Cmc01g0036361 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0036361
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Crooked neck protein
Location	CMiso1.1chr01: 35320701 .. 35322148 (+)
RNA-Seq Expression	Cmc01g0036361
Synteny	Cmc01g0036361

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAACCTTGTGCTTGCTCGTGTATAGAAGCCTGCATTAATGGCGGAACCACCACCCAATACCCTAGCTCTCGCATTGATAACTCCATCCGTCGAAGCGAAGGCCTGAGAAGCCGACGTCGGGGAAGTGTCGGCCAGGCCAATATGGAAATTTCGAAGGAAAGACACGTTCGCATTCGTGAAAGGAACGCCGCCTCTTTCTAGTAGCAGCACGCTGAAGTTTTGTGATAATGTCGCCGCCAATGGACAACCGGCGGTACCACCGCCGACGATTATGTAATCGTAACCACCCTTTCTTTCATGGCTATCACGATAGAACGAGCTTGCGCGCTTGATGAACGGGTACCGCGATTTCATCCAGTTTTCCCTACCTGCACTTGCACAGTTTTTGATTTCTTTTGCTTGTTAATAATGGGAAGAATAACCAGGTTATTTTTCTGAAGATAAATAGCTCAAAATTCTGTGTTTATTTCTTGTGTGTGGATATTGTAGGGCAAAGAAGATGAGAAAAACTCAGAAACCAGTGATTCGATCCTTTCTAATCCTAGAAAGTTGAACCTCAACTATAATAGATTTCGTCTATTTTTTTCTTTTTTATGAGAAATGAATGGAAACAGAATTTTGTATGAAGTAGCTGCATTATAATGGAAGGTATCAGAAGAACCAACCTTGACAAGAAGAGAGGAGGTGTAAGAGGGTGAAGAGAACAAGGAAGAGAAAGAGCTTGACTGTCCCAACCAACGCCATTGATTTGCAGAAAAGGAAAAAGCCAGTCTCAGTAACAAAGGAAGCTGCTTCTTCAAAAACCTGTATGTGGCCTCTCCTGGTTGGTCTTGATTTATGTGTGGGTCACAGATTTATACTCAGAAACAAACCCCAAGAAAATTATGTGTTGAAATCAAACACCAATATAACACATCCATCTGGTAATGAAAAAGAAAATGACAGAGAAAAAAAAAGACTTCCAGTGTAACTACTGTATATATGCTTATTTAATGATGAATTCAATGTTGCAGTTGGAGTTTTGGATGGCTGTTCGTGGATCGTTGGATGAGGTCTTATGTGATTTGATCATGGCCTTTCATCAATACTAGAAGACAGCTCATTCACCGGTCTTCTATTTAACTGTATGGGTACGTATATTTATTGCTTTGGTAGCTACCAGTTGATATGGTCTACTAGTTTAAGTGATTTGAGGGAAAGCCATTATGATATTCATATTCTATAATCTTCAGAATAATAGCCGTAGGCGATATGTTGTGGGGCAGAAAAGGCTAAGCTGAAGAGAGGAAATTGGGTTCTTGAAGAGTGAAGTGTTGGTTATATCAGTTTATGGAACAAAATATCTTTTGTTTAAGAAGTTAGAGCCTCTTGACATTAATGACAATAGAAAACAAGAAATCACTCGTTTTATTTATTTATTTATTATGTCTCATTCTCATATT

mRNA sequence

ATGGAAGAACCTTGTGCTTGCTCGTGTATAGAAGCCTGCATTAATGGCGGAACCACCACCCAATACCCTAGCTCTCGCATTGATAACTCCATCCGTCGAAGCGAAGGCCTGAGAAGCCGACGTCGGGGAAGTGTCGGCCAGGCCAATATGGAAATTTCGAAGGAAAGACACGTTCGCATTCGTGAAAGGAACGCCGCCTCTTTCTAGTAGCAGCACGCTGAAGTTTTGTGATAATGTCGCCGCCAATGGACAACCGGCGGTACCACCGCCGACGATTATGTAATCGTAACCACCCTTTCTTTCATGGCTATCACGATAGAACGAGCTTGCGCGCTTGATGAACGGGGCAAAGAAGATGAGAAAAACTCAGAAACCAGTGATTCGATCCTTTCTAATCCTAGAAAGTTGAACCTCAACTATAATAGATTTCGTCTATTTTTTTCTTTTTTATGAGAAATGAATGGAAACAGAATTTTGTATGAAGTAGCTGCATTATAATGGAAGGTATCAGAAGAACCAACCTTGACAAGAAGAGAGGAGGTGTAAGAGGGTGAAGAGAACAAGGAAGAGAAAGAGCTTGACTGTCCCAACCAACGCCATTGATTTGCAGAAAAGGAAAAAGCCAGTCTCAGTAACAAAGGAAGCTGCTTCTTCAAAAACCTTTGGAGTTTTGGATGGCTGTTCGTGGATCGTTGGATGAGGTCTTATGTGATTTGATCATGGCCTTTCATCAATACTAGAAGACAGCTCATTCACCGGTCTTCTATTTAACTGTATGGGTACGTATATTTATTGCTTTGGTAGCTACCAGTTGATATGGTCTACTAGTTTAAGTGATTTGAGGGAAAGCCATTATGATATTCATATTCTATAATCTTCAGAATAATAGCCGTAGGCGATATGTTGTGGGGCAGAAAAGGCTAAGCTGAAGAGAGGAAATTGGGTTCTTGAAGAGTGAAGTGTTGGTTATATCAGTTTATGGAACAAAATATCTTTTGTTTAAGAAGTTAGAGCCTCTTGACATTAATGACAATAGAAAACAAGAAATCACTCGTTTTATTTATTTATTTATTATGTCTCATTCTCATATT

Coding sequence (CDS)

ATGGAAGAACCTTGTGCTTGCTCGTGTATAGAAGCCTGCATTAATGGCGGAACCACCACCCAATACCCTAGCTCTCGCATTGATAACTCCATCCGTCGAAGCGAAGGCCTGAGAAGCCGACGTCGGGGAAGTGTCGGCCAGGCCAATATGGAAATTTCGAAGGAAAGACACGTTCGCATTCGTGAAAGGAACGCCGCCTCTTTCTAG

Protein sequence

MEEPCACSCIEACINGGTTTQYPSSRIDNSIRRSEGLRSRRRGSVGQANMEISKERHVRIRERNAASF

Homology

[Close]

BLAST of Cmc01g0036361 vs. ExPASy TrEMBL
Match: A0A5A7R4L9 (Crooked neck protein OS=Striga asiatica OX=4170 GN=STAS_29822 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.7e-04
Identity = 28/63 (44.44%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 4   PCACSCIEACINGGTTTQYPSSRIDNSIRRSEGLRSRRRGSVGQANMEISKERHVRIRER 63
           P AC  ++  I+ G + + PS RI++++   E LR RRR  VGQ ++E+  ERHVR+RER
Sbjct: 40  PRACPGVKPRIDAGPSAENPSPRIEDAVGGDEHLRRRRRRDVGQRDVEVLHERHVRVRER 99

Query: 64  NAA 67
             A
Sbjct: 100 GPA 102

The following BLAST results are available for this feature:

BLAST of Cmc01g0036361 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc01g0036361 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc01g0036361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7R4L9	6.7e-04	44.44	Crooked neck protein OS=Striga asiatica OX=4170 GN=STAS_29822 PE=4 SV=1	[more]

BLAST of Cmc01g0036361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0036361.1	Cmc01g0036361.1	mRNA