Cmc02g0050201 (gene) Melon (Charmono) v1.1

Overview
NameCmc02g0050201
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionUnknown protein
LocationCMiso1.1chr02: 16289314 .. 16291695 (+)
RNA-Seq ExpressionCmc02g0050201
SyntenyCmc02g0050201
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTGGATTAAAAATAAAAATAAAAAAGAAAATATATAAATGAATTTAGAGAAATGGAAGTTGAGGAAATAGATAGGGTTAAACAAAATTAGTAATTGGGATTAATATTTTAAATCTTTTGATTGGTAAAGCTAAACCACCCTTAAGAAGAGAAGATTAGATCGAAGGTCGATATCATTGACTCTTTATATTAAAATTTAATGCAATGTGATGGATTGAACTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTGGGGGAGGGTTCAATGAAAGTAAATAAGAAAAAAATTATAATGAAAAAAAGAAAAAAAGAATTTTACACGGTACTTATTTGTAATAGTAATAATATGATTATTATTGTAAAATTTATACTATTACTCCCAAGGGATGATGATTTGCATTTGAATCCGGTGGTGGCGCGGCTTGCCAAGCGGAAGCCGCGATAAGAGGGCGGCTATGCCAGCCGAGGGTCAAACACCCTTCGTTCTCCTCGATGGAGAATCCTTCGGCGGAGAAGAGGGTTAGAAGCATACTAGCTTGCTTGAAAGCGTTGGATCCTAAATGGAGGGCTCTAAAACCGGCTTGGCGAAGTCGAGACCTCCACTTAACCAGTGGCTCATGGCGCTCGACTCGAGCCGATCCTTCACAGCTCACCACGTTGCAAATTTCCCTCTGTAGATACATCTCCGCCAGACCCTTCTCCGGCATCATACAGCAGGCTTCAAGCGAATCAAACATGGTGGAATAGTAAAACAAAGCCTCCGTGAACCGCTCCAAGAACCCGCTCTGGTTGTGGTCCGCTTCTTGTTCAACCACCGTCATGATTTTCGGATTCAAACTCCGGATCCACCCGAGAACCATTTCCATGGCGGACGACGACTGGTTGTTCCCTAGTAATCGGTGAAGCTGCATAACAGAGTTCACCGCCACCGTCTCCTTCGGACTCACCTGAAGCATCCACGGCTTCACATCTTCCAACCTAGCCGCAGCCACACCGCGAAAGGCGAAACGAACGTTCACCGAACGGGCCAACTCAGCGAGTCGCAATCCGATTTCTCGAAGCGAGTCACGGCCGTCGGGAGAGGGTGGGCCAATGCCGGTTAAACGAAGAAGAGGAGGACCGCCGGGACGGAGGGCGAGGGCTTGGATTAATGCGGGCCATTGTAGACCGTGCATTAGATTGAAATCGATGACGTGGACGCAATCGTGACCGTCGAAGGCTTCCAAAATGGCTTGATTAGCGGTAAAATGAGCGAATTTAAGGTAAGGGCAAGCTTCGTAATAATGGTGATAGAGAAGGACGTCTTCAAAGCCGGTGGTAGAAGTGATGGTATCATGCGGTGTGAACACGCGCCAAGTTAGCGCGTCAATAAAGTAACCAGCGACTTTCCCGATGCCGCATTGGGTGTTGATGCCAGACAGCAAACTTTGCATTTCGACAATCAGAGAACCAGCCAATGGGAAGTCACCACGGTGGATTGAATCGGCACACGTGACTAGCATGTGGACCAGTTTAATACCGGAATCTTCCTCCATGGCGGTCACGACGGTTAGCTGATGCTGAGCAAGGTTCTGGTGTTGCGCACCAACACAAGGATCTGTCCACGACACACTCCCATCCGTCTGATTACAAACCGAAAACAGATCGGGAAAATCCGGTAGATCGGACGGCAAAGTAGCCGTTTGGTTCAACTCGGACAGAATTGAATCAACCCAAGAACCCAGGTCGGAAGGGTTGTAGTGGACGGCATCCGAAGCGAGTTGAGAGATCTCAGAGGAAGAGTTGACCATAGCGGATTCCAGACGCTCAAGACTTTGAGCGACGTGGTGAAGGTCGGAGGAGCGGACCTTGTAACCCGCGCCGGCGAGAAGGCCGTCGATGTCTTGGGGTTTGGTGACAGTACTTGAGGAAGAGCTGCCACTGCTACTGCTACTGCTGCCGCCGGAAGAGGCGGCGGAGTCGAAAGGACCCATGAACGAAATCAGATAATTTAGAGAGGTAGAAATGAAAGGAAGACGGTTGTTGGGAGAAGGAGCAATATAATTAGGGAGATTTTAAGTTGACCATGGCCATAGAGAAACCACGGAGTTGTGTGTGTGAGAGTGAGGGAGGTACTGAAAAGCAATGGGTGAAAGAGAAAGGACCAAAAAAGGATTTTTAGAGAGAGAAAGAGAGATAGAGAGAGGCTGTGTATTTGAGAATTTAAGAACCAATATTGGAAAATCTGGAAATAACCAATGAACCCACCGATCAAACTTGGGCTTATTTTTTCTAATTTATCTCAAGAGTTAAATTTTATTCTAATTTCTATTGCGGAGTTGAGATTGGGACCTACCGGCTACCACATTTTAATAATAATTATTATTTTTATTTCAAA

mRNA sequence

CTTGGATTAAAAATAAAAATAAAAAAGAAAATATATAAATGAATTTAGAGAAATGGAAGTTGAGGAAATAGATAGGGTTAAACAAAATTAGTAATTGGGATTAATATTTTAAATCTTTTGATTGGTAAAGCTAAACCACCCTTAAGAAGAGAAGATTAGATCGAAGGTCGATATCATTGACTCTTTATATTAAAATTTAATGCAATGTGATGGATTGAACTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTGGGGGAGGGTTCAATGAAAGTAAATAAGAAAAAAATTATAATGAAAAAAAGAAAAAAAGAATTTTACACGGTACTTATTTGTAATAGTAATAATATGATTATTATTGTAAAATTTATACTATTACTCCCAAGGGATGATGATTTGCATTTGAATCCGGTGGTGGCGCGGCTTGCCAAGCGGAAGCCGCGATAAGAGGGCGGCTATGCCAGCCGAGGGTCAAACACCCTTCGTTCTCCTCGATGGAGAATCCTTCGGCGGAGAAGAGGGTTAGAAGCATACTAGCTTGCTTGAAAGCGTTGGATCCTAAATGGAGGGCTCTAAAACCGGCTTGGCGAAGTCGAGACCTCCACTTAACCAGTGGCTCATGGCGCTCGACTCGAGCCGATCCTTCACAGCTCACCACGTTGCAAATTTCCCTCTGTAGATACATCTCCGCCAGACCCTTCTCCGGCATCATACAGCAGGCTTCAAGCGAATCAAACATGGTGGAATAGTAAAACAAAGCCTCCGTGAACCGCTCCAAGAACCCGCTCTGGTTGTGGTCCGCTTCTTGTTCAACCACCGTCATGATTTTCGGATTCAAACTCCGGATCCACCCGAGAACCATTTCCATGGCGGACGACGACTGGTTGTTCCCTAGTAATCGGTGAAGCTGCATAACAGAGTTCACCGCCACCGTCTCCTTCGGACTCACCTGAAGCATCCACGGCTTCACATCTTCCAACCTAGCCGCAGCCACACCGCGAAAGGCGAAACGAACGTTCACCGAACGGGCCAACTCAGCGAGTCGCAATCCGATTTCTCGAAGCGAGTCACGGCCGTCGGGAGAGGGTGGGCCAATGCCGGTTAAACGAAGAAGAGGAGGACCGCCGGGACGGAGGGCGAGGGCTTGGATTAATGCGGGCCATTGTAGACCGTGCATTAGATTGAAATCGATGACGTGGACGCAATCGTGACCGTCGAAGGCTTCCAAAATGGCTTGATTAGCGGTAAAATGAGCGAATTTAAGGTAAGGGCAAGCTTCGTAATAATGGTGATAGAGAAGGACGTCTTCAAAGCCGGTGGTAGAAGTGATGGTATCATGCGGTGTGAACACGCGCCAAGTTAGCGCGTCAATAAAGTAACCAGCGACTTTCCCGATGCCGCATTGGGTGTTGATGCCAGACAGCAAACTTTGCATTTCGACAATCAGAGAACCAGCCAATGGGAAGTCACCACGGTGGATTGAATCGGCACACGTGACTAGCATGTGGACCAGTTTAATACCGGAATCTTCCTCCATGGCGGTCACGACGGTTAGCTGATGCTGAGCAAGGTTCTGGTGTTGCGCACCAACACAAGGATCTGTCCACGACACACTCCCATCCGTCTGATTACAAACCGAAAACAGATCGGGAAAATCCGGTAGATCGGACGGCAAAGTAGCCGTTTGGTTCAACTCGGACAGAATTGAATCAACCCAAGAACCCAGGTCGGAAGGGTTGTAGTGGACGGCATCCGAAGCGAGTTGAGAGATCTCAGAGGAAGAGTTGACCATAGCGGATTCCAGACGCTCAAGACTTTGAGCGACGTGGTGAAGGTCGGAGGAGCGGACCTTGTAACCCGCGCCGGCGAGAAGGCCGTCGATGTCTTGGGGTTTGGTGACAGTACTTGAGGAAGAGCTGCCACTGCTACTGCTACTGCTGCCGCCGGAAGAGGCGGCGGAGTCGAAAGGACCCATGAACGAAATCAGATAATTTAGAGAGGTAGAAATGAAAGGAAGACGGTTGTTGGGAGAAGGAGCAATATAATTAGGGAGATTTTAAGTTGACCATGGCCATAGAGAAACCACGGAGTTGTGTGTGTGAGAGTGAGGGAGGTACTGAAAAGCAATGGGTGAAAGAGAAAGGACCAAAAAAGGATTTTTAGAGAGAGAAAGAGAGATAGAGAGAGGCTGTGTATTTGAGAATTTAAGAACCAATATTGGAAAATCTGGAAATAACCAATGAACCCACCGATCAAACTTGGGCTTATTTTTTCTAATTTATCTCAAGAGTTAAATTTTATTCTAATTTCTATTGCGGAGTTGAGATTGGGACCTACCGGCTACCACATTTTAATAATAATTATTATTTTTATTTCAAA

Coding sequence (CDS)

ATGGAGAATCCTTCGGCGGAGAAGAGGGTTAGAAGCATACTAGCTTGCTTGAAAGCGTTGGATCCTAAATGGAGGGCTCTAAAACCGGCTTGGCGAAGTCGAGACCTCCACTTAACCAGTGGCTCATGGCGCTCGACTCGAGCCGATCCTTCACAGCTCACCACGTTGCAAATTTCCCTCTGTAGATACATCTCCGCCAGACCCTTCTCCGGCATCATACAGCAGGCTTCAAGCGAATCAAACATGGTGGAATAG

Protein sequence

MENPSAEKRVRSILACLKALDPKWRALKPAWRSRDLHLTSGSWRSTRADPSQLTTLQISLCRYISARPFSGIIQQASSESNMVE
Homology
[Close]
BLAST of Cmc02g0050201 vs. NCBI nr
Match: CDP03392.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 93.6 bits (231), Expect = 8.8e-16
Identity = 51/84 (60.71%), Postives = 59/84 (70.24%), Query Frame = 0 

Query: 1   MENPSAEKRVRSILACLKALDPKWRALKPAWRSRDLHLTSGSWRSTRADPSQLTTLQISL 60
           ++ PSAE  V SILACL ALDPK+  LKPA  SR  HL +GS  STRA+ SQ T L IS 
Sbjct: 18  IQYPSAENNVNSILACLNALDPKYSGLKPAPFSRAFHLANGSCLSTRAESSQHTMLHISF 77

Query: 61  CRYISARPFSGIIQQASSESNMVE 85
           C YISA+  S   +QASSESN+VE
Sbjct: 78  CMYISAKTLSARFEQASSESNIVE 101

[Close]
BLAST of Cmc02g0050201 vs. ExPASy TrEMBL
Match: A0A068U4Z9 (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00041957001 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.2e-16
Identity = 51/84 (60.71%), Postives = 59/84 (70.24%), Query Frame = 0 

Query: 1   MENPSAEKRVRSILACLKALDPKWRALKPAWRSRDLHLTSGSWRSTRADPSQLTTLQISL 60
           ++ PSAE  V SILACL ALDPK+  LKPA  SR  HL +GS  STRA+ SQ T L IS 
Sbjct: 18  IQYPSAENNVNSILACLNALDPKYSGLKPAPFSRAFHLANGSCLSTRAESSQHTMLHISF 77

Query: 61  CRYISARPFSGIIQQASSESNMVE 85
           C YISA+  S   +QASSESN+VE
Sbjct: 78  CMYISAKTLSARFEQASSESNIVE 101

The following BLAST results are available for this feature:
BLAST of Cmc02g0050201 vs. NCBI nr
Match NameE-valueIdentityDescription
CDP03392.18.8e-1660.71unnamed protein product [Coffea canephora][more]
BLAST of Cmc02g0050201 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc02g0050201 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A068U4Z94.2e-1660.71Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00041957001 PE=4 ... [more]
BLAST of Cmc02g0050201 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc02g0050201.1Cmc02g0050201.1mRNA