Cmc02g0046321 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0046321
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr02: 11238809 .. 11239345 (+)
RNA-Seq Expression	Cmc02g0046321
Synteny	Cmc02g0046321

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGATTTGGGAGAGGCACAGTTTGTTCTGGGTATTCAGATCTTTAGAGATCGTAAGAACAAACTGCTAGCTTTGTCTCAAGCATCGTATATTGACAAAATAGTTGTTAAATATTCAATGCAAAACTCCAAGAGAGGCTTACTACCTTTCAGGCATGGAGTTACTTTGTCTAAGGAACAGTGTCCTAAGACACCTCAAGACGTTGAGGAAATGAGACATATCCGCTATGCATCAGCTGTTGGCAGCTTGATGTATGCGATGTTATGTACTAGACCTGACATCTGTTATGCGGTAGGGATAGTCAGTAGATATCAATCTAATCCAGGATTAGCTCATTGGATTGCCGTTAAAACTATCCTCAAGTATCTTAGAAGAACGAGGGACTACATGCTTGTGTATGGTTCTAAGGATTTGATTCTTACAGGATACACAGACTCTGACTTTCAGACTGATAGAGATTCTAGGAAATCTACTTCAGGTTCAGTGTTCACTCTTAACGGAGGAGCTGTAGTTTGGAGAAGTATCAAGCAATGA

mRNA sequence

ATGAAAGATTTGGGAGAGGCACAGTTTGTTCTGGGTATTCAGATCTTTAGAGATCGTAAGAACAAACTGCTAGCTTTGTCTCAAGCATCGTATATTGACAAAATAGTTGTTAAATATTCAATGCAAAACTCCAAGAGAGGCTTACTACCTTTCAGGCATGGAGTTACTTTGTCTAAGGAACAGTGTCCTAAGACACCTCAAGACGTTGAGGAAATGAGACATATCCGCTATGCATCAGCTGTTGGCAGCTTGATGTATGCGATGTTATGTACTAGACCTGACATCTGTTATGCGGTAGGGATAGTCAGTAGATATCAATCTAATCCAGGATTAGCTCATTGGATTGCCGTTAAAACTATCCTCAAGTATCTTAGAAGAACGAGGGACTACATGCTTGTGTATGGTTCTAAGGATTTGATTCTTACAGGATACACAGACTCTGACTTTCAGACTGATAGAGATTCTAGGAAATCTACTTCAGGTTCAGTGTTCACTCTTAACGGAGGAGCTGTAGTTTGGAGAAGTATCAAGCAATGA

Coding sequence (CDS)

ATGAAAGATTTGGGAGAGGCACAGTTTGTTCTGGGTATTCAGATCTTTAGAGATCGTAAGAACAAACTGCTAGCTTTGTCTCAAGCATCGTATATTGACAAAATAGTTGTTAAATATTCAATGCAAAACTCCAAGAGAGGCTTACTACCTTTCAGGCATGGAGTTACTTTGTCTAAGGAACAGTGTCCTAAGACACCTCAAGACGTTGAGGAAATGAGACATATCCGCTATGCATCAGCTGTTGGCAGCTTGATGTATGCGATGTTATGTACTAGACCTGACATCTGTTATGCGGTAGGGATAGTCAGTAGATATCAATCTAATCCAGGATTAGCTCATTGGATTGCCGTTAAAACTATCCTCAAGTATCTTAGAAGAACGAGGGACTACATGCTTGTGTATGGTTCTAAGGATTTGATTCTTACAGGATACACAGACTCTGACTTTCAGACTGATAGAGATTCTAGGAAATCTACTTCAGGTTCAGTGTTCACTCTTAACGGAGGAGCTGTAGTTTGGAGAAGTATCAAGCAATGA

Protein sequence

MKDLGEAQFVLGIQIFRDRKNKLLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQCPKTPQDVEEMRHIRYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWIAVKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ

Homology

[Close]

BLAST of Cmc02g0046321 vs. NCBI nr
Match: TYJ97618.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 352.1 bits (902), Expect = 2.9e-93
Identity = 174/178 (97.75%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 1    MKDLGEAQFVLGIQIFRDRKNKLLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 60
            MKDLGEAQFVLGIQIFRDRKNK+LALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE
Sbjct: 828  MKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 887

Query: 61   QCPKTPQDVEEMRHIRYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWIAVKTI 120
            QCPKTPQDVEEMRHI YASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHW AVKTI
Sbjct: 888  QCPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTI 947

Query: 121  LKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ 179
            LKYLRRTRDY LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ
Sbjct: 948  LKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ 1005

[Close]

BLAST of Cmc02g0046321 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 352.1 bits (902), Expect = 2.9e-93
Identity = 174/178 (97.75%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 1    MKDLGEAQFVLGIQIFRDRKNKLLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 60
            MKDLGEAQFVLGIQIFRDRKNK+LALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE
Sbjct: 1042 MKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 1101

Query: 61   QCPKTPQDVEEMRHIRYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWIAVKTI 120
            QCPKTPQDVEEMRHI YASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHW AVKTI
Sbjct: 1102 QCPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTI 1161

Query: 121  LKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ 179
            LKYLRRTRDY LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ
Sbjct: 1162 LKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ 1219

[Close]

BLAST of Cmc02g0046321 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 352.1 bits (902), Expect = 2.9e-93
Identity = 174/178 (97.75%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 1    MKDLGEAQFVLGIQIFRDRKNKLLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 60
            MKDLGEAQFVLGIQIFRDRKNK+LALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE
Sbjct: 1043 MKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 1102

Query: 61   QCPKTPQDVEEMRHIRYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWIAVKTI 120
            QCPKTPQDVEEMRHI YASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHW AVKTI
Sbjct: 1103 QCPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTI 1162

Query: 121  LKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ 179
            LKYLRRTRDY LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ
Sbjct: 1163 LKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ 1220

[Close]

BLAST of Cmc02g0046321 vs. NCBI nr
Match: TYK19524.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 352.1 bits (902), Expect = 2.9e-93
Identity = 174/178 (97.75%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 1   MKDLGEAQFVLGIQIFRDRKNKLLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 60
           MKDLGEAQFVLGIQIFRDRKNK+LALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE
Sbjct: 1   MKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 60

Query: 61  QCPKTPQDVEEMRHIRYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWIAVKTI 120
           QCPKTPQDVEEMRHI YASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHW AVKTI
Sbjct: 61  QCPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTI 120

Query: 121 LKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ 179
           LKYLRRTRDY LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ
Sbjct: 121 LKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ 178

[Close]

BLAST of Cmc02g0046321 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 352.1 bits (902), Expect = 2.9e-93
Identity = 174/178 (97.75%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 1    MKDLGEAQFVLGIQIFRDRKNKLLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 60
            MKDLGEAQFVLGIQIFRDRKNK+LALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE
Sbjct: 1043 MKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 1102

Query: 61   QCPKTPQDVEEMRHIRYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWIAVKTI 120
            QCPKTPQDVEEMRHI YASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHW AVKTI
Sbjct: 1103 QCPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTI 1162

Query: 121  LKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ 179
            LKYLRRTRDY LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ
Sbjct: 1163 LKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ 1220

[Close]

BLAST of Cmc02g0046321 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.8e-45
Identity = 89/175 (50.86%), Postives = 124/175 (70.86%), Query Frame = 0


Query: 1    MKDLGEAQFVLGIQIFRDRKNKLLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 60
            MKDLG AQ +LG++I R+R ++ L LSQ  YI++++ +++M+N+K    P    + LSK+
Sbjct: 1035 MKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKK 1094

Query: 61   QCPKTPQDVEEMRHIRYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWIAVKTI 120
             CP T ++   M  + Y+SAVGSLMYAM+CTRPDI +AVG+VSR+  NPG  HW AVK I
Sbjct: 1095 MCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWI 1154

Query: 121  LKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRS 176
            L+YLR T    L +G  D IL GYTD+D   D D+RKS++G +FT +GGA+ W+S
Sbjct: 1155 LRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQS 1209

[Close]

BLAST of Cmc02g0046321 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.1e-22
Identity = 52/108 (48.15%), Postives = 76/108 (70.37%), Query Frame = 0


Query: 72  MRHIRYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWIAVKTILKYLRRTRDYM 131
           M+++ Y SAVG++MY M+ TRPD+  AVG++S++ S+P   HW A+K +L+YL+ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 132 LVYGSKDLI-LTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ 179
           L +       L GY+D+D+  D +SR+STSG +F LNGG V WRS KQ
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQ 108

[Close]

BLAST of Cmc02g0046321 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 93.6 bits (231), Expect = 2.4e-18
Identity = 62/186 (33.33%), Postives = 98/186 (52.69%), Query Frame = 0


Query: 1    MKDLGEAQFVLGIQIFRDRKNKLLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVT---L 60
            M DL E +  +GI+I  + +   + LSQ++Y+ KI+ K++M+N      P    +    L
Sbjct: 1114 MTDLNEIKHFIGIRI--EMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELL 1173

Query: 61   SKEQCPKTPQDVEEMRHIRYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWIAV 120
            + ++   TP            S +G LMY MLCTRPD+  AV I+SRY S      W  +
Sbjct: 1174 NSDEDCNTP----------CRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNL 1233

Query: 121  KTILKYLRRTRDYMLVYGSKDLI----LTGYTDSDFQTDRDSRKSTSGSVFTL-NGGAVV 179
            K +L+YL+ T D  L++  K+L     + GY DSD+      RKST+G +F + +   + 
Sbjct: 1234 KRVLRYLKGTIDMKLIF-KKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLIC 1286

[Close]

BLAST of Cmc02g0046321 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.8e-14
Identity = 57/179 (31.84%), Postives = 85/179 (47.49%), Query Frame = 0


Query: 1    MKDLGEAQFVLGIQIFRDRKNKLLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 60
            +K+  +  + LGI+  R  +   L LSQ  Y   ++ + +M  +K    P      L+  
Sbjct: 1160 VKEHEDLHYFLGIEAKRVPQG--LHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLH 1219

Query: 61   QCPKTPQDVEEMRHIRYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWIAVKTI 120
               K P   E      Y   VGSL Y +  TRPD+ YAV  +S+Y   P   HW A+K +
Sbjct: 1220 SGTKLPDPTE------YRGIVGSLQY-LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRV 1279

Query: 121  LKYLRRTRDY-MLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ 179
            L+YL  T D+ + +     L L  Y+D+D+  D D   ST+G +  L    + W S KQ
Sbjct: 1280 LRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQ 1329

[Close]

BLAST of Cmc02g0046321 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 4.0e-13
Identity = 58/178 (32.58%), Postives = 78/178 (43.82%), Query Frame = 0


Query: 1   MKDLGEAQFVLGIQIFRDRKNKLLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 60
           MKDLG+    LG+ I +   N  + LS   YI K   +  +   K    P  +   L + 
Sbjct: 114 MKDLGKVDKFLGLNIHQS-SNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFET 173

Query: 61  QCPKTPQDVEEMRHIRYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWIAVKTI 120
             P   +D+       Y S VG L++     RPDI Y V ++SR+   P   H  + + +
Sbjct: 174 TSPHL-KDITP-----YQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRV 233

Query: 121 LKYLRRTRDYMLVYGS-KDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIK 178
           L+YL  TR   L Y S   L LT Y D+      D   ST G V  L G  V W S K
Sbjct: 234 LRYLYTTRSMCLKYRSGSQLALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKK 284

[Close]

BLAST of Cmc02g0046321 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.4e-93
Identity = 174/178 (97.75%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 1    MKDLGEAQFVLGIQIFRDRKNKLLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 60
            MKDLGEAQFVLGIQIFRDRKNK+LALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE
Sbjct: 1043 MKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 1102

Query: 61   QCPKTPQDVEEMRHIRYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWIAVKTI 120
            QCPKTPQDVEEMRHI YASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHW AVKTI
Sbjct: 1103 QCPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTI 1162

Query: 121  LKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ 179
            LKYLRRTRDY LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ
Sbjct: 1163 LKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ 1220

[Close]

BLAST of Cmc02g0046321 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.4e-93
Identity = 174/178 (97.75%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 1    MKDLGEAQFVLGIQIFRDRKNKLLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 60
            MKDLGEAQFVLGIQIFRDRKNK+LALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE
Sbjct: 1043 MKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 1102

Query: 61   QCPKTPQDVEEMRHIRYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWIAVKTI 120
            QCPKTPQDVEEMRHI YASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHW AVKTI
Sbjct: 1103 QCPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTI 1162

Query: 121  LKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ 179
            LKYLRRTRDY LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ
Sbjct: 1163 LKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ 1220

[Close]

BLAST of Cmc02g0046321 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.4e-93
Identity = 174/178 (97.75%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 1    MKDLGEAQFVLGIQIFRDRKNKLLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 60
            MKDLGEAQFVLGIQIFRDRKNK+LALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE
Sbjct: 1043 MKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 1102

Query: 61   QCPKTPQDVEEMRHIRYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWIAVKTI 120
            QCPKTPQDVEEMRHI YASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHW AVKTI
Sbjct: 1103 QCPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTI 1162

Query: 121  LKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ 179
            LKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVF LNGGAVVWRSIKQ
Sbjct: 1163 LKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFILNGGAVVWRSIKQ 1220

[Close]

BLAST of Cmc02g0046321 vs. ExPASy TrEMBL
Match: A0A5D3CSZ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00320 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.4e-93
Identity = 174/178 (97.75%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 1    MKDLGEAQFVLGIQIFRDRKNKLLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 60
            MKDLGEAQFVLGIQIFRDRKNK+LALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE
Sbjct: 1043 MKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 1102

Query: 61   QCPKTPQDVEEMRHIRYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWIAVKTI 120
            QCPKTPQDVEEMRHI YASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHW AVKTI
Sbjct: 1103 QCPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTI 1162

Query: 121  LKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ 179
            LKYLRRTRDY LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ
Sbjct: 1163 LKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ 1220

[Close]

BLAST of Cmc02g0046321 vs. ExPASy TrEMBL
Match: A0A5D3BHG7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold639G00150 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.4e-93
Identity = 174/178 (97.75%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 1    MKDLGEAQFVLGIQIFRDRKNKLLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 60
            MKDLGEAQFVLGIQIFRDRKNK+LALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE
Sbjct: 828  MKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 887

Query: 61   QCPKTPQDVEEMRHIRYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWIAVKTI 120
            QCPKTPQDVEEMRHI YASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHW AVKTI
Sbjct: 888  QCPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTI 947

Query: 121  LKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ 179
            LKYLRRTRDY LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ
Sbjct: 948  LKYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ 1005

[Close]

BLAST of Cmc02g0046321 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 76.6 bits (187), Expect = 2.2e-14
Identity = 54/179 (30.17%), Postives = 91/179 (50.84%), Query Frame = 0


Query: 1   MKDLGEAQFVLGIQIFRDRKNKLLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKE 60
           ++DLG  ++ LG++I R      + + Q  Y   ++ +  +   K   +P    VT S  
Sbjct: 310 LRDLGPLKYFLGLEIARSAAG--INICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAH 369

Query: 61  QCPKTPQDVEEMRHIRYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWIAVKTI 120
               +  D  + +   Y   +G LMY  + TR DI +AV  +S++   P LAH  AV  I
Sbjct: 370 ----SGGDFVDAK--AYRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKI 429

Query: 121 LKYLRRTRDYMLVYGSK-DLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQ 179
           L Y++ T    L Y S+ ++ L  ++D+ FQ+ +D+R+ST+G    L    + W+S KQ
Sbjct: 430 LHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQ 479

[Close]

BLAST of Cmc02g0046321 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-13
Identity = 58/181 (32.04%), Postives = 90/181 (49.72%), Query Frame = 0


Query: 1   MKDLGEAQFVLGIQIFRDRKNKLLALSQASYIDKIVVKYSMQNSK--RGLLPFRHGVTLS 60
           MKDLG   + LGIQI        L LSQ  Y ++I+    M + K     LP +   ++S
Sbjct: 33  MKDLGPVHYFLGIQIKTHPSG--LFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSVS 92

Query: 61  KEQCPKTPQDVEEMRHIRYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWIAVK 120
             + P  P D        + S VG+L Y  L TRPDI YAV IV +    P LA +  +K
Sbjct: 93  TAKYP-DPSD--------FRSIVGALQYLTL-TRPDISYAVNIVCQRMHEPTLADFDLLK 152

Query: 121 TILKYLRRTRDY-MLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIK 179
            +L+Y++ T  + + ++ +  L +  + DSD+     +R+ST+G    L    + W + +
Sbjct: 153 RVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKR 201

[Close]

BLAST of Cmc02g0046321 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 44.7 bits (104), Expect = 9.2e-05
Identity = 26/72 (36.11%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 91  TRPDICYAVGIVSRYQSNPGLAHWIAVKTILKYLRRTRDYMLVY-GSKDLILTGYTDSDF 150
           TRPD+ +AV  +S++ S    A   AV  +L Y++ T    L Y  + DL L  + DSD+
Sbjct: 6   TRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDW 65

Query: 151 QTDRDSRKSTSG 162
            +  D+R+S +G
Sbjct: 66  ASCPDTRRSVTG 77

The following BLAST results are available for this feature:

BLAST of Cmc02g0046321 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ97618.1	2.9e-93	97.75	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	2.9e-93	97.75	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	2.9e-93	97.75	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK19524.1	2.9e-93	97.75	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	2.9e-93	97.75	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc02g0046321 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.8e-45	50.86	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	2.1e-22	48.15	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P04146	2.4e-18	33.33	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	4.8e-14	31.84	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P25600	4.0e-13	32.58	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc02g0046321 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH8	1.4e-93	97.75	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	1.4e-93	97.75	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7TWB9	1.4e-93	97.75	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]
A0A5D3CSZ6	1.4e-93	97.75	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G0032...	[more]
A0A5D3BHG7	1.4e-93	97.75	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold639G0015...	[more]

BLAST of Cmc02g0046321 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.2e-14	30.17	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.4e-13	32.04	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	9.2e-05	36.11	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 56..162
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 56..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0046321.1	Cmc02g0046321.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding