Cmc02g0050111 (gene) Melon (Charmono) v1.1

Overview
NameCmc02g0050111
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
LocationCMiso1.1chr02: 16099618 .. 16100016 (-)
RNA-Seq ExpressionCmc02g0050111
SyntenyCmc02g0050111
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGTGTATGGTTCTAAGGATCTGATCCTTACTAGAAACACTGACTCTGATTTTCAATCTAATAAAAATGCTAGAAAGTCTACGTCGGGATCAGTTTTCACTCTGAATGGAGGAGCAGTAGTATGGAGAAGTATAAAACAATCCTGTATTGCTGACTCCATTATGGAAGCTGAATATGTAGCAGCCTGTGAAGCAGCAAAGGAAAAAGTATGGCTTAAAAAGTTCTTAATAGATTTGGAAATTATTCAAAATATGCATCTGCCAATCACCTTATACTGTGACAACAGTGGTGCAGTTGCAAATTCACGAGAATTAGAAATCATAAATGAGGAAAGCACATTGAACAAAAGTACCATCTTATCCGAGAAATCGTACATCGAGGAGATGTTACAGTAA

mRNA sequence

ATGTTTGTGTATGGTTCTAAGGATCTGATCCTTACTAGAAACACTGACTCTGATTTTCAATCTAATAAAAATGCTAGAAAGTCTACGTCGGGATCAGTTTTCACTCTGAATGGAGGAGCAGTAGTATGGAGAAGTATAAAACAATCCTGTATTGCTGACTCCATTATGGAAGCTGAATATGTAGCAGCCTGTGAAGCAGCAAAGGAAAAAGTATGGCTTAAAAAGTTCTTAATAGATTTGGAAATTATTCAAAATATGCATCTGCCAATCACCTTATACTGTGACAACAGTGGTGCAGTTGCAAATTCACGAGAATTAGAAATCATAAATGAGGAAAGCACATTGAACAAAAGTACCATCTTATCCGAGAAATCGTACATCGAGGAGATGTTACAGTAA

Coding sequence (CDS)

ATGTTTGTGTATGGTTCTAAGGATCTGATCCTTACTAGAAACACTGACTCTGATTTTCAATCTAATAAAAATGCTAGAAAGTCTACGTCGGGATCAGTTTTCACTCTGAATGGAGGAGCAGTAGTATGGAGAAGTATAAAACAATCCTGTATTGCTGACTCCATTATGGAAGCTGAATATGTAGCAGCCTGTGAAGCAGCAAAGGAAAAAGTATGGCTTAAAAAGTTCTTAATAGATTTGGAAATTATTCAAAATATGCATCTGCCAATCACCTTATACTGTGACAACAGTGGTGCAGTTGCAAATTCACGAGAATTAGAAATCATAAATGAGGAAAGCACATTGAACAAAAGTACCATCTTATCCGAGAAATCGTACATCGAGGAGATGTTACAGTAA

Protein sequence

MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAVANSRELEIINEESTLNKSTILSEKSYIEEMLQ
Homology
BLAST of Cmc02g0050111 vs. NCBI nr
Match: KAA0047751.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK02385.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 202.6 bits (514), Expect = 2.1e-48
Identity = 107/131 (81.68%), Postives = 115/131 (87.79%), Query Frame = 0

Query: 1   MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEY 60
           M VYGSKDLILT  T+SDFQ++K+ARKSTSGSVFTLNGGA+VWRSIKQSCIADS MEAEY
Sbjct: 1   MLVYGSKDLILTGYTNSDFQTDKDARKSTSGSVFTLNGGAIVWRSIKQSCIADSTMEAEY 60

Query: 61  VAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAVANSRELEIINEESTLNKSTI 120
           VAACEA K  VWLKKFLIDLE++ NMHLPITLYCDNSGAVANSRE    N ESTLN+STI
Sbjct: 61  VAACEATK-AVWLKKFLIDLEVVPNMHLPITLYCDNSGAVANSREPRSHNVESTLNESTI 120

Query: 121 LSEKSYIEEML 132
           LS KSYI E L
Sbjct: 121 LSGKSYIVETL 130

BLAST of Cmc02g0050111 vs. NCBI nr
Match: KAA0067886.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 187.6 bits (475), Expect = 7.0e-44
Identity = 100/132 (75.76%), Postives = 109/132 (82.58%), Query Frame = 0

Query: 1   MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEY 60
           M VYGSKDLILT  TDSDFQ++K+ARKSTS SVFTLNG AVVWRSIKQS IADS MEAEY
Sbjct: 263 MLVYGSKDLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEY 322

Query: 61  VAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAVANSRELEIINEESTLNKSTI 120
           VAACEAAKE VWLKKFL DLE++ NMHLPITLYC     +     LE+IN ESTLN+STI
Sbjct: 323 VAACEAAKEVVWLKKFLTDLEVVPNMHLPITLYCATVVQLQIQENLEVINMESTLNESTI 382

Query: 121 LSEKSYIEEMLQ 133
           LS KSY+EE LQ
Sbjct: 383 LSGKSYMEETLQ 394

BLAST of Cmc02g0050111 vs. NCBI nr
Match: TYK04328.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 187.6 bits (475), Expect = 7.0e-44
Identity = 100/132 (75.76%), Postives = 109/132 (82.58%), Query Frame = 0

Query: 1   MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEY 60
           M VYGSKDLILT  TDSDFQ++K+ARKSTS SVFTLNG AVVWRSIKQS IADS MEAEY
Sbjct: 263 MLVYGSKDLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEY 322

Query: 61  VAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAVANSRELEIINEESTLNKSTI 120
           VAACEAAKE VWLKKFL DLE++ NMHLPITLYC     +     LE+IN ESTLN+STI
Sbjct: 323 VAACEAAKEVVWLKKFLTDLEVVPNMHLPITLYCATVVQLQIQENLEVINMESTLNESTI 382

Query: 121 LSEKSYIEEMLQ 133
           LS KSY+EE LQ
Sbjct: 383 LSGKSYMEETLQ 394

BLAST of Cmc02g0050111 vs. NCBI nr
Match: KAA0047414.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK14089.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 185.7 bits (470), Expect = 2.7e-43
Identity = 93/105 (88.57%), Postives = 98/105 (93.33%), Query Frame = 0

Query: 1   MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEY 60
           M VYGSKD+ILT  TDSDFQS+K+ARKSTSGS+FTLNGGAVVWRSIKQS IADS MEAEY
Sbjct: 484 MLVYGSKDMILTGYTDSDFQSDKDARKSTSGSIFTLNGGAVVWRSIKQSRIADSTMEAEY 543

Query: 61  VAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAVANSRE 106
           VAACEAAKE VWLKKFLIDLEI+ NMHLPITLYCDNSGAVANSRE
Sbjct: 544 VAACEAAKEAVWLKKFLIDLEIVPNMHLPITLYCDNSGAVANSRE 588

BLAST of Cmc02g0050111 vs. NCBI nr
Match: KAA0054391.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 185.3 bits (469), Expect = 3.5e-43
Identity = 97/132 (73.48%), Postives = 106/132 (80.30%), Query Frame = 0

Query: 1   MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEY 60
           + VYGSKDLILTR TDSDFQ++K+ARKSTS SV TLNG AVVWRSIKQSCI D  MEAEY
Sbjct: 238 LLVYGSKDLILTRYTDSDFQTDKDARKSTSRSVLTLNGEAVVWRSIKQSCIIDYTMEAEY 297

Query: 61  VAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAVANSRELEIINEESTLNKSTI 120
           VAACEAAKE VWLKKFL DLE++ NMHLPITL+CDNSGAV NSREL        + +   
Sbjct: 298 VAACEAAKEAVWLKKFLTDLEVVPNMHLPITLFCDNSGAVENSRELRSNKRGKHIKRKYH 357

Query: 121 LSEKSYIEEMLQ 133
           LS KSYIEE LQ
Sbjct: 358 LSGKSYIEETLQ 369

BLAST of Cmc02g0050111 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.4e-16
Identity = 43/101 (42.57%), Postives = 65/101 (64.36%), Query Frame = 0

Query: 4    YGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAA 63
            +G  D IL   TD+D   + + RKS++G +FT +GGA+ W+S  Q C+A S  EAEY+AA
Sbjct: 1168 FGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAA 1227

Query: 64   CEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAVANSR 105
             E  KE +WLK+FL +L + Q  ++   +YCD+  A+  S+
Sbjct: 1228 TETGKEMIWLKRFLQELGLHQKEYV---VYCDSQSAIDLSK 1265

BLAST of Cmc02g0050111 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-08
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 0

Query: 15  TDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWL 74
           +D+D+  +  +R+STSG +F LNGG V WRS KQ  +A S  E EY+A  EA +E VWL
Sbjct: 75  SDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEAVWL 133

BLAST of Cmc02g0050111 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-07
Identity = 32/87 (36.78%), Postives = 52/87 (59.77%), Query Frame = 0

Query: 16   DSDFQSNKNARKSTSGSVFTL-NGGAVVWRSIKQSCIADSIMEAEYVAACEAAKEKVWLK 75
            DSD+  ++  RKST+G +F + +   + W + +Q+ +A S  EAEY+A  EA +E +WLK
Sbjct: 1253 DSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLK 1312

Query: 76   KFLIDLEIIQNMHLPITLYCDNSGAVA 102
              L  + I   +  PI +Y DN G ++
Sbjct: 1313 FLLTSINI--KLENPIKIYEDNQGCIS 1337

BLAST of Cmc02g0050111 vs. ExPASy TrEMBL
Match: A0A5D3BT79 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00890 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.0e-48
Identity = 107/131 (81.68%), Postives = 115/131 (87.79%), Query Frame = 0

Query: 1   MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEY 60
           M VYGSKDLILT  T+SDFQ++K+ARKSTSGSVFTLNGGA+VWRSIKQSCIADS MEAEY
Sbjct: 1   MLVYGSKDLILTGYTNSDFQTDKDARKSTSGSVFTLNGGAIVWRSIKQSCIADSTMEAEY 60

Query: 61  VAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAVANSRELEIINEESTLNKSTI 120
           VAACEA K  VWLKKFLIDLE++ NMHLPITLYCDNSGAVANSRE    N ESTLN+STI
Sbjct: 61  VAACEATK-AVWLKKFLIDLEVVPNMHLPITLYCDNSGAVANSREPRSHNVESTLNESTI 120

Query: 121 LSEKSYIEEML 132
           LS KSYI E L
Sbjct: 121 LSGKSYIVETL 130

BLAST of Cmc02g0050111 vs. ExPASy TrEMBL
Match: A0A5D3BZ86 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00650 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 3.4e-44
Identity = 100/132 (75.76%), Postives = 109/132 (82.58%), Query Frame = 0

Query: 1   MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEY 60
           M VYGSKDLILT  TDSDFQ++K+ARKSTS SVFTLNG AVVWRSIKQS IADS MEAEY
Sbjct: 263 MLVYGSKDLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEY 322

Query: 61  VAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAVANSRELEIINEESTLNKSTI 120
           VAACEAAKE VWLKKFL DLE++ NMHLPITLYC     +     LE+IN ESTLN+STI
Sbjct: 323 VAACEAAKEVVWLKKFLTDLEVVPNMHLPITLYCATVVQLQIQENLEVINMESTLNESTI 382

Query: 121 LSEKSYIEEMLQ 133
           LS KSY+EE LQ
Sbjct: 383 LSGKSYMEETLQ 394

BLAST of Cmc02g0050111 vs. ExPASy TrEMBL
Match: A0A5A7VMU7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00400 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 3.4e-44
Identity = 100/132 (75.76%), Postives = 109/132 (82.58%), Query Frame = 0

Query: 1   MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEY 60
           M VYGSKDLILT  TDSDFQ++K+ARKSTS SVFTLNG AVVWRSIKQS IADS MEAEY
Sbjct: 263 MLVYGSKDLILTGYTDSDFQTDKDARKSTSRSVFTLNGRAVVWRSIKQSFIADSTMEAEY 322

Query: 61  VAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAVANSRELEIINEESTLNKSTI 120
           VAACEAAKE VWLKKFL DLE++ NMHLPITLYC     +     LE+IN ESTLN+STI
Sbjct: 323 VAACEAAKEVVWLKKFLTDLEVVPNMHLPITLYCATVVQLQIQENLEVINMESTLNESTI 382

Query: 121 LSEKSYIEEMLQ 133
           LS KSY+EE LQ
Sbjct: 383 LSGKSYMEETLQ 394

BLAST of Cmc02g0050111 vs. ExPASy TrEMBL
Match: A0A5D3CV18 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00790 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.3e-43
Identity = 93/105 (88.57%), Postives = 98/105 (93.33%), Query Frame = 0

Query: 1   MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEY 60
           M VYGSKD+ILT  TDSDFQS+K+ARKSTSGS+FTLNGGAVVWRSIKQS IADS MEAEY
Sbjct: 484 MLVYGSKDMILTGYTDSDFQSDKDARKSTSGSIFTLNGGAVVWRSIKQSRIADSTMEAEY 543

Query: 61  VAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAVANSRE 106
           VAACEAAKE VWLKKFLIDLEI+ NMHLPITLYCDNSGAVANSRE
Sbjct: 544 VAACEAAKEAVWLKKFLIDLEIVPNMHLPITLYCDNSGAVANSRE 588

BLAST of Cmc02g0050111 vs. ExPASy TrEMBL
Match: A0A5A7ULH5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G001340 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.7e-43
Identity = 97/132 (73.48%), Postives = 106/132 (80.30%), Query Frame = 0

Query: 1   MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEY 60
           + VYGSKDLILTR TDSDFQ++K+ARKSTS SV TLNG AVVWRSIKQSCI D  MEAEY
Sbjct: 238 LLVYGSKDLILTRYTDSDFQTDKDARKSTSRSVLTLNGEAVVWRSIKQSCIIDYTMEAEY 297

Query: 61  VAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAVANSRELEIINEESTLNKSTI 120
           VAACEAAKE VWLKKFL DLE++ NMHLPITL+CDNSGAV NSREL        + +   
Sbjct: 298 VAACEAAKEAVWLKKFLTDLEVVPNMHLPITLFCDNSGAVENSRELRSNKRGKHIKRKYH 357

Query: 121 LSEKSYIEEMLQ 133
           LS KSYIEE LQ
Sbjct: 358 LSGKSYIEETLQ 369

BLAST of Cmc02g0050111 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 62.0 bits (149), Expect = 4.1e-10
Identity = 34/100 (34.00%), Postives = 55/100 (55.00%), Query Frame = 0

Query: 1   MFVYGSKDLILTRNTDSDFQSNKNARKSTSGSVFTLNGGAVVWRSIKQSCIADSIMEAEY 60
           +F     ++ L   +D+ FQS K+ R+ST+G    L    + W+S KQ  ++ S  EAEY
Sbjct: 432 LFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEY 491

Query: 61  VAACEAAKEKVWLKKFLIDLEIIQNMHLPITLYCDNSGAV 101
            A   A  E +WL +F  +L++   +  P  L+CDN+ A+
Sbjct: 492 RALSFATDEMMWLAQFFRELQL--PLSKPTLLFCDNTAAI 529

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0047751.12.1e-4881.68gag/pol protein [Cucumis melo var. makuwa] >TYK02385.1 gag/pol protein [Cucumis ... [more]
KAA0067886.17.0e-4475.76gag/pol protein [Cucumis melo var. makuwa][more]
TYK04328.17.0e-4475.76gag/pol protein [Cucumis melo var. makuwa][more]
KAA0047414.12.7e-4388.57gag/pol protein [Cucumis melo var. makuwa] >TYK14089.1 gag/pol protein [Cucumis ... [more]
KAA0054391.13.5e-4373.48gag/pol protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P109788.4e-1642.57Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P0CV722.9e-0850.85Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P... [more]
P041461.1e-0736.78Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Match NameE-valueIdentityDescription
A0A5D3BT791.0e-4881.68Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G0089... [more]
A0A5D3BZ863.4e-4475.76Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G0065... [more]
A0A5A7VMU73.4e-4475.76Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G0040... [more]
A0A5D3CV181.3e-4388.57Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G0079... [more]
A0A5A7ULH51.7e-4373.48Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G00134... [more]
Match NameE-valueIdentityDescription
AT4G23160.14.1e-1034.00cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 35..100
NoneNo IPR availablePANTHERPTHR11439:SF273RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOGcoord: 35..100
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 15..104
e-value: 2.91306E-38
score: 124.503

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc02g0050111.1Cmc02g0050111.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0016020 membrane
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding