTTAGGCATCAAAATTGCAAGAACTGAAAATGGAATTTCTTTAGATCAATCTCATTACATAGAAAAGATTCTAAAGAAGTACAACTACTTCGAAAGTAAACCAACTTGTACACCTTATGACTCTAGTGTGAAATTATTCAAGAACACTAGTGACAGTGTTAACCAATCCGAGTATGCTAGTATCATAGGTAGTTTGAGGTATGCTGCTGATTGCACTAGACCAGACATAGCTTACACCATAGGATTACTGTGTAGGTTTACCAGCAGACTCAGTCTAGAACATTGGAATGTAATAGAGAGAGTAATGAGATACCTTAAGAAAACCCAAAACCTAGGATTACATTATAACAAGTTTTCCACTGTACTTGAAGGTTACATCGATGCTGATTGGAACTCCCTCTCAGATGACTCAAAGGCTATAAGTGGCTATATTTTTAAAATAACAGAAGGAGCTGTGGCTTGA

mRNA sequence

ATGTACGTAAACGACATGTTAATCTTTGGATCAAACTTGCACATCATAAATGATGTAAAATCTATGTTGAGCGCAAACTTTGACATGAAAGACCTAGGTGAAGCTGATGTAATCTTAGGCATCAAAATTGCAAGAACTGAAAATGGAATTTCTTTAGATCAATCTCATTACATAGAAAAGATTCTAAAGAAGTACAACTACTTCGAAAGTAAACCAACTTGTACACCTTATGACTCTAGTGTGAAATTATTCAAGAACACTAGTGACAGTGTTAACCAATCCGAGTATGCTAGTATCATAGGTAGTTTGAGGTATGCTGCTGATTGCACTAGACCAGACATAGCTTACACCATAGGATTACTGTGTAGGTTTACCAGCAGACTCAGTCTAGAACATTGGAATGTAATAGAGAGAGTAATGAGATACCTTAAGAAAACCCAAAACCTAGGATTACATTATAACAAGTTTTCCACTGTACTTGAAGGTTACATCGATGCTGATTGGAACTCCCTCTCAGATGACTCAAAGGCTATAAGTGGCTATATTTTTAAAATAACAGAAGGAGCTGTGGCTTGA

Coding sequence (CDS)

ATGTACGTAAACGACATGTTAATCTTTGGATCAAACTTGCACATCATAAATGATGTAAAATCTATGTTGAGCGCAAACTTTGACATGAAAGACCTAGGTGAAGCTGATGTAATCTTAGGCATCAAAATTGCAAGAACTGAAAATGGAATTTCTTTAGATCAATCTCATTACATAGAAAAGATTCTAAAGAAGTACAACTACTTCGAAAGTAAACCAACTTGTACACCTTATGACTCTAGTGTGAAATTATTCAAGAACACTAGTGACAGTGTTAACCAATCCGAGTATGCTAGTATCATAGGTAGTTTGAGGTATGCTGCTGATTGCACTAGACCAGACATAGCTTACACCATAGGATTACTGTGTAGGTTTACCAGCAGACTCAGTCTAGAACATTGGAATGTAATAGAGAGAGTAATGAGATACCTTAAGAAAACCCAAAACCTAGGATTACATTATAACAAGTTTTCCACTGTACTTGAAGGTTACATCGATGCTGATTGGAACTCCCTCTCAGATGACTCAAAGGCTATAAGTGGCTATATTTTTAAAATAACAGAAGGAGCTGTGGCTTGA

Protein sequence

MYVNDMLIFGSNLHIINDVKSMLSANFDMKDLGEADVILGIKIARTENGISLDQSHYIEKILKKYNYFESKPTCTPYDSSVKLFKNTSDSVNQSEYASIIGSLRYAADCTRPDIAYTIGLLCRFTSRLSLEHWNVIERVMRYLKKTQNLGLHYNKFSTVLEGYIDADWNSLSDDSKAISGYIFKITEGAVA

Homology

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BLAST of Cmc02g0050401 vs. NCBI nr
Match: TYK00058.1 (hypothetical protein E5676_scaffold596G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 372.5 bits (955), Expect = 2.2e-99
Identity = 185/191 (96.86%), Postives = 187/191 (97.91%), Query Frame = 0


Query: 1   MYVNDMLIFGSNLHIINDVKSMLSANFDMKDLGEADVILGIKIARTENGISLDQSHYIEK 60
           +YV+DMLIFGSNLHIINDVKSMLSANFDMKDLGEADVILGIKIARTENGISLDQSHYIEK
Sbjct: 86  LYVDDMLIFGSNLHIINDVKSMLSANFDMKDLGEADVILGIKIARTENGISLDQSHYIEK 145

Query: 61  ILKKYNYFESKPTCTPYDSSVKLFKNTSDSVNQSEYASIIGSLRYAADCTRPDIAYTIGL 120
           ILKKYNYFESKP CTPYDSSVKLFKNT DSVNQSEYASIIGSLRYAADCTRPDIAYTIGL
Sbjct: 146 ILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIAYTIGL 205

Query: 121 LCRFTSRLSLEHWNVIERVMRYLKKTQNLGLHYNKFSTVLEGYIDADWNSLSDDSKAISG 180
           LCRFTSRLSLEHWN IERVMRYLKKTQNLGLHYNKFSTVLEGYIDADWNSLSDDSKAISG
Sbjct: 206 LCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFSTVLEGYIDADWNSLSDDSKAISG 265

Query: 181 YIFKITEGAVA 192
           YIFKITE AVA
Sbjct: 266 YIFKITEEAVA 276

[Close]

BLAST of Cmc02g0050401 vs. NCBI nr
Match: TYK06419.1 (hypothetical protein E5676_scaffold163G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 340.1 bits (871), Expect = 1.2e-89
Identity = 165/191 (86.39%), Postives = 178/191 (93.19%), Query Frame = 0


Query: 1   MYVNDMLIFGSNLHIINDVKSMLSANFDMKDLGEADVILGIKIARTENGISLDQSHYIEK 60
           +YV+D+LIFGSNL++INDVKSMLS NFDMK+L EADVILGIKI RT+NGISLDQSHYIEK
Sbjct: 133 LYVDDILIFGSNLYVINDVKSMLSENFDMKELDEADVILGIKITRTKNGISLDQSHYIEK 192

Query: 61  ILKKYNYFESKPTCTPYDSSVKLFKNTSDSVNQSEYASIIGSLRYAADCTRPDIAYTIGL 120
           ILKKYNYF+SKPTCTPYDSSVKLF+NT DSVNQSEYASIIGSLRYAADCTRPDIAY +GL
Sbjct: 193 ILKKYNYFDSKPTCTPYDSSVKLFENTGDSVNQSEYASIIGSLRYAADCTRPDIAYAVGL 252

Query: 121 LCRFTSRLSLEHWNVIERVMRYLKKTQNLGLHYNKFSTVLEGYIDADWNSLSDDSKAISG 180
           LCRFTSR SLEHWN IER++RYLKKTQNLGLHYNKF  VLEGYIDADWNSLSD+SKA SG
Sbjct: 253 LCRFTSRPSLEHWNTIERIIRYLKKTQNLGLHYNKFPAVLEGYIDADWNSLSDNSKATSG 312

Query: 181 YIFKITEGAVA 192
           YIF I  GAVA
Sbjct: 313 YIFNIAGGAVA 323

[Close]

BLAST of Cmc02g0050401 vs. NCBI nr
Match: KAA0032842.1 (hypothetical protein E6C27_scaffold1987G00140 [Cucumis melo var. makuwa] >TYK21198.1 hypothetical protein E5676_scaffold359G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 337.8 bits (865), Expect = 6.1e-89
Identity = 166/191 (86.91%), Postives = 172/191 (90.05%), Query Frame = 0


Query: 1   MYVNDMLIFGSNLHIINDVKSMLSANFDMKDLGEADVILGIKIARTENGISLDQSHYIEK 60
           +YV+DMLIFGSNLH+INDVKSML+ NFDMKDLGEADVILGIKI R ENGISLDQSHYIEK
Sbjct: 86  LYVDDMLIFGSNLHVINDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEK 145

Query: 61  ILKKYNYFESKPTCTPYDSSVKLFKNTSDSVNQSEYASIIGSLRYAADCTRPDIAYTIGL 120
           ILKKYNYF+SKP CTPYDSSVKLFKNT DSVNQSEYASIIGSLRYAADCTRPDIAY +GL
Sbjct: 146 ILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIAYAVGL 205

Query: 121 LCRFTSRLSLEHWNVIERVMRYLKKTQNLGLHYNKFSTVLEGYIDADWNSLSDDSKAISG 180
           LCRFTSR SLEHWN IERVMRYLKK QNLGLHYNKF  VLEGY DADWNS SDDSKA SG
Sbjct: 206 LCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSG 265

Query: 181 YIFKITEGAVA 192
           YIF I    VA
Sbjct: 266 YIFNIAGEVVA 276

[Close]

BLAST of Cmc02g0050401 vs. NCBI nr
Match: KAA0060459.1 (hypothetical protein E6C27_scaffold22G002870 [Cucumis melo var. makuwa] >TYK18544.1 hypothetical protein E5676_scaffold119G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 337.4 bits (864), Expect = 7.9e-89
Identity = 166/191 (86.91%), Postives = 172/191 (90.05%), Query Frame = 0


Query: 1   MYVNDMLIFGSNLHIINDVKSMLSANFDMKDLGEADVILGIKIARTENGISLDQSHYIEK 60
           +YV+DMLIFGSNLH+INDVKSMLS NFDMKDLGEADVILGIKI RTENGI LDQSHYIEK
Sbjct: 86  LYVDDMLIFGSNLHVINDVKSMLSVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEK 145

Query: 61  ILKKYNYFESKPTCTPYDSSVKLFKNTSDSVNQSEYASIIGSLRYAADCTRPDIAYTIGL 120
            LKKYNYF+SKPTCTPYDSSVKLFKNT DSVNQ+EYASIIGSLRYA D TRP IAY +GL
Sbjct: 146 TLKKYNYFDSKPTCTPYDSSVKLFKNTGDSVNQTEYASIIGSLRYAVDYTRPSIAYAVGL 205

Query: 121 LCRFTSRLSLEHWNVIERVMRYLKKTQNLGLHYNKFSTVLEGYIDADWNSLSDDSKAISG 180
           LCRFTSR SLEHWN IERVMRYLKKTQNLGLHYNKF  VLEGY DADWNSL DDSKA SG
Sbjct: 206 LCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSDADWNSLLDDSKATSG 265

Query: 181 YIFKITEGAVA 192
           YIF I  GAVA
Sbjct: 266 YIFNIAGGAVA 276

[Close]

BLAST of Cmc02g0050401 vs. NCBI nr
Match: KAA0058878.1 (putative polyprotein [Cucumis melo var. makuwa] >TYK23745.1 putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 335.1 bits (858), Expect = 3.9e-88
Identity = 162/191 (84.82%), Postives = 172/191 (90.05%), Query Frame = 0


Query: 1   MYVNDMLIFGSNLHIINDVKSMLSANFDMKDLGEADVILGIKIARTENGISLDQSHYIEK 60
           +YV+DML F SNLH+INDVKSMLS NFDMKDLGEAD+ILGIKI RT+NGISLDQS+YIEK
Sbjct: 202 LYVDDMLSFVSNLHVINDVKSMLSVNFDMKDLGEADIILGIKITRTKNGISLDQSYYIEK 261

Query: 61  ILKKYNYFESKPTCTPYDSSVKLFKNTSDSVNQSEYASIIGSLRYAADCTRPDIAYTIGL 120
           ILKKYNYF+SKP CTPYDSSVKLFKNT D+VNQSEY SIIGSLRY ADCTRPDIAY +GL
Sbjct: 262 ILKKYNYFDSKPACTPYDSSVKLFKNTGDNVNQSEYTSIIGSLRYVADCTRPDIAYAVGL 321

Query: 121 LCRFTSRLSLEHWNVIERVMRYLKKTQNLGLHYNKFSTVLEGYIDADWNSLSDDSKAISG 180
           LCRFTSR  LEHWN IER+MRYLKKTQNLGLHYNKFSTVLEGY D DWNSLSDDSKA SG
Sbjct: 322 LCRFTSRPCLEHWNAIERIMRYLKKTQNLGLHYNKFSTVLEGYNDVDWNSLSDDSKATSG 381

Query: 181 YIFKITEGAVA 192
           YIF I  G VA
Sbjct: 382 YIFNIAGGVVA 392

[Close]

BLAST of Cmc02g0050401 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.9e-33
Identity = 78/200 (39.00%), Postives = 117/200 (58.50%), Query Frame = 0


Query: 1    MYVNDMLIFGSNLHIINDVKSMLSANFDMKDLGEADVILGIKIA--RTENGISLDQSHYI 60
            +YV+DMLI G +  +I  +K  LS +FDMKDLG A  ILG+KI   RT   + L Q  YI
Sbjct: 1007 LYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYI 1066

Query: 61   EKILKKYNYFESKPTCTPYDSSVKLFKNTSDSVNQSE-------YASIIGSLRYAADCTR 120
            E++L+++N   +KP  TP    +KL K    +  + +       Y+S +GSL YA  CTR
Sbjct: 1067 ERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTR 1126

Query: 121  PDIAYTIGLLCRFTSRLSLEHWNVIERVMRYLKKTQNLGLHYNKFSTVLEGYIDADWNSL 180
            PDIA+ +G++ RF      EHW  ++ ++RYL+ T    L +     +L+GY DAD    
Sbjct: 1127 PDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADMAGD 1186

Query: 181  SDDSKAISGYIFKITEGAVA 192
             D+ K+ +GY+F  + GA++
Sbjct: 1187 IDNRKSSTGYLFTFSGGAIS 1206

[Close]

BLAST of Cmc02g0050401 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-26
Identity = 67/188 (35.64%), Postives = 104/188 (55.32%), Query Frame = 0


Query: 1    MYVNDMLIFGSNLHIINDVKSMLSANFDMKDLGEADVILGIKIARTENGISLDQSHYIEK 60
            +YV+D++I   ++  +N+ K  L   F M DL E    +GI+I   E+ I L QS Y++K
Sbjct: 1086 LYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKK 1145

Query: 61   ILKKYNYFESKPTCTPYDSSVKLFKNTSDSVNQSEYASIIGSLRYAADCTRPDIAYTIGL 120
            IL K+N        TP  S +      SD    +   S+IG L Y   CTRPD+   + +
Sbjct: 1146 ILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNI 1205

Query: 121  LCRFTSRLSLEHWNVIERVMRYLKKTQNLGLHYNK---FSTVLEGYIDADWNSLSDDSKA 180
            L R++S+ + E W  ++RV+RYLK T ++ L + K   F   + GY+D+DW     D K+
Sbjct: 1206 LSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKS 1265

Query: 181  ISGYIFKI 186
             +GY+FK+
Sbjct: 1266 TTGYLFKM 1273

[Close]

BLAST of Cmc02g0050401 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.2e-24
Identity = 68/184 (36.96%), Postives = 102/184 (55.43%), Query Frame = 0


Query: 1    MYVNDMLIFGSNLHIINDVKSMLSANFDMKDLGEADVILGIKIARTENGISLDQSHYIEK 60
            +YV+D+LI G++  ++++    LS  F +KD  E    LGI+  R   G+ L Q  YI  
Sbjct: 1149 VYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILD 1208

Query: 61   ILKKYNYFESKPTCTPYDSSVKL-FKNTSDSVNQSEYASIIGSLRYAADCTRPDIAYTIG 120
            +L + N   +KP  TP   S KL   + +   + +EY  I+GSL+Y A  TRPDI+Y + 
Sbjct: 1209 LLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLA-FTRPDISYAVN 1268

Query: 121  LLCRFTSRLSLEHWNVIERVMRYLKKTQNLGLHYNKFSTV-LEGYIDADWNSLSDDSKAI 180
             L +F    + EH   ++R++RYL  T N G+   K +T+ L  Y DADW    DD  + 
Sbjct: 1269 RLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVST 1328

Query: 181  SGYI 183
            +GYI
Sbjct: 1329 NGYI 1331

[Close]

BLAST of Cmc02g0050401 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.2e-24
Identity = 64/184 (34.78%), Postives = 104/184 (56.52%), Query Frame = 0


Query: 1    MYVNDMLIFGSNLHIINDVKSMLSANFDMKDLGEADVILGIKIARTENGISLDQSHYIEK 60
            +YV+D+LI G++  ++      LS  F +K+  +    LGI+  R   G+ L Q  Y   
Sbjct: 1132 VYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLD 1191

Query: 61   ILKKYNYFESKPTCTPYDSSVKLFKNTSDSV-NQSEYASIIGSLRYAADCTRPDIAYTIG 120
            +L + N   +KP  TP  +S KL  ++   + + +EY  I+GSL+Y A  TRPD++Y + 
Sbjct: 1192 LLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLA-FTRPDLSYAVN 1251

Query: 121  LLCRFTSRLSLEHWNVIERVMRYLKKTQNLGLHYNKFSTV-LEGYIDADWNSLSDDSKAI 180
             L ++    + +HWN ++RV+RYL  T + G+   K +T+ L  Y DADW   +DD  + 
Sbjct: 1252 RLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVST 1311

Query: 181  SGYI 183
            +GYI
Sbjct: 1312 NGYI 1314

[Close]

BLAST of Cmc02g0050401 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.6e-23
Identity = 59/182 (32.42%), Postives = 108/182 (59.34%), Query Frame = 0


Query: 1   MYVNDMLIFGSNLHIINDVKSMLSANFDMKDLGEADVILGIKIARTENGISLDQSHYIEK 60
           +YV+D+L+ GS+  ++N +   LS+ F MKDLG     LGI+I    +G+ L Q+ Y E+
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 61  ILKKYNYFESKPTCTPYDSSVKLFKNTSDSVNQSEYASIIGSLRYAADCTRPDIAYTIGL 120
           IL      + KP  TP    +    +T+   + S++ SI+G+L+Y    TRPDI+Y + +
Sbjct: 65  ILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLT-LTRPDISYAVNI 124

Query: 121 LCRFTSRLSLEHWNVIERVMRYLKKTQNLGLHYNKFSTV-LEGYIDADWNSLSDDSKAIS 180
           +C+     +L  +++++RV+RY+K T   GL+ +K S + ++ + D+DW   +   ++ +
Sbjct: 125 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTT 184

Query: 181 GY 182
           G+
Sbjct: 185 GF 185

[Close]

BLAST of Cmc02g0050401 vs. ExPASy TrEMBL
Match: A0A5D3BLQ7 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00040 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 1.1e-99
Identity = 185/191 (96.86%), Postives = 187/191 (97.91%), Query Frame = 0


Query: 1   MYVNDMLIFGSNLHIINDVKSMLSANFDMKDLGEADVILGIKIARTENGISLDQSHYIEK 60
           +YV+DMLIFGSNLHIINDVKSMLSANFDMKDLGEADVILGIKIARTENGISLDQSHYIEK
Sbjct: 86  LYVDDMLIFGSNLHIINDVKSMLSANFDMKDLGEADVILGIKIARTENGISLDQSHYIEK 145

Query: 61  ILKKYNYFESKPTCTPYDSSVKLFKNTSDSVNQSEYASIIGSLRYAADCTRPDIAYTIGL 120
           ILKKYNYFESKP CTPYDSSVKLFKNT DSVNQSEYASIIGSLRYAADCTRPDIAYTIGL
Sbjct: 146 ILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIAYTIGL 205

Query: 121 LCRFTSRLSLEHWNVIERVMRYLKKTQNLGLHYNKFSTVLEGYIDADWNSLSDDSKAISG 180
           LCRFTSRLSLEHWN IERVMRYLKKTQNLGLHYNKFSTVLEGYIDADWNSLSDDSKAISG
Sbjct: 206 LCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHYNKFSTVLEGYIDADWNSLSDDSKAISG 265

Query: 181 YIFKITEGAVA 192
           YIFKITE AVA
Sbjct: 266 YIFKITEEAVA 276

[Close]

BLAST of Cmc02g0050401 vs. ExPASy TrEMBL
Match: A0A5D3C7T6 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001210 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 5.9e-90
Identity = 165/191 (86.39%), Postives = 178/191 (93.19%), Query Frame = 0


Query: 1   MYVNDMLIFGSNLHIINDVKSMLSANFDMKDLGEADVILGIKIARTENGISLDQSHYIEK 60
           +YV+D+LIFGSNL++INDVKSMLS NFDMK+L EADVILGIKI RT+NGISLDQSHYIEK
Sbjct: 133 LYVDDILIFGSNLYVINDVKSMLSENFDMKELDEADVILGIKITRTKNGISLDQSHYIEK 192

Query: 61  ILKKYNYFESKPTCTPYDSSVKLFKNTSDSVNQSEYASIIGSLRYAADCTRPDIAYTIGL 120
           ILKKYNYF+SKPTCTPYDSSVKLF+NT DSVNQSEYASIIGSLRYAADCTRPDIAY +GL
Sbjct: 193 ILKKYNYFDSKPTCTPYDSSVKLFENTGDSVNQSEYASIIGSLRYAADCTRPDIAYAVGL 252

Query: 121 LCRFTSRLSLEHWNVIERVMRYLKKTQNLGLHYNKFSTVLEGYIDADWNSLSDDSKAISG 180
           LCRFTSR SLEHWN IER++RYLKKTQNLGLHYNKF  VLEGYIDADWNSLSD+SKA SG
Sbjct: 253 LCRFTSRPSLEHWNTIERIIRYLKKTQNLGLHYNKFPAVLEGYIDADWNSLSDNSKATSG 312

Query: 181 YIFKITEGAVA 192
           YIF I  GAVA
Sbjct: 313 YIFNIAGGAVA 323

[Close]

BLAST of Cmc02g0050401 vs. ExPASy TrEMBL
Match: A0A5A7SNZ1 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G00010 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 2.9e-89
Identity = 166/191 (86.91%), Postives = 172/191 (90.05%), Query Frame = 0


Query: 1   MYVNDMLIFGSNLHIINDVKSMLSANFDMKDLGEADVILGIKIARTENGISLDQSHYIEK 60
           +YV+DMLIFGSNLH+INDVKSML+ NFDMKDLGEADVILGIKI R ENGISLDQSHYIEK
Sbjct: 86  LYVDDMLIFGSNLHVINDVKSMLNVNFDMKDLGEADVILGIKITRFENGISLDQSHYIEK 145

Query: 61  ILKKYNYFESKPTCTPYDSSVKLFKNTSDSVNQSEYASIIGSLRYAADCTRPDIAYTIGL 120
           ILKKYNYF+SKP CTPYDSSVKLFKNT DSVNQSEYASIIGSLRYAADCTRPDIAY +GL
Sbjct: 146 ILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSEYASIIGSLRYAADCTRPDIAYAVGL 205

Query: 121 LCRFTSRLSLEHWNVIERVMRYLKKTQNLGLHYNKFSTVLEGYIDADWNSLSDDSKAISG 180
           LCRFTSR SLEHWN IERVMRYLKK QNLGLHYNKF  VLEGY DADWNS SDDSKA SG
Sbjct: 206 LCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHYNKFPAVLEGYNDADWNSRSDDSKATSG 265

Query: 181 YIFKITEGAVA 192
           YIF I    VA
Sbjct: 266 YIFNIAGEVVA 276

[Close]

BLAST of Cmc02g0050401 vs. ExPASy TrEMBL
Match: A0A5D3D4T4 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00450 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 3.8e-89
Identity = 166/191 (86.91%), Postives = 172/191 (90.05%), Query Frame = 0


Query: 1   MYVNDMLIFGSNLHIINDVKSMLSANFDMKDLGEADVILGIKIARTENGISLDQSHYIEK 60
           +YV+DMLIFGSNLH+INDVKSMLS NFDMKDLGEADVILGIKI RTENGI LDQSHYIEK
Sbjct: 86  LYVDDMLIFGSNLHVINDVKSMLSVNFDMKDLGEADVILGIKITRTENGIFLDQSHYIEK 145

Query: 61  ILKKYNYFESKPTCTPYDSSVKLFKNTSDSVNQSEYASIIGSLRYAADCTRPDIAYTIGL 120
            LKKYNYF+SKPTCTPYDSSVKLFKNT DSVNQ+EYASIIGSLRYA D TRP IAY +GL
Sbjct: 146 TLKKYNYFDSKPTCTPYDSSVKLFKNTGDSVNQTEYASIIGSLRYAVDYTRPSIAYAVGL 205

Query: 121 LCRFTSRLSLEHWNVIERVMRYLKKTQNLGLHYNKFSTVLEGYIDADWNSLSDDSKAISG 180
           LCRFTSR SLEHWN IERVMRYLKKTQNLGLHYNKF  VLEGY DADWNSL DDSKA SG
Sbjct: 206 LCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHYNKFPVVLEGYSDADWNSLLDDSKATSG 265

Query: 181 YIFKITEGAVA 192
           YIF I  GAVA
Sbjct: 266 YIFNIAGGAVA 276

[Close]

BLAST of Cmc02g0050401 vs. ExPASy TrEMBL
Match: A0A5D3DJH9 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00620 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.9e-88
Identity = 162/191 (84.82%), Postives = 172/191 (90.05%), Query Frame = 0


Query: 1   MYVNDMLIFGSNLHIINDVKSMLSANFDMKDLGEADVILGIKIARTENGISLDQSHYIEK 60
           +YV+DML F SNLH+INDVKSMLS NFDMKDLGEAD+ILGIKI RT+NGISLDQS+YIEK
Sbjct: 202 LYVDDMLSFVSNLHVINDVKSMLSVNFDMKDLGEADIILGIKITRTKNGISLDQSYYIEK 261

Query: 61  ILKKYNYFESKPTCTPYDSSVKLFKNTSDSVNQSEYASIIGSLRYAADCTRPDIAYTIGL 120
           ILKKYNYF+SKP CTPYDSSVKLFKNT D+VNQSEY SIIGSLRY ADCTRPDIAY +GL
Sbjct: 262 ILKKYNYFDSKPACTPYDSSVKLFKNTGDNVNQSEYTSIIGSLRYVADCTRPDIAYAVGL 321

Query: 121 LCRFTSRLSLEHWNVIERVMRYLKKTQNLGLHYNKFSTVLEGYIDADWNSLSDDSKAISG 180
           LCRFTSR  LEHWN IER+MRYLKKTQNLGLHYNKFSTVLEGY D DWNSLSDDSKA SG
Sbjct: 322 LCRFTSRPCLEHWNAIERIMRYLKKTQNLGLHYNKFSTVLEGYNDVDWNSLSDDSKATSG 381

Query: 181 YIFKITEGAVA 192
           YIF I  G VA
Sbjct: 382 YIFNIAGGVVA 392

[Close]

BLAST of Cmc02g0050401 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 109.4 bits (272), Expect = 3.3e-24
Identity = 59/182 (32.42%), Postives = 108/182 (59.34%), Query Frame = 0


Query: 1   MYVNDMLIFGSNLHIINDVKSMLSANFDMKDLGEADVILGIKIARTENGISLDQSHYIEK 60
           +YV+D+L+ GS+  ++N +   LS+ F MKDLG     LGI+I    +G+ L Q+ Y E+
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 61  ILKKYNYFESKPTCTPYDSSVKLFKNTSDSVNQSEYASIIGSLRYAADCTRPDIAYTIGL 120
           IL      + KP  TP    +    +T+   + S++ SI+G+L+Y    TRPDI+Y + +
Sbjct: 65  ILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLT-LTRPDISYAVNI 124

Query: 121 LCRFTSRLSLEHWNVIERVMRYLKKTQNLGLHYNKFSTV-LEGYIDADWNSLSDDSKAIS 180
           +C+     +L  +++++RV+RY+K T   GL+ +K S + ++ + D+DW   +   ++ +
Sbjct: 125 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTT 184

Query: 181 GY 182
           G+
Sbjct: 185 GF 185

[Close]

BLAST of Cmc02g0050401 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-19
Identity = 56/183 (30.60%), Postives = 99/183 (54.10%), Query Frame = 0


Query: 1   MYVNDMLIFGSNLHIINDVKSMLSANFDMKDLGEADVILGIKIARTENGISLDQSHYIEK 60
           +YV+D++I  +N   ++++KS L + F ++DLG     LG++IAR+  GI++ Q  Y   
Sbjct: 282 VYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALD 341

Query: 61  ILKKYNYFESKPTCTPYDSSVKLFKNT-SDSVNQSEYASIIGSLRYAADCTRPDIAYTIG 120
           +L +      KP+  P D SV    ++  D V+   Y  +IG L Y    TR DI++ + 
Sbjct: 342 LLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMY-LQITRLDISFAVN 401

Query: 121 LLCRFTSRLSLEHWNVIERVMRYLKKTQNLGLHYNKFSTV-LEGYIDADWNSLSDDSKAI 180
            L +F+    L H   + +++ Y+K T   GL Y+  + + L+ + DA + S  D  ++ 
Sbjct: 402 KLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRST 461

Query: 181 SGY 182
           +GY
Sbjct: 462 NGY 463

The following BLAST results are available for this feature:

BLAST of Cmc02g0050401 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK00058.1	2.2e-99	96.86	hypothetical protein E5676_scaffold596G00040 [Cucumis melo var. makuwa]	[more]
TYK06419.1	1.2e-89	86.39	hypothetical protein E5676_scaffold163G001210 [Cucumis melo var. makuwa]	[more]
KAA0032842.1	6.1e-89	86.91	hypothetical protein E6C27_scaffold1987G00140 [Cucumis melo var. makuwa] >TYK211...	[more]
KAA0060459.1	7.9e-89	86.91	hypothetical protein E6C27_scaffold22G002870 [Cucumis melo var. makuwa] >TYK1854...	[more]
KAA0058878.1	3.9e-88	84.82	putative polyprotein [Cucumis melo var. makuwa] >TYK23745.1 putative polyprotein...	[more]

BLAST of Cmc02g0050401 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.9e-33	39.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.2e-26	35.64	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	4.2e-24	36.96	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	4.2e-24	34.78	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92519	4.6e-23	32.42	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc02g0050401 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BLQ7	1.1e-99	96.86	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3C7T6	5.9e-90	86.39	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5A7SNZ1	2.9e-89	86.91	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3D4T4	3.8e-89	86.91	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3DJH9	1.9e-88	84.82	Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold160...	[more]

BLAST of Cmc02g0050401 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	3.3e-24	32.42	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	1.1e-19	30.60	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..76 e-value: 1.0E-18 score: 67.8
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 1..172
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0050401.1	Cmc02g0050401.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding