Cmc02g0050181 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0050181
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Location	CMiso1.1chr02: 16214911 .. 16215669 (-)
RNA-Seq Expression	Cmc02g0050181
Synteny	Cmc02g0050181

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACCCGGGTAGTACGAAGATGTATCAGGACCTGAAGCGGGTTTATTGGTGGCGTAACATGAAGAGGGAGGTAGCAGAATTTGTTAGTAGATGCTTGGTGTGTCAGCAGGTTAAGGCACCAAGGCAGAAACCAGCGGGTTTATTACAACCCTTGAGCATACCGAAATGGAAGTGGGAAAACGTATCCATGGATTTCATTACAGGACTGCCGAGAACTCCGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGGCTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGCTGTACATGTCGGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACGGCTATGGGAACGAGGTTAGACTTTAGTACAGCTTTCCATCCACAGACTGACGGTCAGACTGAGCATCTGAACCAAGTTTTAGAGGATATGTTGCGGGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCATTTGCATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCATTTGAGGCCTTGTACGGCAAATGTTGTAGATCCCCGGTTTGCTGGGGTGAGGTGGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATATTGAAGATTAGATCACGCATGCATACCGCTTAG

mRNA sequence

ATGCACCCGGGTAGTACGAAGATGTATCAGGACCTGAAGCGGGTTTATTGGTGGCGTAACATGAAGAGGGAGGTAGCAGAATTTGTTAGTAGATGCTTGGTGTGTCAGCAGGTTAAGGCACCAAGGCAGAAACCAGCGGGTTTATTACAACCCTTGAGCATACCGAAATGGAAGTGGGAAAACGTATCCATGGATTTCATTACAGGACTGCCGAGAACTCCGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGGCTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGCTGTACATGTCGGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACGGCTATGGGAACGAGGTTAGACTTTAGTACAGCTTTCCATCCACAGACTGACGGTCAGACTGAGCATCTGAACCAAGTTTTAGAGGATATGTTGCGGGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCATTTGCATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCATTTGAGGCCTTGTACGGCAAATGTTGTAGATCCCCGGTTTGCTGGGGTGAGGTGGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATATTGAAGATTAGATCACGCATGCATACCGCTTAG

Coding sequence (CDS)

ATGCACCCGGGTAGTACGAAGATGTATCAGGACCTGAAGCGGGTTTATTGGTGGCGTAACATGAAGAGGGAGGTAGCAGAATTTGTTAGTAGATGCTTGGTGTGTCAGCAGGTTAAGGCACCAAGGCAGAAACCAGCGGGTTTATTACAACCCTTGAGCATACCGAAATGGAAGTGGGAAAACGTATCCATGGATTTCATTACAGGACTGCCGAGAACTCCGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGGCTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGCTGTACATGTCGGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACGGCTATGGGAACGAGGTTAGACTTTAGTACAGCTTTCCATCCACAGACTGACGGTCAGACTGAGCATCTGAACCAAGTTTTAGAGGATATGTTGCGGGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCATTTGCATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCATTTGAGGCCTTGTACGGCAAATGTTGTAGATCCCCGGTTTGCTGGGGTGAGGTGGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATATTGAAGATTAGATCACGCATGCATACCGCTTAG

Protein sequence

MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWENVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAILKIRSRMHTA

Homology

[Close]

BLAST of Cmc02g0050181 vs. NCBI nr
Match: KAA0040699.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 523.5 bits (1347), Expect = 1.0e-144
Identity = 247/252 (98.02%), Postives = 249/252 (98.81%), Query Frame = 0


Query: 1    MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWE 60
            MHPGSTKMYQDLKRVYWWRNMKR+VAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWE
Sbjct: 1192 MHPGSTKMYQDLKRVYWWRNMKRKVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWE 1251

Query: 61   NVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 120
            NVSMDFITGLPRT RGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Sbjct: 1252 NVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 1311

Query: 121  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFP 180
            VSIVSDRDARFTSKFWKGLQTAMG+RLDFSTAFHPQTDGQTE LNQVLEDMLRACALEFP
Sbjct: 1312 VSIVSDRDARFTSKFWKGLQTAMGSRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFP 1371

Query: 181  GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNE 240
            GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNE
Sbjct: 1372 GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNE 1431

Query: 241  AILKIRSRMHTA 253
            AI KIRSRMHTA
Sbjct: 1432 AIQKIRSRMHTA 1443

[Close]

BLAST of Cmc02g0050181 vs. NCBI nr
Match: KAA0047043.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 522.7 bits (1345), Expect = 1.8e-144
Identity = 247/252 (98.02%), Postives = 248/252 (98.41%), Query Frame = 0


Query: 1   MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWE 60
           MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIP+WKWE
Sbjct: 143 MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWE 202

Query: 61  NVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 120
           NVSMDFITGLPRT RGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Sbjct: 203 NVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 262

Query: 121 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFP 180
           VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTE LNQVLEDMLRACALEFP
Sbjct: 263 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFP 322

Query: 181 GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNE 240
           GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQS NE
Sbjct: 323 GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSINE 382

Query: 241 AILKIRSRMHTA 253
           AI KIRSRMHTA
Sbjct: 383 AIQKIRSRMHTA 394

[Close]

BLAST of Cmc02g0050181 vs. NCBI nr
Match: KAA0065438.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 522.7 bits (1345), Expect = 1.8e-144
Identity = 247/252 (98.02%), Postives = 248/252 (98.41%), Query Frame = 0


Query: 1   MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWE 60
           MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIP+WKWE
Sbjct: 271 MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWE 330

Query: 61  NVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 120
           NVSMDFITGLPRT RGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Sbjct: 331 NVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 390

Query: 121 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFP 180
           VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTE LNQVLEDMLRACALEFP
Sbjct: 391 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFP 450

Query: 181 GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNE 240
           GSWDSHLHLMEFAYNNSYQATI MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNE
Sbjct: 451 GSWDSHLHLMEFAYNNSYQATISMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNE 510

Query: 241 AILKIRSRMHTA 253
           AI KIRSRMHTA
Sbjct: 511 AIQKIRSRMHTA 522

[Close]

BLAST of Cmc02g0050181 vs. NCBI nr
Match: KAA0035938.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 522.7 bits (1345), Expect = 1.8e-144
Identity = 246/252 (97.62%), Postives = 249/252 (98.81%), Query Frame = 0


Query: 1   MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWE 60
           MHPGSTKMYQDLKRVYWWRNMKREVAEFVS+CLVCQQVKAPRQKPAGLLQPLSIP+WKWE
Sbjct: 399 MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWE 458

Query: 61  NVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 120
           NVSMDFITGLPRT RGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Sbjct: 459 NVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 518

Query: 121 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFP 180
           VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTE LNQVLEDMLRACALEFP
Sbjct: 519 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFP 578

Query: 181 GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNE 240
           GSWD+HLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNE
Sbjct: 579 GSWDAHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNE 638

Query: 241 AILKIRSRMHTA 253
           AI KIRSRMHTA
Sbjct: 639 AIQKIRSRMHTA 650

[Close]

BLAST of Cmc02g0050181 vs. NCBI nr
Match: KAA0051368.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 522.7 bits (1345), Expect = 1.8e-144
Identity = 246/252 (97.62%), Postives = 249/252 (98.81%), Query Frame = 0


Query: 1    MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWE 60
            MHPGSTKMYQDLKRVYWWRNMKREVAEFVS+CLVCQQVKAPRQKPAGLLQPLSIP+WKWE
Sbjct: 1039 MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWE 1098

Query: 61   NVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 120
            NVSMDFITGLPRT RGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Sbjct: 1099 NVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 1158

Query: 121  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFP 180
            VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTE LNQVLEDMLRACALEFP
Sbjct: 1159 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFP 1218

Query: 181  GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNE 240
            GSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNE
Sbjct: 1219 GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNE 1278

Query: 241  AILKIRSRMHTA 253
            AI KIRSRMHTA
Sbjct: 1279 AIQKIRSRMHTA 1290

[Close]

BLAST of Cmc02g0050181 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 167.9 bits (424), Expect = 1.4e-40
Identity = 87/253 (34.39%), Postives = 135/253 (53.36%), Query Frame = 0


Query: 2    HPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWEN 61
            H G T     +  +Y+W  ++  + +++  C+ CQ +K+ R +  GLLQPL I + +W +
Sbjct: 1112 HFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLD 1171

Query: 62   VSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPV 121
            +SMDF+TGLP T     +I VVVDR +K AHF+  + T  A++   L    I   HG P 
Sbjct: 1172 ISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPR 1231

Query: 122  SIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPG 181
            +I SDRD R T+  ++ L   +G +   S+A HPQTDGQ+E   Q L  +LRA A     
Sbjct: 1232 TITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQ 1291

Query: 182  SWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG--EVGEQRLMGPELVQSTN 241
            +W  +L  +EF YN++   T+G +PFE   G    +P      EV  +     EL +   
Sbjct: 1292 NWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFTAVELAKHLK 1351

Query: 242  EAILKIRSRMHTA 253
               ++ + ++  A
Sbjct: 1352 ALTIQTKEQLEHA 1364

[Close]

BLAST of Cmc02g0050181 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 166.4 bits (420), Expect = 4.2e-40
Identity = 86/253 (33.99%), Postives = 134/253 (52.96%), Query Frame = 0


Query: 2    HPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWEN 61
            H G T     +  +Y+W  ++  + +++  C+ CQ +K+ R +  GLLQPL I + +W +
Sbjct: 1138 HFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLD 1197

Query: 62   VSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPV 121
            +SMDF+TGLP T     +I VVVDR +K AHF+  + T  A++   L    I   HG P 
Sbjct: 1198 ISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPR 1257

Query: 122  SIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFPG 181
            +I SDRD R T+  ++ L   +G +   S+A HPQTDGQ+E   Q L  +LRA       
Sbjct: 1258 TITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYVSTNIQ 1317

Query: 182  SWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG--EVGEQRLMGPELVQSTN 241
            +W  +L  +EF YN++   T+G +PFE   G    +P      EV  +     EL +   
Sbjct: 1318 NWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFTAVELAKHLK 1377

Query: 242  EAILKIRSRMHTA 253
               ++ + ++  A
Sbjct: 1378 ALTIQTKEQLEHA 1390

[Close]

BLAST of Cmc02g0050181 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 4.6e-39
Identity = 76/211 (36.02%), Postives = 120/211 (56.87%), Query Frame = 0


Query: 1    MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWE 60
            +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   KP G LQP+   +  WE
Sbjct: 926  IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWE 985

Query: 61   NVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 120
            ++SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P
Sbjct: 986  SLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1045

Query: 121  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFP 180
              I++D D  FTS+ WK         + FS  + PQTDGQTE  NQ +E +LR      P
Sbjct: 1046 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1105

Query: 181  GSWDSHLHLMEFAYNNSYQATIGMAPFEALY 212
             +W  H+ L++ +YNN+  +   M PFE ++
Sbjct: 1106 NTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc02g0050181 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 4.6e-39
Identity = 76/211 (36.02%), Postives = 120/211 (56.87%), Query Frame = 0


Query: 1    MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWE 60
            +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   KP G LQP+   +  WE
Sbjct: 926  IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWE 985

Query: 61   NVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 120
            ++SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P
Sbjct: 986  SLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1045

Query: 121  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFP 180
              I++D D  FTS+ WK         + FS  + PQTDGQTE  NQ +E +LR      P
Sbjct: 1046 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1105

Query: 181  GSWDSHLHLMEFAYNNSYQATIGMAPFEALY 212
             +W  H+ L++ +YNN+  +   M PFE ++
Sbjct: 1106 NTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc02g0050181 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 4.6e-39
Identity = 76/211 (36.02%), Postives = 120/211 (56.87%), Query Frame = 0


Query: 1    MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWE 60
            +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   KP G LQP+   +  WE
Sbjct: 926  IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWE 985

Query: 61   NVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 120
            ++SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P
Sbjct: 986  SLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1045

Query: 121  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFP 180
              I++D D  FTS+ WK         + FS  + PQTDGQTE  NQ +E +LR      P
Sbjct: 1046 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1105

Query: 181  GSWDSHLHLMEFAYNNSYQATIGMAPFEALY 212
             +W  H+ L++ +YNN+  +   M PFE ++
Sbjct: 1106 NTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc02g0050181 vs. ExPASy TrEMBL
Match: A0A5A7THF3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold529G00140 PE=4 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 5.0e-145
Identity = 247/252 (98.02%), Postives = 249/252 (98.81%), Query Frame = 0


Query: 1    MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWE 60
            MHPGSTKMYQDLKRVYWWRNMKR+VAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWE
Sbjct: 1192 MHPGSTKMYQDLKRVYWWRNMKRKVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWE 1251

Query: 61   NVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 120
            NVSMDFITGLPRT RGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Sbjct: 1252 NVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 1311

Query: 121  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFP 180
            VSIVSDRDARFTSKFWKGLQTAMG+RLDFSTAFHPQTDGQTE LNQVLEDMLRACALEFP
Sbjct: 1312 VSIVSDRDARFTSKFWKGLQTAMGSRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFP 1371

Query: 181  GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNE 240
            GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNE
Sbjct: 1372 GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNE 1431

Query: 241  AILKIRSRMHTA 253
            AI KIRSRMHTA
Sbjct: 1432 AIQKIRSRMHTA 1443

[Close]

BLAST of Cmc02g0050181 vs. ExPASy TrEMBL
Match: A0A5A7SZD6 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G001250 PE=4 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 8.5e-145
Identity = 246/252 (97.62%), Postives = 249/252 (98.81%), Query Frame = 0


Query: 1   MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWE 60
           MHPGSTKMYQDLKRVYWWRNMKREVAEFVS+CLVCQQVKAPRQKPAGLLQPLSIP+WKWE
Sbjct: 399 MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWE 458

Query: 61  NVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 120
           NVSMDFITGLPRT RGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Sbjct: 459 NVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 518

Query: 121 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFP 180
           VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTE LNQVLEDMLRACALEFP
Sbjct: 519 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFP 578

Query: 181 GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNE 240
           GSWD+HLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNE
Sbjct: 579 GSWDAHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNE 638

Query: 241 AILKIRSRMHTA 253
           AI KIRSRMHTA
Sbjct: 639 AIQKIRSRMHTA 650

[Close]

BLAST of Cmc02g0050181 vs. ExPASy TrEMBL
Match: A0A5A7U7V9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00950 PE=4 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 8.5e-145
Identity = 246/252 (97.62%), Postives = 249/252 (98.81%), Query Frame = 0


Query: 1    MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWE 60
            MHPGSTKMYQDLKRVYWWRNMKREVAEFVS+CLVCQQVKAPRQKPAGLLQPLSIP+WKWE
Sbjct: 1039 MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWE 1098

Query: 61   NVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 120
            NVSMDFITGLPRT RGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Sbjct: 1099 NVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 1158

Query: 121  VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFP 180
            VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTE LNQVLEDMLRACALEFP
Sbjct: 1159 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFP 1218

Query: 181  GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNE 240
            GSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNE
Sbjct: 1219 GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNE 1278

Query: 241  AILKIRSRMHTA 253
            AI KIRSRMHTA
Sbjct: 1279 AIQKIRSRMHTA 1290

[Close]

BLAST of Cmc02g0050181 vs. ExPASy TrEMBL
Match: A0A5A7VCT0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001190 PE=4 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 8.5e-145
Identity = 247/252 (98.02%), Postives = 248/252 (98.41%), Query Frame = 0


Query: 1   MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWE 60
           MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIP+WKWE
Sbjct: 271 MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWE 330

Query: 61  NVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 120
           NVSMDFITGLPRT RGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Sbjct: 331 NVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 390

Query: 121 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFP 180
           VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTE LNQVLEDMLRACALEFP
Sbjct: 391 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFP 450

Query: 181 GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNE 240
           GSWDSHLHLMEFAYNNSYQATI MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNE
Sbjct: 451 GSWDSHLHLMEFAYNNSYQATISMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNE 510

Query: 241 AILKIRSRMHTA 253
           AI KIRSRMHTA
Sbjct: 511 AIQKIRSRMHTA 522

[Close]

BLAST of Cmc02g0050181 vs. ExPASy TrEMBL
Match: A0A5A7TU00 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold829G00280 PE=4 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 8.5e-145
Identity = 247/252 (98.02%), Postives = 248/252 (98.41%), Query Frame = 0


Query: 1   MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPKWKWE 60
           MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIP+WKWE
Sbjct: 143 MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWE 202

Query: 61  NVSMDFITGLPRTPRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 120
           NVSMDFITGLPRT RGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP
Sbjct: 203 NVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVP 262

Query: 121 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTEHLNQVLEDMLRACALEFP 180
           VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTE LNQVLEDMLRACALEFP
Sbjct: 263 VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFP 322

Query: 181 GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNE 240
           GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQS NE
Sbjct: 323 GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSINE 382

Query: 241 AILKIRSRMHTA 253
           AI KIRSRMHTA
Sbjct: 383 AIQKIRSRMHTA 394

The following BLAST results are available for this feature:

BLAST of Cmc02g0050181 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040699.1	1.0e-144	98.02	pol protein [Cucumis melo var. makuwa]	[more]
KAA0047043.1	1.8e-144	98.02	pol protein [Cucumis melo var. makuwa]	[more]
KAA0065438.1	1.8e-144	98.02	pol protein [Cucumis melo var. makuwa]	[more]
KAA0035938.1	1.8e-144	97.62	pol protein [Cucumis melo var. makuwa]	[more]
KAA0051368.1	1.8e-144	97.62	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc02g0050181 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	1.4e-40	34.39	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	4.2e-40	33.99	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	4.6e-39	36.02	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	4.6e-39	36.02	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	4.6e-39	36.02	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc02g0050181 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7THF3	5.0e-145	98.02	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold52...	[more]
A0A5A7SZD6	8.5e-145	97.62	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G001250 PE...	[more]
A0A5A7U7V9	8.5e-145	97.62	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7VCT0	8.5e-145	98.02	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001190 PE...	[more]
A0A5A7TU00	8.5e-145	98.02	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold829G00280 PE...	[more]

BLAST of Cmc02g0050181 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 2..40 e-value: 1.3E-13 score: 50.7
None	No IPR available	GENE3D	1.10.340.70		coord: 1..39 e-value: 8.4E-12 score: 47.2
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 1..209
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 48..248 e-value: 5.0E-46 score: 158.5
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 51..214 score: 17.988268
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 52..212

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0050181.1	Cmc02g0050181.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding