Cmc02g0038141 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0038141
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	SOSS complex subunit B-like protein
Location	CMiso1.1chr02: 673004 .. 675347 (+)
RNA-Seq Expression	Cmc02g0038141
Synteny	Cmc02g0038141

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCCCAACTTTACAGGTTTCTATAATTAAAACCATACATTCCCTTTTTTACTTTTCTTCTTGTTCCTTCAAAGTAAAACAAACATTGGATATAGACAAACATCTTCAACAAAAATCAATTTTGTTTATTCTACTTCTCTATCAAATTTGAATCAAAACGATTACTCCAACATGTTGTTTTGAGAAAACGACACAATCGACCCAAACGTTGGTATGAGATGATTGCGAGATAGATGAAAAAGGAAAATGATACAAATGTGAATTTGTATGGGTGAGTAAGAAAAGATTCTAGAAATCTACAGACACCAAATATCGAAGATTCCAAATGCACAATTTCATCGTCGGAATCAAATGGTGGAGGAATGGAAGAAATTAAAGGGTAGGATATCCTATCACCTTTTGGAGTTCCAATAAGTCTAAGGTTAGAACAGTAAACCCTAAATCCTAAATCTCTTATAACTGCTTCCATTTTGTCTTACTTTTTGCGATTTTCCCTTTTTTGTTTTTTTACAAGTTAAACCTCTAGTTATCTTCCCCGTCGGATTTGAGCTTCAGTTCGTATAAATCTCCACTCAATTTTTACATTTGTCCTCTTCGGGCGAGTAAGATTCAAGGTTTAGCTCTACTTTTTTCTTCCAGATCCATTTATTTTGAAAAAGTTTTATGATCATCAGTATTAACTTCCTTGTGTTTTCTAATCAAAGTTAGAATTGAATCAACCATTCACTTTTTAACCTTTCTTTGCCTGTTGGGTTTTAGTTATATTGTGATATTGTGTATGGAAACAGCTAAAGTTTTTCAATGGAAAACTTGATGATTGTGTAATATTGTTATATGTGTTTCTGTCTGTTTTTTGCTTCGTTGTAATGTTGCCTGATTCAGTGAGAACAACAGAGGCACTGAAACTTAGAGACTATTACACATTAGAGGTCATGGACAAAAATCAACATGATCTCCTTAGGAAATCTGATCACTTCCCACCTCCTCAAGGTTGCTTTCTCCATTTCCATTTTGTCTGGGAAAAGTTCCATCAAAGTTAGGAATTAGAAGCGTCCTCCACCTGTTTGTAGAAATGACTGAGTGAAGTTTTGTGTGTTTGCTTTATTTTTAGACTGTTTTATACGATCATCCTTCCAATTATGTTTCTGAAAATTCAAAACTATATGTATAATCCTATCAAATCATTTACGAATTAGTTGAAATTTGTCTATGAATTCAAATGTTTATATACGTAGACAAAGGACTCGATTGATAACCATTTGAGTTTTGAAAGTTGGTCTTGATTTCTTACCTTTGATCTTTTCCATAATTTTCATTTTCACTGTTGAAACATTTGAATTTCCTGCTAAATTTCAACTACAAAAGCTATTTTTTAATATTGTGGCCTGATTTTTTAAGTTGTTTTTAGAAGTAGTTGACAAAATAAATAAATGTGTGAAAGTACTGTATACAACCTTTACTTTAAAAAACCAAATAGTTCAAACGAGTCCTAAACTTTTATTAGAAAAAAATCATATTGTATATTGTGATATAATTTTTCACTTCATGGATCAATGGCCCGTATGTTGAGATCACATAAGACATTTGCAAATTGCATCACCAAGTCCAGTTTTTTATTGAATACTATTTGGTTGTTTGTTTGAATGAGTTGAAATAGGCAGATAAATGATGATGATACCTCTCAAGGATTTGGTGCCAGCAGCCCAGAACAAAGTGAATACACAATTCATAGTTTTGGAGAAAGGCATGACAACGATGGAAGGACAAAACAAAGTATGCCAATCACTGGTGGCCGACGAGACAGCAGCGGTTCACTTCCAGCTATGGGGAGATGAGTGCGATGTCGTTGAGCCGAGTGACATTATACGGTTAACGAATGGGATATTTTCGTACAGTCGAAACAATAATCTGGTGCTGAGGGCAGGGAAGAGAGGGAAGATTGAGAAGGTAGGAGAGTTCAAGATGGTGTTTGTAGAGACACCAAATATGAGTGAGATCCACTGGGTTCCAGACACCATTAACTCCAACAAGTATGTGAAAGAATCTGTTTTATCTCCTTATTCTCGCATCTTTCCTCCCATTCGTTGATAGTCTTATGGTGGTTGTAGACCAAACTTGAGAAAGAAAGGTCAAGGAATTAGTAGATTTTTGAAGATGCATTTCGCATTATGTTTGTAATGGTGTGGAAGAAGTGAAAATTGGATAGATTTAATATGCGGATTAAATTTATTTTTTAAATTTTCTAATTGAATTGAAACCATAAAATTAGATAATACTTTATGTGTACAAATTTGAAAGTTAAATTTAAATTTATAGTTTATTCAATAAGAATGATTTATACCTT

mRNA sequence

TGGCCCAACTTTACAGGTTTCTATAATTAAAACCATACATTCCCTTTTTTACTTTTCTTCTTGTTCCTTCAAAGTAAAACAAACATTGGATATAGACAAACATCTTCAACAAAAATCAATTTTGTTTATTCTACTTCTCTATCAAATTTGAATCAAAACGATTACTCCAACATGTTGTTTTGAGAAAACGACACAATCGACCCAAACGTTGGTATGAGATGATTGCGAGATAGATGAAAAAGGAAAATGATACAAATGTGAATTTGTATGGGTGAGTAAGAAAAGATTCTAGAAATCTACAGACACCAAATATCGAAGATTCCAAATGCACAATTTCATCGTCGGAATCAAATGGTGGAGGAATGGAAGAAATTAAAGGGTAGGATATCCTATCACCTTTTGGAGTTCCAATAAGTCTAAGTTAAACCTCTAGTTATCTTCCCCGTCGGATTTGAGCTTCAGTTCGTATAAATCTCCACTCAATTTTTACATTTGTCCTCTTCGGGCGAGTAAGATTCAAGATAAATGATGATGATACCTCTCAAGGATTTGGTGCCAGCAGCCCAGAACAAAGTGAATACACAATTCATAGTTTTGGAGAAAGGCATGACAACGATGGAAGGACAAAACAAAGTATGCCAATCACTGGTGGCCGACGAGACAGCAGCGGTTCACTTCCAGCTATGGGGAGATGAGTGCGATGTCGTTGAGCCGAGTGACATTATACGGTTAACGAATGGGATATTTTCGTACAGTCGAAACAATAATCTGGTGCTGAGGGCAGGGAAGAGAGGGAAGATTGAGAAGGTAGGAGAGTTCAAGATGGTGTTTGTAGAGACACCAAATATGAGTGAGATCCACTGGGTTCCAGACACCATTAACTCCAACAAGTATGTGAAAGAATCTGTTTTATCTCCTTATTCTCGCATCTTTCCTCCCATTCGTTGATAGTCTTATGGTGGTTGTAGACCAAACTTGAGAAAGAAAGGTCAAGGAATTAGTAGATTTTTGAAGATGCATTTCGCATTATGTTTGTAATGGTGTGGAAGAAGTGAAAATTGGATAGATTTAATATGCGGATTAAATTTATTTTTTAAATTTTCTAATTGAATTGAAACCATAAAATTAGATAATACTTTATGTGTACAAATTTGAAAGTTAAATTTAAATTTATAGTTTATTCAATAAGAATGATTTATACCTT

Coding sequence (CDS)

ATGATGATGATACCTCTCAAGGATTTGGTGCCAGCAGCCCAGAACAAAGTGAATACACAATTCATAGTTTTGGAGAAAGGCATGACAACGATGGAAGGACAAAACAAAGTATGCCAATCACTGGTGGCCGACGAGACAGCAGCGGTTCACTTCCAGCTATGGGGAGATGAGTGCGATGTCGTTGAGCCGAGTGACATTATACGGTTAACGAATGGGATATTTTCGTACAGTCGAAACAATAATCTGGTGCTGAGGGCAGGGAAGAGAGGGAAGATTGAGAAGGTAGGAGAGTTCAAGATGGTGTTTGTAGAGACACCAAATATGAGTGAGATCCACTGGGTTCCAGACACCATTAACTCCAACAAGTATGTGAAAGAATCTGTTTTATCTCCTTATTCTCGCATCTTTCCTCCCATTCGTTGA

Protein sequence

MMMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR

Homology

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BLAST of Cmc02g0038141 vs. NCBI nr
Match: XP_008450623.1 (PREDICTED: SOSS complex subunit B homolog [Cucumis melo] >XP_008450625.1 PREDICTED: SOSS complex subunit B homolog [Cucumis melo] >KAA0050905.1 SOSS complex subunit B-like protein [Cucumis melo var. makuwa] >TYK10256.1 SOSS complex subunit B-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 285.4 bits (729), Expect = 2.6e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MMMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDV 60
           MMMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDV
Sbjct: 1   MMMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDV 60

Query: 61  VEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINS 120
           VEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINS
Sbjct: 61  VEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINS 120

Query: 121 NKYVKESVLSPYSRIFPPIR 141
           NKYVKESVLSPYSRIFPPIR
Sbjct: 121 NKYVKESVLSPYSRIFPPIR 140

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BLAST of Cmc02g0038141 vs. NCBI nr
Match: XP_004135609.1 (SOSS complex subunit B homolog [Cucumis sativus] >KGN66060.1 hypothetical protein Csa_007591 [Cucumis sativus])

HSP 1 Score: 283.5 bits (724), Expect = 1.0e-72
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 2   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVV 61
           MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVV
Sbjct: 1   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVV 60

Query: 62  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 121
           EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN
Sbjct: 61  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 120

Query: 122 KYVKESVLSPYSRIFPPIR 141
           KYVKESVLSPYSRIFPPIR
Sbjct: 121 KYVKESVLSPYSRIFPPIR 139

[Close]

BLAST of Cmc02g0038141 vs. NCBI nr
Match: XP_038878334.1 (SOSS complex subunit B homolog [Benincasa hispida] >XP_038878335.1 SOSS complex subunit B homolog [Benincasa hispida] >XP_038878336.1 SOSS complex subunit B homolog [Benincasa hispida] >XP_038878337.1 SOSS complex subunit B homolog [Benincasa hispida])

HSP 1 Score: 272.7 bits (696), Expect = 1.8e-69
Identity = 134/139 (96.40%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 2   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVV 61
           MMI LKDLVPAAQN VNTQFIVLEKGMT MEGQNK CQSLVADETAAVHFQLWGDECDVV
Sbjct: 1   MMIALKDLVPAAQNNVNTQFIVLEKGMTIMEGQNKACQSLVADETAAVHFQLWGDECDVV 60

Query: 62  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 121
           EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDT NSN
Sbjct: 61  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSN 120

Query: 122 KYVKESVLSPYSRIFPPIR 141
           KYVKESVLSPYSRIFPPIR
Sbjct: 121 KYVKESVLSPYSRIFPPIR 139

[Close]

BLAST of Cmc02g0038141 vs. NCBI nr
Match: XP_022961520.1 (SOSS complex subunit B homolog [Cucurbita moschata] >XP_022961521.1 SOSS complex subunit B homolog [Cucurbita moschata] >KAG6590445.1 SOSS complex subunit B-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 266.5 bits (680), Expect = 1.3e-67
Identity = 130/139 (93.53%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 2   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVV 61
           MMI LKDLVPAAQN VNTQFIVLEKGMTTMEGQNK CQSLVADETAAVHFQLWG+ECDVV
Sbjct: 1   MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVV 60

Query: 62  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 121
           EPSDI+RLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MVFVETPNMSEIHWVPDT NS 
Sbjct: 61  EPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNSK 120

Query: 122 KYVKESVLSPYSRIFPPIR 141
           KYVKESVLSPYSRIFPPIR
Sbjct: 121 KYVKESVLSPYSRIFPPIR 139

[Close]

BLAST of Cmc02g0038141 vs. NCBI nr
Match: XP_023515959.1 (SOSS complex subunit B homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.4 bits (677), Expect = 2.8e-67
Identity = 128/139 (92.09%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 2   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVV 61
           MMI LKDLVPAAQN VNTQFIVL+KGMTT+EGQNK CQSLVADETAAVHFQLWG+ECDVV
Sbjct: 1   MMISLKDLVPAAQNNVNTQFIVLDKGMTTIEGQNKTCQSLVADETAAVHFQLWGEECDVV 60

Query: 62  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 121
           EPSDI+RLTNGIFSYSRNNNLVLRAGKRGK+EKVGEF MVFVETPNMSEIHWVPDT NS 
Sbjct: 61  EPSDILRLTNGIFSYSRNNNLVLRAGKRGKVEKVGEFNMVFVETPNMSEIHWVPDTTNSK 120

Query: 122 KYVKESVLSPYSRIFPPIR 141
           KYVKESVLSPYSRIFPPIR
Sbjct: 121 KYVKESVLSPYSRIFPPIR 139

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BLAST of Cmc02g0038141 vs. ExPASy Swiss-Prot
Match: Q54X41 (SOSS complex subunit B homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0279223 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.7e-14
Identity = 45/113 (39.82%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 1   MMMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDV 60
           M +I + ++ P ++N +N  FIVL+KG  T + +  + Q LVAD TA+++  +W    + 
Sbjct: 1   MNLIKVNEIKPYSKN-INCVFIVLDKGPPTKKKEGTIYQVLVADSTASINMTVWDALGEQ 60

Query: 61  VEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHW 114
           ++P DI+RL  G +S      L L  GK G IEK+GEF   FVE PN+S   W
Sbjct: 61  IQPGDILRLKGG-YSNIYIELLNLYVGKTGIIEKIGEFTFPFVEAPNLSSTLW 111

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BLAST of Cmc02g0038141 vs. ExPASy Swiss-Prot
Match: Q3SWT1 (SOSS complex subunit B1 OS=Rattus norvegicus OX=10116 GN=Nabp2 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-13
Identity = 52/137 (37.96%), Postives = 80/137 (58.39%), Query Frame = 0


Query: 6   LKDLVPAAQNKVNTQFIVLEKG-MTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPS 65
           +KD+ P  +N +N  FIVLE G +T  +  ++V    VAD+T +++  +W D  ++++P 
Sbjct: 7   VKDIKPGLKN-LNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPG 66

Query: 66  DIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTIN-SNKY 125
           DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE +   +T   SNK 
Sbjct: 67  DIIRLTKGYASVFK-GCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYNTQQASNKS 126

Query: 126 VK--ESVLSPYSRIFPP 139
           V+   S  +P +   PP
Sbjct: 127 VQNDSSPTAPQATTGPP 141

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BLAST of Cmc02g0038141 vs. ExPASy Swiss-Prot
Match: Q8R2Y9 (SOSS complex subunit B1 OS=Mus musculus OX=10090 GN=Nabp2 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-13
Identity = 49/128 (38.28%), Postives = 77/128 (60.16%), Query Frame = 0


Query: 6   LKDLVPAAQNKVNTQFIVLEKG-MTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPS 65
           +KD+ P  +N +N  FIVLE G +T  +  ++V    VAD+T +++  +W D  ++++P 
Sbjct: 7   VKDIKPGLKN-LNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPG 66

Query: 66  DIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINS-NKY 125
           DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE +   +T  + NK 
Sbjct: 67  DIIRLTKGYASVFK-GCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYNTQQAPNKS 126

Query: 126 VKESVLSP 132
           V+ +  SP
Sbjct: 127 VQNNDNSP 132

[Close]

BLAST of Cmc02g0038141 vs. ExPASy Swiss-Prot
Match: A6QLK2 (SOSS complex subunit B1 OS=Bos taurus OX=9913 GN=NABP2 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.1e-13
Identity = 43/106 (40.57%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 6   LKDLVPAAQNKVNTQFIVLEKG-MTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPS 65
           +KD+ P  +N +N  FIVLE G +T  +  ++V    VAD+T +++  +W D  ++++P 
Sbjct: 7   VKDIKPGLKN-LNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPG 66

Query: 66  DIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSE 111
           DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE
Sbjct: 67  DIIRLTKGYASVFK-GCLTLYTGRGGDLQKIGEFCMVYSEVPNFSE 110

[Close]

BLAST of Cmc02g0038141 vs. ExPASy Swiss-Prot
Match: Q9BQ15 (SOSS complex subunit B1 OS=Homo sapiens OX=9606 GN=NABP2 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.1e-13
Identity = 43/106 (40.57%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 6   LKDLVPAAQNKVNTQFIVLEKG-MTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPS 65
           +KD+ P  +N +N  FIVLE G +T  +  ++V    VAD+T +++  +W D  ++++P 
Sbjct: 7   VKDIKPGLKN-LNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPG 66

Query: 66  DIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSE 111
           DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE
Sbjct: 67  DIIRLTKGYASVFK-GCLTLYTGRGGDLQKIGEFCMVYSEVPNFSE 110

[Close]

BLAST of Cmc02g0038141 vs. ExPASy TrEMBL
Match: A0A1S3BPN4 (SOSS complex subunit B homolog OS=Cucumis melo OX=3656 GN=LOC103492156 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.3e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MMMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDV 60
           MMMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDV
Sbjct: 1   MMMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDV 60

Query: 61  VEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINS 120
           VEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINS
Sbjct: 61  VEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINS 120

Query: 121 NKYVKESVLSPYSRIFPPIR 141
           NKYVKESVLSPYSRIFPPIR
Sbjct: 121 NKYVKESVLSPYSRIFPPIR 140

[Close]

BLAST of Cmc02g0038141 vs. ExPASy TrEMBL
Match: A0A5D3CIR3 (SOSS complex subunit B-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004040 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.3e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MMMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDV 60
           MMMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDV
Sbjct: 1   MMMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDV 60

Query: 61  VEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINS 120
           VEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINS
Sbjct: 61  VEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINS 120

Query: 121 NKYVKESVLSPYSRIFPPIR 141
           NKYVKESVLSPYSRIFPPIR
Sbjct: 121 NKYVKESVLSPYSRIFPPIR 140

[Close]

BLAST of Cmc02g0038141 vs. ExPASy TrEMBL
Match: A0A0A0LW03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569370 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 4.8e-73
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 2   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVV 61
           MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVV
Sbjct: 1   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVV 60

Query: 62  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 121
           EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN
Sbjct: 61  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 120

Query: 122 KYVKESVLSPYSRIFPPIR 141
           KYVKESVLSPYSRIFPPIR
Sbjct: 121 KYVKESVLSPYSRIFPPIR 139

[Close]

BLAST of Cmc02g0038141 vs. ExPASy TrEMBL
Match: A0A6J1HAL0 (SOSS complex subunit B homolog OS=Cucurbita moschata OX=3662 GN=LOC111462072 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.1e-68
Identity = 130/139 (93.53%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 2   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVV 61
           MMI LKDLVPAAQN VNTQFIVLEKGMTTMEGQNK CQSLVADETAAVHFQLWG+ECDVV
Sbjct: 1   MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVV 60

Query: 62  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 121
           EPSDI+RLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MVFVETPNMSEIHWVPDT NS 
Sbjct: 61  EPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNSK 120

Query: 122 KYVKESVLSPYSRIFPPIR 141
           KYVKESVLSPYSRIFPPIR
Sbjct: 121 KYVKESVLSPYSRIFPPIR 139

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BLAST of Cmc02g0038141 vs. ExPASy TrEMBL
Match: A0A6J1HZ66 (SOSS complex subunit B homolog OS=Cucurbita maxima OX=3661 GN=LOC111467936 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.2e-67
Identity = 128/139 (92.09%), Postives = 132/139 (94.96%), Query Frame = 0


Query: 2   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVV 61
           MMI LKDLVPAAQN VNTQFIVLEKGMTTM+GQNK CQSLVADETAAVHFQLWG+ECDVV
Sbjct: 1   MMISLKDLVPAAQNNVNTQFIVLEKGMTTMDGQNKTCQSLVADETAAVHFQLWGEECDVV 60

Query: 62  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 121
           EPSDI+RL NGIFSYSRNNNLVLRAGKRGKIEKVGEF MVFVETPNMSEIHWVPDT NS 
Sbjct: 61  EPSDILRLMNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTSNSK 120

Query: 122 KYVKESVLSPYSRIFPPIR 141
           KYVKESV+SPYSRIFPPIR
Sbjct: 121 KYVKESVVSPYSRIFPPIR 139

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BLAST of Cmc02g0038141 vs. TAIR 10
Match: AT5G63690.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 184.9 bits (468), Expect = 4.5e-47
Identity = 83/138 (60.14%), Postives = 107/138 (77.54%), Query Frame = 0


Query: 2   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVV 61
           M + LKD+VPAAQN ++T+FI+L+K  ++       C +L ADETAAVH QLWGDECD  
Sbjct: 1   MQLFLKDIVPAAQNNIDTRFIILDKAKSSAANGKNYCIALAADETAAVHIQLWGDECDAF 60

Query: 62  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 121
           E  DI++LTNGIFSY RN+ L+LRAGKRGK+EK+GEF + FVETPN+SEI W+PD  N  
Sbjct: 61  EAGDIVKLTNGIFSYVRNSGLILRAGKRGKMEKMGEFTVAFVETPNISEIQWIPDPENPK 120

Query: 122 KYVKESVLSPYSRIFPPI 140
           +Y++  V+S YSRIFPP+
Sbjct: 121 RYIQSGVVSAYSRIFPPL 138

The following BLAST results are available for this feature:

BLAST of Cmc02g0038141 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450623.1	2.6e-73	100.00	PREDICTED: SOSS complex subunit B homolog [Cucumis melo] >XP_008450625.1 PREDICT...	[more]
XP_004135609.1	1.0e-72	100.00	SOSS complex subunit B homolog [Cucumis sativus] >KGN66060.1 hypothetical protei...	[more]
XP_038878334.1	1.8e-69	96.40	SOSS complex subunit B homolog [Benincasa hispida] >XP_038878335.1 SOSS complex ...	[more]
XP_022961520.1	1.3e-67	93.53	SOSS complex subunit B homolog [Cucurbita moschata] >XP_022961521.1 SOSS complex...	[more]
XP_023515959.1	2.8e-67	92.09	SOSS complex subunit B homolog [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cmc02g0038141 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54X41	1.7e-14	39.82	SOSS complex subunit B homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0279...	[more]
Q3SWT1	1.1e-13	37.96	SOSS complex subunit B1 OS=Rattus norvegicus OX=10116 GN=Nabp2 PE=2 SV=1	[more]
Q8R2Y9	1.9e-13	38.28	SOSS complex subunit B1 OS=Mus musculus OX=10090 GN=Nabp2 PE=1 SV=1	[more]
A6QLK2	4.1e-13	40.57	SOSS complex subunit B1 OS=Bos taurus OX=9913 GN=NABP2 PE=2 SV=1	[more]
Q9BQ15	4.1e-13	40.57	SOSS complex subunit B1 OS=Homo sapiens OX=9606 GN=NABP2 PE=1 SV=1	[more]

BLAST of Cmc02g0038141 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BPN4	1.3e-73	100.00	SOSS complex subunit B homolog OS=Cucumis melo OX=3656 GN=LOC103492156 PE=4 SV=1	[more]
A0A5D3CIR3	1.3e-73	100.00	SOSS complex subunit B-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A0A0LW03	4.8e-73	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569370 PE=4 SV=1	[more]
A0A6J1HAL0	6.1e-68	93.53	SOSS complex subunit B homolog OS=Cucurbita moschata OX=3662 GN=LOC111462072 PE=...	[more]
A0A6J1HZ66	5.2e-67	92.09	SOSS complex subunit B homolog OS=Cucurbita maxima OX=3661 GN=LOC111467936 PE=4 ...	[more]

BLAST of Cmc02g0038141 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63690.1	4.5e-47	60.14	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 2..111 e-value: 1.1E-25 score: 91.9
None	No IPR available	PANTHER	PTHR13356:SF0	SOSS COMPLEX SUBUNIT B HOMOLOG	coord: 2..139
None	No IPR available	PANTHER	PTHR13356	OB FOLD NUCLEIC ACID BINDING PROTEIN-RELATED	coord: 2..139
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 3..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0038141.1	Cmc02g0038141.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0010212	response to ionizing radiation
cellular_component	GO:0070876	SOSS complex
molecular_function	GO:0003677	DNA binding