Cmc02g0041891 (gene) Melon (Charmono) v1.1

Overview
NameCmc02g0041891
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrotransposon protein
LocationCMiso1.1chr02: 3395542 .. 3396192 (-)
RNA-Seq ExpressionCmc02g0041891
SyntenyCmc02g0041891
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATACACGAGTCAGATCTTGTGTGTCGGCAAAGCACGCGGATGGATAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTCGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCGCGTCATACAACGAGAATTTGTACGCTCCGGTGAGACAGTATCGCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAAAGACCTCTTCCGGTAACAAGTAACTGCAATGATCAACGTTGGAAGTGTTTCGAGGTGGGCATCCTACAAGTTCACTATAATTGACCTTTAGGTACATCGCAGTTAATTCATTGTGTTCCTTTGAACCTGCAGAACTGCCTTGGCGCGTTAGACGGGACGTACATAAAGGTGAACGTCCCCGCAGGAGATCGGCCTACTTTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATCTGCAGCAGACTCGCGGATCCTACGTGATGCGATTTCACGAGAAAATGGACTACAAGTGCCAAAGGGTATATCATGTTTATAA

mRNA sequence

ATGATACACGAGTCAGATCTTGTGTGTCGGCAAAGCACGCGGATGGATAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTCGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCGCGTCATACAACGAGAATTTGTACGCTCCGGTGAGACAGTATCGCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAAAGACCTCTTCCGAACTGCCTTGGCGCGTTAGACGGGACGTACATAAAGGTGAACGTCCCCGCAGGAGATCGGCCTACTTTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATCTGCAGCAGACTCGCGGATCCTACGTGATGCGATTTCACGAGAAAATGGACTACAAGTGCCAAAGGGTATATCATGTTTATAA

Coding sequence (CDS)

ATGATACACGAGTCAGATCTTGTGTGTCGGCAAAGCACGCGGATGGATAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTCGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCGCGTCATACAACGAGAATTTGTACGCTCCGGTGAGACAGTATCGCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAAAGACCTCTTCCGAACTGCCTTGGCGCGTTAGACGGGACGTACATAAAGGTGAACGTCCCCGCAGGAGATCGGCCTACTTTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATCTGCAGCAGACTCGCGGATCCTACGTGATGCGATTTCACGAGAAAATGGACTACAAGTGCCAAAGGGTATATCATGTTTATAA

Protein sequence

MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPLPNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGISCL
Homology
[Close]
BLAST of Cmc02g0041891 vs. NCBI nr
Match: KAA0062587.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 343.6 bits (880), Expect = 1.0e-90
Identity = 170/172 (98.84%), Postives = 172/172 (100.00%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPLPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRP+PNCLGALDGTYIKVNVPAGDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFR 145

Query: 121 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 173
           TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS+ILRDAISRENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSQILRDAISRENGLQVPKG 197

[Close]
BLAST of Cmc02g0041891 vs. NCBI nr
Match: KAA0036923.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 342.4 bits (877), Expect = 2.3e-90
Identity = 169/172 (98.26%), Postives = 172/172 (100.00%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPLPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEEL+KRP+PNCLGALDGTYIKVNVPAGDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELMKRPVPNCLGALDGTYIKVNVPAGDRPTFR 145

Query: 121 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 173
           TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAIS+ENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKG 197

[Close]
BLAST of Cmc02g0041891 vs. NCBI nr
Match: KAA0051443.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 341.3 bits (874), Expect = 5.1e-90
Identity = 169/172 (98.26%), Postives = 171/172 (99.42%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MI+ESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIYESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPLPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRP+PNCLGALDGTYIKVNVP GDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPTGDRPTFR 145

Query: 121 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 173
           TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 197

[Close]
BLAST of Cmc02g0041891 vs. NCBI nr
Match: KAA0062150.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 338.6 bits (867), Expect = 3.3e-89
Identity = 168/172 (97.67%), Postives = 171/172 (99.42%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVC QSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCLQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPLPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRP+PNCLGALDGTYIKV+VPAGDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVSVPAGDRPTFR 145

Query: 121 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 173
           TRKGEIAT+VLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG
Sbjct: 146 TRKGEIATDVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 197

[Close]
BLAST of Cmc02g0041891 vs. NCBI nr
Match: KAA0042501.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 338.2 bits (866), Expect = 4.3e-89
Identity = 168/172 (97.67%), Postives = 170/172 (98.84%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPLPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFVRS ETVSR+FNIVLLAVLRLYEELIKRP+PNCLGALDGTYIKVNVPAGDRPTFR
Sbjct: 86  IQREFVRSDETVSRYFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFR 145

Query: 121 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 173
           TRKGEIATNVLGVCDTKGDFVYVL GWEGSAADSRILRDAISRENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLIGWEGSAADSRILRDAISRENGLQVPKG 197

[Close]
BLAST of Cmc02g0041891 vs. ExPASy Swiss-Prot
Match: Q9M2U3 (Protein ALP1-like OS=Arabidopsis thaliana OX=3702 GN=At3g55350 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.6e-04
Identity = 25/68 (36.76%), Postives = 38/68 (55.88%), Query Frame = 0 

Query: 95  LPNCLGALDGTYIKVNVPAGDRPTFRTRKGE--IATNVLGVCDTKGDFVYVLAGWEGSAA 154
           LPNC GA+D T+I +N+PA +        GE   +  +  V D    F+ V+AGW GS  
Sbjct: 180 LPNCCGAIDITHIVMNLPAVEPSNKVWLDGEKNFSMTLQAVVDPDMRFLDVIAGWPGSLN 239

Query: 155 DSRILRDA 161
           D  +L+++
Sbjct: 240 DDVVLKNS 247

[Close]
BLAST of Cmc02g0041891 vs. ExPASy TrEMBL
Match: A0A5A7V6J9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00810 PE=3 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 4.9e-91
Identity = 170/172 (98.84%), Postives = 172/172 (100.00%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPLPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRP+PNCLGALDGTYIKVNVPAGDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFR 145

Query: 121 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 173
           TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS+ILRDAISRENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSQILRDAISRENGLQVPKG 197

[Close]
BLAST of Cmc02g0041891 vs. ExPASy TrEMBL
Match: A0A5A7T1V5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9475G00150 PE=3 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.1e-90
Identity = 169/172 (98.26%), Postives = 172/172 (100.00%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPLPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEEL+KRP+PNCLGALDGTYIKVNVPAGDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELMKRPVPNCLGALDGTYIKVNVPAGDRPTFR 145

Query: 121 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 173
           TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAIS+ENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKG 197

[Close]
BLAST of Cmc02g0041891 vs. ExPASy TrEMBL
Match: A0A5A7U6C1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001970 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.4e-90
Identity = 169/172 (98.26%), Postives = 171/172 (99.42%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MI+ESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIYESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPLPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRP+PNCLGALDGTYIKVNVP GDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPTGDRPTFR 145

Query: 121 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 173
           TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 197

[Close]
BLAST of Cmc02g0041891 vs. ExPASy TrEMBL
Match: A0A5A7V4C6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005200 PE=3 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 1.6e-89
Identity = 168/172 (97.67%), Postives = 171/172 (99.42%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVC QSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCLQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPLPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRP+PNCLGALDGTYIKV+VPAGDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVSVPAGDRPTFR 145

Query: 121 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 173
           TRKGEIAT+VLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG
Sbjct: 146 TRKGEIATDVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 197

[Close]
BLAST of Cmc02g0041891 vs. ExPASy TrEMBL
Match: A0A5A7TLQ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00550 PE=3 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.1e-89
Identity = 168/172 (97.67%), Postives = 170/172 (98.84%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPLPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFVRS ETVSR+FNIVLLAVLRLYEELIKRP+PNCLGALDGTYIKVNVPAGDRPTFR
Sbjct: 86  IQREFVRSDETVSRYFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFR 145

Query: 121 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 173
           TRKGEIATNVLGVCDTKGDFVYVL GWEGSAADSRILRDAISRENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLIGWEGSAADSRILRDAISRENGLQVPKG 197

[Close]
BLAST of Cmc02g0041891 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 121.3 bits (303), Expect = 7.7e-28
Identity = 65/176 (36.93%), Postives = 98/176 (55.68%), Query Frame = 0 

Query: 9   CRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS 68
           C ++ RMD+  F  LC LL+    L  T  + +E  +A+FL ++ H+++ R +Q  F  S
Sbjct: 42  CFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYS 101

Query: 69  GETVSRHFNIVLLAVLRLYEELIKRP------------LPNCLGALDGTYIKVNVPAGDR 128
           GET+SRHFN VL AV+ + ++  +                +C+G +D  +I V V   ++
Sbjct: 102 GETISRHFNNVLNAVIAISKDFFQPNSNSDTLENDDPYFKDCVGVVDSFHIPVMVGVDEQ 161

Query: 129 PTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 173
             FR   G +  NVL        F YVLAGWEGSA+D ++L  A++R N LQVP+G
Sbjct: 162 GPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQVLNAALTRRNKLQVPQG 217

[Close]
BLAST of Cmc02g0041891 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 81.6 bits (200), Expect = 6.7e-16
Identity = 55/190 (28.95%), Postives = 85/190 (44.74%), Query Frame = 0 

Query: 2   IHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVI 61
           + +    C Q  RM    F  LC++L+    L  T  + +EE VAMFL +  H+   R +
Sbjct: 59  LQQDAAACLQLLRMSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDV 118

Query: 62  QREFVRSGETVSRHFNIVLLAVLRLYEELIKRP-------LPNCL--------------G 121
              F R+ ETV R F  VL A   L  + I+ P       +P  L              G
Sbjct: 119 GLRFGRNQETVQRKFREVLTATELLACDYIRTPTRQELYRIPERLQVDQRYWPYFSGFVG 178

Query: 122 ALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDA 171
           A+DGT++ V V    +  +  R    + N++ +CD K  F Y+  G  GS  D+ +L+ A
Sbjct: 179 AMDGTHVCVKVKPDLQGMYWNRHDNASLNIMAICDLKMLFTYIWNGAPGSCYDTAVLQIA 238

[Close]
BLAST of Cmc02g0041891 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 81.6 bits (200), Expect = 6.7e-16
Identity = 37/76 (48.68%), Postives = 54/76 (71.05%), Query Frame = 0 

Query: 97  NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRI 156
           +C+GA+D T+I   V     P+FR RKG+I+ N+L  C+   +F+YVL+GWEGSA DS++
Sbjct: 24  DCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHDSKV 83

Query: 157 LRDAISR-ENGLQVPK 172
           L DA++R  N L VP+
Sbjct: 84  LNDALTRNSNRLPVPE 99

[Close]
BLAST of Cmc02g0041891 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-14
Identity = 53/169 (31.36%), Postives = 79/169 (46.75%), Query Frame = 0 

Query: 2   IHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVI 61
           I+ +++ C+   RM    F  LC +L    GL S+  + ++E VA+FL + A +   R I
Sbjct: 17  IYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDI 76

Query: 62  QREFVRSGETVSRHFNIVLLAVLRLYEELIKRPLPNCLGALDGTYIKVNVPAGDRPTFRT 121
              F  + ET+ R F+ VL A+ RL  E I+   P  +  L     ++       P    
Sbjct: 77  ALRFGHAQETIWRKFHDVLKAMERLAVEYIR---PRKVEELRAISNRLQDDTRYWPFLMD 136

Query: 122 RKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVP 171
             G  + NVL +CD    F Y   G  GS  D+R+L  AIS +    VP
Sbjct: 137 LLGIASFNVLAICDLDMLFTYCFVGMAGSTHDARVLSAAISDDPLFHVP 182

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BLAST of Cmc02g0041891 vs. TAIR 10
Match: AT3G55350.1 (PIF / Ping-Pong family of plant transposases )

HSP 1 Score: 47.0 bits (110), Expect = 1.8e-05
Identity = 25/68 (36.76%), Postives = 38/68 (55.88%), Query Frame = 0 

Query: 95  LPNCLGALDGTYIKVNVPAGDRPTFRTRKGE--IATNVLGVCDTKGDFVYVLAGWEGSAA 154
           LPNC GA+D T+I +N+PA +        GE   +  +  V D    F+ V+AGW GS  
Sbjct: 180 LPNCCGAIDITHIVMNLPAVEPSNKVWLDGEKNFSMTLQAVVDPDMRFLDVIAGWPGSLN 239

Query: 155 DSRILRDA 161
           D  +L+++
Sbjct: 240 DDVVLKNS 247

The following BLAST results are available for this feature:
BLAST of Cmc02g0041891 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062587.11.0e-9098.84retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0036923.12.3e-9098.26retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0051443.15.1e-9098.26retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0062150.13.3e-8997.67retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0042501.14.3e-8997.67retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Cmc02g0041891 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M2U32.6e-0436.76Protein ALP1-like OS=Arabidopsis thaliana OX=3702 GN=At3g55350 PE=2 SV=1[more]
BLAST of Cmc02g0041891 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V6J94.9e-9198.84Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7T1V51.1e-9098.26Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U6C12.4e-9098.26Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7V4C61.6e-8997.67Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TLQ02.1e-8997.67Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Cmc02g0041891 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G41980.17.7e-2836.93CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... [more]
AT1G43722.16.7e-1628.95unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G28950.16.7e-1648.68unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G28730.11.3e-1431.36unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G55350.11.8e-0536.76PIF / Ping-Pong family of plant transposases [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027806Harbinger transposase-derived nuclease domainPFAMPF13359DDE_Tnp_4coord: 102..159
e-value: 1.0E-7
score: 31.8
NoneNo IPR availablePANTHERPTHR22930:SF216OS11G0577650 PROTEINcoord: 1..168
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 1..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc02g0041891.1Cmc02g0041891.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0046872 metal ion binding