Cmc02g0050121 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0050121
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr02: 16100349 .. 16100807 (-)
RNA-Seq Expression	Cmc02g0050121
Synteny	Cmc02g0050121

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAAAGTTGATTAGAATACTCTTATCCATTGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGACAGCCTTTTTGAATGAAAATCTTGAGGAGAGTATCTATATGGTTCAACCAGAGGGGTTTATACAAAAGGGTCAAGAACAAAAGATTTGTAAGCTTCAAAAATCCATATATGGATTAAAACAAGCATCTAGATCCTGGAATATAAGGTTTGATACTCTAATCAAATCTTATGGTTTTGAACAAAATGTTGATGAACCTTGTGTTTACAAAAGGATTATCAAATCCACTGTAGCATTCTCAGTTCTGTATGTAGATGACATTCTACTCATTAGGAATGATATAGGTCATCTAACTGATATTAAGAAATGGCTAGCTACGCAATTCCAAATGAAAGATTTGAGAAATGCTCAATACGTTCTTGGTATCCAAATAGTTCGGAACTGA

mRNA sequence

ATGCTAAAGTTGATTAGAATACTCTTATCCATTGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGACAGCCTTTTTGAATGAAAATCTTGAGGAGAGTATCTATATGGTTCAACCAGAGGGGTTTATACAAAAGGGTCAAGAACAAAAGATTTGTAAGCTTCAAAAATCCATATATGGATTAAAACAAGCATCTAGATCCTGGAATATAAGGTTTGATACTCTAATCAAATCTTATGGTTTTGAACAAAATGTTGATGAACCTTGTGTTTACAAAAGGATTATCAAATCCACTGTAGCATTCTCAGTTCTGTATGTAGATGACATTCTACTCATTAGGAATGATATAGGTCATCTAACTGATATTAAGAAATGGCTAGCTACGCAATTCCAAATGAAAGATTTGAGAAATGCTCAATACGTTCTTGGTATCCAAATAGTTCGGAACTGA

Coding sequence (CDS)

ATGCTAAAGTTGATTAGAATACTCTTATCCATTGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGACAGCCTTTTTGAATGAAAATCTTGAGGAGAGTATCTATATGGTTCAACCAGAGGGGTTTATACAAAAGGGTCAAGAACAAAAGATTTGTAAGCTTCAAAAATCCATATATGGATTAAAACAAGCATCTAGATCCTGGAATATAAGGTTTGATACTCTAATCAAATCTTATGGTTTTGAACAAAATGTTGATGAACCTTGTGTTTACAAAAGGATTATCAAATCCACTGTAGCATTCTCAGTTCTGTATGTAGATGACATTCTACTCATTAGGAATGATATAGGTCATCTAACTGATATTAAGAAATGGCTAGCTACGCAATTCCAAATGAAAGATTTGAGAAATGCTCAATACGTTCTTGGTATCCAAATAGTTCGGAACTGA

Protein sequence

MLKLIRILLSIATFYDYEIWQMDVKTAFLNENLEESIYMVQPEGFIQKGQEQKICKLQKSIYGLKQASRSWNIRFDTLIKSYGFEQNVDEPCVYKRIIKSTVAFSVLYVDDILLIRNDIGHLTDIKKWLATQFQMKDLRNAQYVLGIQIVRN

Homology

[Close]

BLAST of Cmc02g0050121 vs. NCBI nr
Match: KAA0045356.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 273.1 bits (697), Expect = 1.5e-69
Identity = 136/152 (89.47%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MLKLIRILLSIATFYDYEIWQMDVKTAFLNENLEESIYMVQPEGFIQKGQEQKICKLQKS 60
           M+K IRILLSIATFYDYEIWQMDVKTAFLN NLEESIYMVQPEGFIQKGQEQK+CKLQKS
Sbjct: 224 MIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKS 283

Query: 61  IYGLKQASRSWNIRFDTLIKSYGFEQNVDEPCVYKRIIKSTVAFSVLYVDDILLIRNDIG 120
           IYGLKQASRSWNIRFDT IKSYGFEQNVDEPCVYKRII STVAF VLYVDDILLI N++ 
Sbjct: 284 IYGLKQASRSWNIRFDTGIKSYGFEQNVDEPCVYKRIINSTVAFLVLYVDDILLIGNEVD 343

Query: 121 HLTDIKKWLATQFQMKDLRNAQYVLGIQIVRN 153
           HLTDIK+WL TQFQMKDL +AQYVLGIQIV+N
Sbjct: 344 HLTDIKEWLDTQFQMKDLGSAQYVLGIQIVQN 375

[Close]

BLAST of Cmc02g0050121 vs. NCBI nr
Match: TYK03644.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 268.9 bits (686), Expect = 2.8e-68
Identity = 135/152 (88.82%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MLKLIRILLSIATFYDYEIWQMDVKTAFLNENLEESIYMVQPEGFIQKGQEQKICKLQKS 60
           M+K IRILLSIATFYDYEIWQMDVKT FLN NLEESIYMVQPE FIQKGQEQKICKLQKS
Sbjct: 318 MIKSIRILLSIATFYDYEIWQMDVKTTFLNANLEESIYMVQPERFIQKGQEQKICKLQKS 377

Query: 61  IYGLKQASRSWNIRFDTLIKSYGFEQNVDEPCVYKRIIKSTVAFSVLYVDDILLIRNDIG 120
           IYGLKQASRS NIRFDT IKSYG EQNVDEPCVYKRI+ STVAF VLYVDDILLI ND+G
Sbjct: 378 IYGLKQASRSCNIRFDTAIKSYGLEQNVDEPCVYKRIMNSTVAFLVLYVDDILLIGNDVG 437

Query: 121 HLTDIKKWLATQFQMKDLRNAQYVLGIQIVRN 153
           HL DIKKWLA QFQMKDL NAQYVLG+QIVRN
Sbjct: 438 HLADIKKWLAMQFQMKDLGNAQYVLGVQIVRN 469

[Close]

BLAST of Cmc02g0050121 vs. NCBI nr
Match: TYK09500.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 268.9 bits (686), Expect = 2.8e-68
Identity = 131/152 (86.18%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 1   MLKLIRILLSIATFYDYEIWQMDVKTAFLNENLEESIYMVQPEGFIQKGQEQKICKLQKS 60
           MLK IRILLSIATFYDYEIWQ+DVKTAFLN NLEESIYM QPEGFI+KGQEQKICK QKS
Sbjct: 1   MLKSIRILLSIATFYDYEIWQIDVKTAFLNGNLEESIYMAQPEGFIKKGQEQKICKFQKS 60

Query: 61  IYGLKQASRSWNIRFDTLIKSYGFEQNVDEPCVYKRIIKSTVAFSVLYVDDILLIRNDIG 120
           IYGLKQASRSWNIRFDT IKSYGFEQNVD+PCVYK+++ S VAF VLYVDDILL+ ND+G
Sbjct: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDKPCVYKKVVNSIVAFLVLYVDDILLVGNDVG 120

Query: 121 HLTDIKKWLATQFQMKDLRNAQYVLGIQIVRN 153
           +LTDIKKWLATQFQMKD  +AQYVLGIQIVRN
Sbjct: 121 YLTDIKKWLATQFQMKDFGDAQYVLGIQIVRN 152

[Close]

BLAST of Cmc02g0050121 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 263.5 bits (672), Expect = 1.2e-66
Identity = 129/152 (84.87%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1    MLKLIRILLSIATFYDYEIWQMDVKTAFLNENLEESIYMVQPEGFIQKGQEQKICKLQKS 60
            MLK IRILLSIATFY+YEIWQMDVKTAFLN NLEESIYMVQPEGFI + QEQK+CKLQKS
Sbjct: 894  MLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKLQKS 953

Query: 61   IYGLKQASRSWNIRFDTLIKSYGFEQNVDEPCVYKRIIKSTVAFSVLYVDDILLIRNDIG 120
            IYGLKQASRSWNIRFDT IKSYGFEQNVDEPCVYK+I+ S VAF +LYVDDILLI ND+ 
Sbjct: 954  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVDDILLIGNDVE 1013

Query: 121  HLTDIKKWLATQFQMKDLRNAQYVLGIQIVRN 153
            +LTD+KKWL TQFQMKDL  AQY+LGIQIVRN
Sbjct: 1014 YLTDVKKWLNTQFQMKDLGEAQYILGIQIVRN 1045

[Close]

BLAST of Cmc02g0050121 vs. NCBI nr
Match: KAA0058278.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 259.6 bits (662), Expect = 1.7e-65
Identity = 126/152 (82.89%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 1   MLKLIRILLSIATFYDYEIWQMDVKTAFLNENLEESIYMVQPEGFIQKGQEQKICKLQKS 60
           MLK IRILLSIATFYDYEIWQMDVKTAFLN+NLEESI+M QPEGFI +GQEQK+CKL +S
Sbjct: 642 MLKSIRILLSIATFYDYEIWQMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRS 701

Query: 61  IYGLKQASRSWNIRFDTLIKSYGFEQNVDEPCVYKRIIKSTVAFSVLYVDDILLIRNDIG 120
           IYGLKQASRSWNIRFDT IKSYGF+QNVDEPCVYK+I K  VAF VLYVDDILLI ND+G
Sbjct: 702 IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 761

Query: 121 HLTDIKKWLATQFQMKDLRNAQYVLGIQIVRN 153
           +LTD+K WLA QFQMKDL  AQYVLGIQI+R+
Sbjct: 762 YLTDVKAWLAAQFQMKDLEEAQYVLGIQIIRD 793

[Close]

BLAST of Cmc02g0050121 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.7e-33
Identity = 72/148 (48.65%), Postives = 101/148 (68.24%), Query Frame = 0


Query: 5    IRILLSIATFYDYEIWQMDVKTAFLNENLEESIYMVQPEGFIQKGQEQKICKLQKSIYGL 64
            IR +LS+A   D E+ Q+DVKTAFL+ +LEE IYM QPEGF   G++  +CKL KS+YGL
Sbjct: 904  IRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGL 963

Query: 65   KQASRSWNIRFDTLIKSYGFEQNVDEPCVY-KRIIKSTVAFSVLYVDDILLIRNDIGHLT 124
            KQA R W ++FD+ +KS  + +   +PCVY KR  ++     +LYVDD+L++  D G + 
Sbjct: 964  KQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIA 1023

Query: 125  DIKKWLATQFQMKDLRNAQYVLGIQIVR 152
             +K  L+  F MKDL  AQ +LG++IVR
Sbjct: 1024 KLKGDLSKSFDMKDLGPAQQILGMKIVR 1051

[Close]

BLAST of Cmc02g0050121 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-21
Identity = 56/147 (38.10%), Postives = 88/147 (59.86%), Query Frame = 0


Query: 6    RILLSIATFYDYEIWQMDVKTAFLNENLEESIYMVQPEGFIQKGQEQKICKLQKSIYGLK 65
            R +LS+   Y+ ++ QMDVKTAFLN  L+E IYM  P+G         +CKL K+IYGLK
Sbjct: 985  RFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI--SCNSDNVCKLNKAIYGLK 1044

Query: 66   QASRSWNIRFDTLIKSYGFEQNVDEPCVY---KRIIKSTVAFSVLYVDDILLIRNDIGHL 125
            QA+R W   F+  +K   F  +  + C+Y   K  I   + + +LYVDD+++   D+  +
Sbjct: 1045 QAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENI-YVLLYVDDVVIATGDMTRM 1104

Query: 126  TDIKKWLATQFQMKDLRNAQYVLGIQI 150
             + K++L  +F+M DL   ++ +GI+I
Sbjct: 1105 NNFKRYLMEKFRMTDLNEIKHFIGIRI 1128

[Close]

BLAST of Cmc02g0050121 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-21
Identity = 54/147 (36.73%), Postives = 84/147 (57.14%), Query Frame = 0


Query: 5    IRILLSIATFYDYEIWQMDVKTAFLNENLEESIYMVQPEGFIQKGQEQKICKLQKSIYGL 64
            IRI+L +A    + I Q+DV  AFL   L + +YM QP GFI K +   +CKL+K++YGL
Sbjct: 1047 IRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGL 1106

Query: 65   KQASRSWNIRFDTLIKSYGFEQNVDEPCVYKRIIKSTVAFSVLYVDDILLIRNDIGHLTD 124
            KQA R+W +     + + GF  +V +  ++      ++ + ++YVDDIL+  ND   L +
Sbjct: 1107 KQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHN 1166

Query: 125  IKKWLATQFQMKDLRNAQYVLGIQIVR 152
                L+ +F +KD     Y LGI+  R
Sbjct: 1167 TLDNLSQRFSVKDHEELHYFLGIEAKR 1193

[Close]

BLAST of Cmc02g0050121 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.6e-21
Identity = 52/147 (35.37%), Postives = 85/147 (57.82%), Query Frame = 0


Query: 5    IRILLSIATFYDYEIWQMDVKTAFLNENLEESIYMVQPEGFIQKGQEQKICKLQKSIYGL 64
            IRI+L +A    + I Q+DV  AFL   L + +YM QP GF+ K +   +C+L+K+IYGL
Sbjct: 1030 IRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGL 1089

Query: 65   KQASRSWNIRFDTLIKSYGFEQNVDEPCVYKRIIKSTVAFSVLYVDDILLIRNDIGHLTD 124
            KQA R+W +   T + + GF  ++ +  ++      ++ + ++YVDDIL+  ND   L  
Sbjct: 1090 KQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKH 1149

Query: 125  IKKWLATQFQMKDLRNAQYVLGIQIVR 152
                L+ +F +K+  +  Y LGI+  R
Sbjct: 1150 TLDALSQRFSVKEHEDLHYFLGIEAKR 1176

[Close]

BLAST of Cmc02g0050121 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-14
Identity = 44/128 (34.38%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 22  MDVKTAFLNENLEESIYMVQPEGFIQKGQEQKICKLQKSIYGLKQASRSWNIRFDTLIKS 81
           MDV TAFLN  ++E IY+ QP GF+ +     + +L   +YGLKQA   WN   +  +K 
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 82  YGFEQNVDEPCVYKRIIKSTVAFSVLYVDDILLIRNDIGHLTDIKKWLATQFQMKDLRNA 141
            GF ++  E  +Y R       +  +YVDD+L+          +K+ L   + MKDL   
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 142 QYVLGIQI 150
              LG+ I
Sbjct: 121 DKFLGLNI 128

[Close]

BLAST of Cmc02g0050121 vs. ExPASy TrEMBL
Match: A0A5A7TTA2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001350 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 7.1e-70
Identity = 136/152 (89.47%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MLKLIRILLSIATFYDYEIWQMDVKTAFLNENLEESIYMVQPEGFIQKGQEQKICKLQKS 60
           M+K IRILLSIATFYDYEIWQMDVKTAFLN NLEESIYMVQPEGFIQKGQEQK+CKLQKS
Sbjct: 224 MIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKS 283

Query: 61  IYGLKQASRSWNIRFDTLIKSYGFEQNVDEPCVYKRIIKSTVAFSVLYVDDILLIRNDIG 120
           IYGLKQASRSWNIRFDT IKSYGFEQNVDEPCVYKRII STVAF VLYVDDILLI N++ 
Sbjct: 284 IYGLKQASRSWNIRFDTGIKSYGFEQNVDEPCVYKRIINSTVAFLVLYVDDILLIGNEVD 343

Query: 121 HLTDIKKWLATQFQMKDLRNAQYVLGIQIVRN 153
           HLTDIK+WL TQFQMKDL +AQYVLGIQIV+N
Sbjct: 344 HLTDIKEWLDTQFQMKDLGSAQYVLGIQIVQN 375

[Close]

BLAST of Cmc02g0050121 vs. ExPASy TrEMBL
Match: A0A5D3CDT9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G001020 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.3e-68
Identity = 131/152 (86.18%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 1   MLKLIRILLSIATFYDYEIWQMDVKTAFLNENLEESIYMVQPEGFIQKGQEQKICKLQKS 60
           MLK IRILLSIATFYDYEIWQ+DVKTAFLN NLEESIYM QPEGFI+KGQEQKICK QKS
Sbjct: 1   MLKSIRILLSIATFYDYEIWQIDVKTAFLNGNLEESIYMAQPEGFIKKGQEQKICKFQKS 60

Query: 61  IYGLKQASRSWNIRFDTLIKSYGFEQNVDEPCVYKRIIKSTVAFSVLYVDDILLIRNDIG 120
           IYGLKQASRSWNIRFDT IKSYGFEQNVD+PCVYK+++ S VAF VLYVDDILL+ ND+G
Sbjct: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDKPCVYKKVVNSIVAFLVLYVDDILLVGNDVG 120

Query: 121 HLTDIKKWLATQFQMKDLRNAQYVLGIQIVRN 153
           +LTDIKKWLATQFQMKD  +AQYVLGIQIVRN
Sbjct: 121 YLTDIKKWLATQFQMKDFGDAQYVLGIQIVRN 152

[Close]

BLAST of Cmc02g0050121 vs. ExPASy TrEMBL
Match: A0A5D3BX45 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00740 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.3e-68
Identity = 135/152 (88.82%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MLKLIRILLSIATFYDYEIWQMDVKTAFLNENLEESIYMVQPEGFIQKGQEQKICKLQKS 60
           M+K IRILLSIATFYDYEIWQMDVKT FLN NLEESIYMVQPE FIQKGQEQKICKLQKS
Sbjct: 318 MIKSIRILLSIATFYDYEIWQMDVKTTFLNANLEESIYMVQPERFIQKGQEQKICKLQKS 377

Query: 61  IYGLKQASRSWNIRFDTLIKSYGFEQNVDEPCVYKRIIKSTVAFSVLYVDDILLIRNDIG 120
           IYGLKQASRS NIRFDT IKSYG EQNVDEPCVYKRI+ STVAF VLYVDDILLI ND+G
Sbjct: 378 IYGLKQASRSCNIRFDTAIKSYGLEQNVDEPCVYKRIMNSTVAFLVLYVDDILLIGNDVG 437

Query: 121 HLTDIKKWLATQFQMKDLRNAQYVLGIQIVRN 153
           HL DIKKWLA QFQMKDL NAQYVLG+QIVRN
Sbjct: 438 HLADIKKWLAMQFQMKDLGNAQYVLGVQIVRN 469

[Close]

BLAST of Cmc02g0050121 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.6e-67
Identity = 129/152 (84.87%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1    MLKLIRILLSIATFYDYEIWQMDVKTAFLNENLEESIYMVQPEGFIQKGQEQKICKLQKS 60
            MLK IRILLSIATFY+YEIWQMDVKTAFLN NLEESIYMVQPEGFI + QEQK+CKLQKS
Sbjct: 894  MLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKLQKS 953

Query: 61   IYGLKQASRSWNIRFDTLIKSYGFEQNVDEPCVYKRIIKSTVAFSVLYVDDILLIRNDIG 120
            IYGLKQASRSWNIRFDT IKSYGFEQNVDEPCVYK+I+ S VAF +LYVDDILLI ND+ 
Sbjct: 954  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVDDILLIGNDVE 1013

Query: 121  HLTDIKKWLATQFQMKDLRNAQYVLGIQIVRN 153
            +LTD+KKWL TQFQMKDL  AQY+LGIQIVRN
Sbjct: 1014 YLTDVKKWLNTQFQMKDLGEAQYILGIQIVRN 1045

[Close]

BLAST of Cmc02g0050121 vs. ExPASy TrEMBL
Match: A0A5A7USZ2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006070 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 8.1e-66
Identity = 126/152 (82.89%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 1   MLKLIRILLSIATFYDYEIWQMDVKTAFLNENLEESIYMVQPEGFIQKGQEQKICKLQKS 60
           MLK IRILLSIATFYDYEIWQMDVKTAFLN+NLEESI+M QPEGFI +GQEQK+CKL +S
Sbjct: 642 MLKSIRILLSIATFYDYEIWQMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRS 701

Query: 61  IYGLKQASRSWNIRFDTLIKSYGFEQNVDEPCVYKRIIKSTVAFSVLYVDDILLIRNDIG 120
           IYGLKQASRSWNIRFDT IKSYGF+QNVDEPCVYK+I K  VAF VLYVDDILLI ND+G
Sbjct: 702 IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 761

Query: 121 HLTDIKKWLATQFQMKDLRNAQYVLGIQIVRN 153
           +LTD+K WLA QFQMKDL  AQYVLGIQI+R+
Sbjct: 762 YLTDVKAWLAAQFQMKDLEEAQYVLGIQIIRD 793

[Close]

BLAST of Cmc02g0050121 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 107.5 bits (267), Expect = 9.9e-24
Identity = 52/155 (33.55%), Postives = 95/155 (61.29%), Query Frame = 0


Query: 2   LKLIRILLSIATFYDYEIWQMDVKTAFLNENLEESIYMVQPEGFIQKGQE----QKICKL 61
           L  ++++L+I+  Y++ + Q+D+  AFLN +L+E IYM  P G+  +  +      +C L
Sbjct: 173 LTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYL 232

Query: 62  QKSIYGLKQASRSWNIRFDTLIKSYGFEQNVDEPCVYKRIIKSTVAFSVLYVDDILLIRN 121
           +KSIYGLKQASR W ++F   +  +GF Q+  +   + +I  +     ++YVDDI++  N
Sbjct: 233 KKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSN 292

Query: 122 DIGHLTDIKKWLATQFQMKDLRNAQYVLGIQIVRN 153
           +   + ++K  L + F+++DL   +Y LG++I R+
Sbjct: 293 NDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARS 327

The following BLAST results are available for this feature:

BLAST of Cmc02g0050121 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045356.1	1.5e-69	89.47	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK03644.1	2.8e-68	88.82	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK09500.1	2.8e-68	86.18	gag/pol protein [Cucumis melo var. makuwa]	[more]
ADJ18449.1	1.2e-66	84.87	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0058278.1	1.7e-65	82.89	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc02g0050121 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.7e-33	48.65	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.2e-21	38.10	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	1.5e-21	36.73	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.6e-21	35.37	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P25600	1.8e-14	34.38	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc02g0050121 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TTA2	7.1e-70	89.47	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G0013...	[more]
A0A5D3CDT9	1.3e-68	86.18	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G0010...	[more]
A0A5D3BX45	1.3e-68	88.82	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G007...	[more]
E2GK51	5.6e-67	84.87	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7USZ2	8.1e-66	82.89	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G0060...	[more]

BLAST of Cmc02g0050121 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	9.9e-24	33.55	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 2..150 e-value: 7.9E-43 score: 146.8
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 5..150
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 16..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0050121.1	Cmc02g0050121.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding