Cmc01g0034941 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0034941
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	protein THYLAKOID ASSEMBLY 8, chloroplastic
Location	CMiso1.1chr01: 34364108 .. 34364800 (-)
RNA-Seq Expression	Cmc01g0034941
Synteny	Cmc01g0034941

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTCTCTTCGCTCCACATTTCTCAAATCCCAAATCTCAATTCCGATCCCCACCTCCACCGCTACAGCCGCGGTCGCCGTTTCCTTTCGAGTACGCTGCGGCCCACGGGACAACCGAGGACCATTAGTGAAAGGCAGAACCCTAAGCATCGAAGCAATCCAAGCGATTCAATCCCTAAAACGGGCCGAGAGATCCGACCCGACGAAGCTCCAACAAGTCCTCTCCACTACACTCTCCCGATTGCTCAAAGCCGACCTCGTCGCCACCTTAAAGGAGCTCCTCCGGCAGGAACGATGCGCCCTAGCGTTGGAGGTTTTCGCCGTAATCAGATCAGAGTACCGCGCCGAATTGGGGCTGTACGCGGAGGTGGCGGCGGCGCTGTCGAGGAACGGAGCGGCGGAGGAAATCGACCGACTGGTTTGCGATTTAGACGGCAGAGATGGAGTAATCGAGTGGGGGGATGACGATAAGGGTTTGATTAAGTTGATTAAGGCGGTGATTAGTGGGAATAGAAGGGAATCGACGGTGAGGATTTATCGAATGATGAGGAGGAACGGTTGGGGATCGATGATTAAAGGTGATGATTATATGATTAAGGTTATGAGTAAGGGTTTAAGGAGGGTTGGGGAATTAGAATTAGCTGATGAGATAAATAGGGAATTTCAAGACTTAGTGGGGAGTTTATGA

mRNA sequence

ATGGCTTCTTCTCTTCGCTCCACATTTCTCAAATCCCAAATCTCAATTCCGATCCCCACCTCCACCGCTACAGCCGCGGTCGCCGTTTCCTTTCGAGTACGCTGCGGCCCACGGGACAACCGAGGACCATTAGTGAAAGGCAGAACCCTAAGCATCGAAGCAATCCAAGCGATTCAATCCCTAAAACGGGCCGAGAGATCCGACCCGACGAAGCTCCAACAAGTCCTCTCCACTACACTCTCCCGATTGCTCAAAGCCGACCTCGTCGCCACCTTAAAGGAGCTCCTCCGGCAGGAACGATGCGCCCTAGCGTTGGAGGTTTTCGCCGTAATCAGATCAGAGTACCGCGCCGAATTGGGGCTGTACGCGGAGGTGGCGGCGGCGCTGTCGAGGAACGGAGCGGCGGAGGAAATCGACCGACTGGTTTGCGATTTAGACGGCAGAGATGGAGTAATCGAGTGGGGGGATGACGATAAGGGTTTGATTAAGTTGATTAAGGCGGTGATTAGTGGGAATAGAAGGGAATCGACGGTGAGGATTTATCGAATGATGAGGAGGAACGGTTGGGGATCGATGATTAAAGGTGATGATTATATGATTAAGGTTATGAGTAAGGGTTTAAGGAGGGTTGGGGAATTAGAATTAGCTGATGAGATAAATAGGGAATTTCAAGACTTAGTGGGGAGTTTATGA

Coding sequence (CDS)

ATGGCTTCTTCTCTTCGCTCCACATTTCTCAAATCCCAAATCTCAATTCCGATCCCCACCTCCACCGCTACAGCCGCGGTCGCCGTTTCCTTTCGAGTACGCTGCGGCCCACGGGACAACCGAGGACCATTAGTGAAAGGCAGAACCCTAAGCATCGAAGCAATCCAAGCGATTCAATCCCTAAAACGGGCCGAGAGATCCGACCCGACGAAGCTCCAACAAGTCCTCTCCACTACACTCTCCCGATTGCTCAAAGCCGACCTCGTCGCCACCTTAAAGGAGCTCCTCCGGCAGGAACGATGCGCCCTAGCGTTGGAGGTTTTCGCCGTAATCAGATCAGAGTACCGCGCCGAATTGGGGCTGTACGCGGAGGTGGCGGCGGCGCTGTCGAGGAACGGAGCGGCGGAGGAAATCGACCGACTGGTTTGCGATTTAGACGGCAGAGATGGAGTAATCGAGTGGGGGGATGACGATAAGGGTTTGATTAAGTTGATTAAGGCGGTGATTAGTGGGAATAGAAGGGAATCGACGGTGAGGATTTATCGAATGATGAGGAGGAACGGTTGGGGATCGATGATTAAAGGTGATGATTATATGATTAAGGTTATGAGTAAGGGTTTAAGGAGGGTTGGGGAATTAGAATTAGCTGATGAGATAAATAGGGAATTTCAAGACTTAGTGGGGAGTTTATGA

Protein sequence

MASSLRSTFLKSQISIPIPTSTATAAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQSLKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAELGLYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRIYRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGELELADEINREFQDLVGSL

Homology

[Close]

BLAST of Cmc01g0034941 vs. NCBI nr
Match: KAA0059315.1 (uncharacterized protein E6C27_scaffold242G00390 [Cucumis melo var. makuwa] >TYK04013.1 uncharacterized protein E5676_scaffold347G002110 [Cucumis melo var. makuwa])

HSP 1 Score: 431.0 bits (1107), Expect = 6.3e-117
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0


Query: 1   MASSLRSTFLKSQISIPIPTSTATAAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60
           MASSLRSTFLKSQISIPIPTSTATAAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS
Sbjct: 1   MASSLRSTFLKSQISIPIPTSTATAAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60

Query: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAELG 120
           LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAELG
Sbjct: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAELG 120

Query: 121 LYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 180
           LYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI
Sbjct: 121 LYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 180

Query: 181 YRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGELELADEINREFQDLVGSL 231
           YRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGELELADEINREFQDLVGSL
Sbjct: 181 YRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGELELADEINREFQDLVGSL 230

[Close]

BLAST of Cmc01g0034941 vs. NCBI nr
Match: XP_008462172.1 (PREDICTED: uncharacterized protein LOC103500597 [Cucumis melo])

HSP 1 Score: 428.3 bits (1100), Expect = 4.1e-116
Identity = 228/230 (99.13%), Postives = 229/230 (99.57%), Query Frame = 0


Query: 1   MASSLRSTFLKSQISIPIPTSTATAAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60
           MASSL STFLKSQISIPIPTSTATAAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS
Sbjct: 28  MASSLHSTFLKSQISIPIPTSTATAAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 87

Query: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAELG 120
           LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAELG
Sbjct: 88  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAELG 147

Query: 121 LYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 180
           LYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI
Sbjct: 148 LYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 207

Query: 181 YRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGELELADEINREFQDLVGSL 231
           YRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGE+ELADEINREFQDLVGSL
Sbjct: 208 YRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGEIELADEINREFQDLVGSL 257

[Close]

BLAST of Cmc01g0034941 vs. NCBI nr
Match: XP_004141838.1 (protein THYLAKOID ASSEMBLY 8, chloroplastic [Cucumis sativus] >KGN45390.1 hypothetical protein Csa_016867 [Cucumis sativus])

HSP 1 Score: 406.0 bits (1042), Expect = 2.2e-109
Identity = 216/229 (94.32%), Postives = 222/229 (96.94%), Query Frame = 0


Query: 1   MASSLRSTFLKSQISIPIPTSTATAAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60
           MASSL STFLKSQISIPIP STAT+ VAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS
Sbjct: 1   MASSLHSTFLKSQISIPIPASTATSPVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60

Query: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAELG 120
           LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVI+SEYRAELG
Sbjct: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIKSEYRAELG 120

Query: 121 LYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 180
           LYAEVAAALSRNGAAEEIDRLV DLDG DGVIEWGDDDKGLIKLIKAVISGNRRESTVRI
Sbjct: 121 LYAEVAAALSRNGAAEEIDRLVSDLDGGDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 180

Query: 181 YRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGELELADEINREFQDLVGS 230
           YRMMRR GWGSMIK DDYMIKV+SKGLRR+GE+ELADEINREF+DLVGS
Sbjct: 181 YRMMRRKGWGSMIKADDYMIKVLSKGLRRLGEIELADEINREFEDLVGS 229

[Close]

BLAST of Cmc01g0034941 vs. NCBI nr
Match: XP_038898717.1 (protein THYLAKOID ASSEMBLY 8, chloroplastic [Benincasa hispida])

HSP 1 Score: 372.5 bits (955), Expect = 2.7e-99
Identity = 201/230 (87.39%), Postives = 216/230 (93.91%), Query Frame = 0


Query: 1   MASSLRSTFLKSQISIPIPTSTATAAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60
           MASS+ STFLKSQISIPIP S A AAVAVS  VRCGPRDNRGPLVKGRTLSIEAIQAIQS
Sbjct: 1   MASSIHSTFLKSQISIPIPVS-AAAAVAVSLPVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60

Query: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAELG 120
           LKRAERSDPTKLQQVLSTTLSRLLKADLVA+LKELLRQ+RCALALEVFAVIRSEY A+LG
Sbjct: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVASLKELLRQDRCALALEVFAVIRSEYGADLG 120

Query: 121 LYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 180
           +YAEVAAALSRNGAAEEIDRLVCDLDG D +I+W  DDKGLIKLIKAVISG+RRESTVRI
Sbjct: 121 MYAEVAAALSRNGAAEEIDRLVCDLDGGDVLIQW--DDKGLIKLIKAVISGDRRESTVRI 180

Query: 181 YRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGELELADEINREFQDLVGSL 231
           YRMMRRNGWGS IK DDY+++V+SKGLRR GE+ELADEINREFQDLVG++
Sbjct: 181 YRMMRRNGWGSTIKADDYLVRVLSKGLRRFGEMELADEINREFQDLVGNV 227

[Close]

BLAST of Cmc01g0034941 vs. NCBI nr
Match: XP_022992386.1 (protein THYLAKOID ASSEMBLY 8, chloroplastic [Cucurbita maxima])

HSP 1 Score: 347.8 bits (891), Expect = 7.1e-92
Identity = 188/229 (82.10%), Postives = 206/229 (89.96%), Query Frame = 0


Query: 1   MASSLRSTFLKSQISIPIPTSTATAAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60
           MA SL STFLKSQI IPIP S ATA V VS  VRCGPRDNRGPLVKGRTLS EAIQAIQS
Sbjct: 1   MAFSLHSTFLKSQIPIPIPIS-ATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60

Query: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAELG 120
           LKRAE+SDPTKL+QVLSTTLSRLLKADLVATLKELLRQ+RCALALEVFAV+RSEY  +LG
Sbjct: 61  LKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGVDLG 120

Query: 121 LYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 180
           +YAEVAAALSRNGA EEIDRLVCDL+  D VI+   DDKGLIKLIKAVI G+RRESTVRI
Sbjct: 121 MYAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQC--DDKGLIKLIKAVIGGDRRESTVRI 180

Query: 181 YRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGELELADEINREFQDLVGS 230
           YRMM+R+GWGS IK DDYM++V+SKGLRR+GE+E+ADEIN +FQDLVGS
Sbjct: 181 YRMMKRSGWGSTIKADDYMVRVLSKGLRRLGEMEMADEINMQFQDLVGS 226

[Close]

BLAST of Cmc01g0034941 vs. ExPASy Swiss-Prot
Match: Q9LVW6 (Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 6.3e-43
Identity = 107/218 (49.08%), Postives = 149/218 (68.35%), Query Frame = 0


Query: 12  SQISIPIPTSTATAAVAVSFR----VRCGPRDNRGPLVKGRTLSIEAIQAIQSLKRAERS 71
           SQ   P  + + T +V V  R    +RCGPRDNRGPL+KGR LS EAIQ+IQSLKRA R+
Sbjct: 6   SQTRPPSLSHSHTLSVIVPKRTFVSIRCGPRDNRGPLLKGRILSTEAIQSIQSLKRAHRT 65

Query: 72  DPTKLQQVLSTT---LSRLLKADLVATLKELLRQERCALALEVFAVIRSEY-RAELGLYA 131
             +     LS T   L RL+K+DL++ L+ELLRQ+ C LA+ V + +R+EY   +L LYA
Sbjct: 66  GVS-----LSLTLRPLRRLIKSDLISVLRELLRQDYCTLAVHVLSTLRTEYPPLDLVLYA 125

Query: 132 EVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRIYRM 191
           ++  AL+RN   +EIDRL+ ++DG    I+   DDK L KLI+AV+   RRES VR+Y +
Sbjct: 126 DIVNALTRNKEFDEIDRLIGEIDG----IDQRSDDKALAKLIRAVVGAERRESVVRVYTL 185

Query: 192 MRRNGWGS-MIKGDDYMIKVMSKGLRRVGELELADEIN 221
           MR +GWGS   + D+Y+ +V+SKGL R+GE +LA +++
Sbjct: 186 MRESGWGSESWEADEYVAEVLSKGLLRLGEPDLASQVS 214

[Close]

BLAST of Cmc01g0034941 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.6e-06
Identity = 37/100 (37.00%), Postives = 63/100 (63.00%), Query Frame = 0


Query: 41  RGPLVKGRTL-SIEAIQAIQSLKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQE 100
           RGPL +G+ L   EA+  I  LKR  + D  KL + + T + RLLK D++A + EL RQE
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRL-KEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQE 122

Query: 101 RCALALEVFAVIRSE--YRAELGLYAEVAAALSRNGAAEE 138
             ALA+++F VI+ +  Y+ ++ +Y ++  +L+++   +E
Sbjct: 123 ETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDE 161

[Close]

BLAST of Cmc01g0034941 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.8e-05
Identity = 48/179 (26.82%), Postives = 89/179 (49.72%), Query Frame = 0


Query: 50  LSIEAIQAIQSLKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFA 109
           +S E + A + LKR + +   +L + + + +SRLLK+DLV+ L E  RQ +  L ++++ 
Sbjct: 1   MSKEGLIAAKELKRLQ-TQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYE 60

Query: 110 VIRSE--YRAELGLYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKA 169
           V+R E  YR ++  Y ++   L+RN   +E  ++  DL   + +     D      L++ 
Sbjct: 61  VVRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLF----DQHTFGDLVRG 120

Query: 170 VISGNRRESTVRIYRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGELELADEINREFQDL 227
            +        +R+Y  MR     S  +      +V+ KGL  V   EL +++  +F +L
Sbjct: 121 FLDNELPLEAMRLYGEMRE----SPDRPLSLPFRVILKGL--VPYPELREKVKDDFLEL 168

[Close]

BLAST of Cmc01g0034941 vs. ExPASy TrEMBL
Match: A0A5A7V0E2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002110 PE=4 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 3.1e-117
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0


Query: 1   MASSLRSTFLKSQISIPIPTSTATAAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60
           MASSLRSTFLKSQISIPIPTSTATAAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS
Sbjct: 1   MASSLRSTFLKSQISIPIPTSTATAAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60

Query: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAELG 120
           LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAELG
Sbjct: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAELG 120

Query: 121 LYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 180
           LYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI
Sbjct: 121 LYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 180

Query: 181 YRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGELELADEINREFQDLVGSL 231
           YRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGELELADEINREFQDLVGSL
Sbjct: 181 YRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGELELADEINREFQDLVGSL 230

[Close]

BLAST of Cmc01g0034941 vs. ExPASy TrEMBL
Match: A0A1S3CGD3 (uncharacterized protein LOC103500597 OS=Cucumis melo OX=3656 GN=LOC103500597 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 2.0e-116
Identity = 228/230 (99.13%), Postives = 229/230 (99.57%), Query Frame = 0


Query: 1   MASSLRSTFLKSQISIPIPTSTATAAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60
           MASSL STFLKSQISIPIPTSTATAAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS
Sbjct: 28  MASSLHSTFLKSQISIPIPTSTATAAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 87

Query: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAELG 120
           LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAELG
Sbjct: 88  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAELG 147

Query: 121 LYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 180
           LYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI
Sbjct: 148 LYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 207

Query: 181 YRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGELELADEINREFQDLVGSL 231
           YRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGE+ELADEINREFQDLVGSL
Sbjct: 208 YRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGEIELADEINREFQDLVGSL 257

[Close]

BLAST of Cmc01g0034941 vs. ExPASy TrEMBL
Match: A0A0A0K6N6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447050 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 1.1e-109
Identity = 216/229 (94.32%), Postives = 222/229 (96.94%), Query Frame = 0


Query: 1   MASSLRSTFLKSQISIPIPTSTATAAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60
           MASSL STFLKSQISIPIP STAT+ VAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS
Sbjct: 1   MASSLHSTFLKSQISIPIPASTATSPVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60

Query: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAELG 120
           LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVI+SEYRAELG
Sbjct: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIKSEYRAELG 120

Query: 121 LYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 180
           LYAEVAAALSRNGAAEEIDRLV DLDG DGVIEWGDDDKGLIKLIKAVISGNRRESTVRI
Sbjct: 121 LYAEVAAALSRNGAAEEIDRLVSDLDGGDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 180

Query: 181 YRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGELELADEINREFQDLVGS 230
           YRMMRR GWGSMIK DDYMIKV+SKGLRR+GE+ELADEINREF+DLVGS
Sbjct: 181 YRMMRRKGWGSMIKADDYMIKVLSKGLRRLGEIELADEINREFEDLVGS 229

[Close]

BLAST of Cmc01g0034941 vs. ExPASy TrEMBL
Match: A0A6J1JTE8 (protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488709 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 3.4e-92
Identity = 188/229 (82.10%), Postives = 206/229 (89.96%), Query Frame = 0


Query: 1   MASSLRSTFLKSQISIPIPTSTATAAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60
           MA SL STFLKSQI IPIP S ATA V VS  VRCGPRDNRGPLVKGRTLS EAIQAIQS
Sbjct: 1   MAFSLHSTFLKSQIPIPIPIS-ATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60

Query: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAELG 120
           LKRAE+SDPTKL+QVLSTTLSRLLKADLVATLKELLRQ+RCALALEVFAV+RSEY  +LG
Sbjct: 61  LKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGVDLG 120

Query: 121 LYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 180
           +YAEVAAALSRNGA EEIDRLVCDL+  D VI+   DDKGLIKLIKAVI G+RRESTVRI
Sbjct: 121 MYAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQC--DDKGLIKLIKAVIGGDRRESTVRI 180

Query: 181 YRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGELELADEINREFQDLVGS 230
           YRMM+R+GWGS IK DDYM++V+SKGLRR+GE+E+ADEIN +FQDLVGS
Sbjct: 181 YRMMKRSGWGSTIKADDYMVRVLSKGLRRLGEMEMADEINMQFQDLVGS 226

[Close]

BLAST of Cmc01g0034941 vs. ExPASy TrEMBL
Match: A0A6J1GQS0 (protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111456620 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 2.9e-91
Identity = 186/229 (81.22%), Postives = 205/229 (89.52%), Query Frame = 0


Query: 1   MASSLRSTFLKSQISIPIPTSTATAAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60
           MA SL STFLKSQI IPIP S A A V VS  VRCGPRDNRGPLVKGRTLS EAIQAIQS
Sbjct: 1   MAFSLHSTFLKSQIPIPIPIS-AAATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60

Query: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAELG 120
           LKRAE+SDPTKL+QVLSTTLSRLLKADLVATLKELLRQ+RCALALEVFAV+RSEY A+LG
Sbjct: 61  LKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGADLG 120

Query: 121 LYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 180
           +YAEVAAALSRNGA EEIDRLVCDL+  D VI+   DDKGLIKLIKAVI G+RRESTVRI
Sbjct: 121 MYAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQC--DDKGLIKLIKAVIGGDRRESTVRI 180

Query: 181 YRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGELELADEINREFQDLVGS 230
           YRMM+R+GWGS IK DDY ++V+SKGLRR+GE+E+ADE+N +FQDLVGS
Sbjct: 181 YRMMKRSGWGSTIKADDYTVRVLSKGLRRLGEMEMADEVNMQFQDLVGS 226

[Close]

BLAST of Cmc01g0034941 vs. TAIR 10
Match: AT3G27750.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 175.6 bits (444), Expect = 4.5e-44
Identity = 107/218 (49.08%), Postives = 149/218 (68.35%), Query Frame = 0


Query: 12  SQISIPIPTSTATAAVAVSFR----VRCGPRDNRGPLVKGRTLSIEAIQAIQSLKRAERS 71
           SQ   P  + + T +V V  R    +RCGPRDNRGPL+KGR LS EAIQ+IQSLKRA R+
Sbjct: 6   SQTRPPSLSHSHTLSVIVPKRTFVSIRCGPRDNRGPLLKGRILSTEAIQSIQSLKRAHRT 65

Query: 72  DPTKLQQVLSTT---LSRLLKADLVATLKELLRQERCALALEVFAVIRSEY-RAELGLYA 131
             +     LS T   L RL+K+DL++ L+ELLRQ+ C LA+ V + +R+EY   +L LYA
Sbjct: 66  GVS-----LSLTLRPLRRLIKSDLISVLRELLRQDYCTLAVHVLSTLRTEYPPLDLVLYA 125

Query: 132 EVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRIYRM 191
           ++  AL+RN   +EIDRL+ ++DG    I+   DDK L KLI+AV+   RRES VR+Y +
Sbjct: 126 DIVNALTRNKEFDEIDRLIGEIDG----IDQRSDDKALAKLIRAVVGAERRESVVRVYTL 185

Query: 192 MRRNGWGS-MIKGDDYMIKVMSKGLRRVGELELADEIN 221
           MR +GWGS   + D+Y+ +V+SKGL R+GE +LA +++
Sbjct: 186 MRESGWGSESWEADEYVAEVLSKGLLRLGEPDLASQVS 214

[Close]

BLAST of Cmc01g0034941 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 85.9 bits (211), Expect = 4.7e-17
Identity = 66/208 (31.73%), Postives = 106/208 (50.96%), Query Frame = 0


Query: 40  NRGPLVKGRTLSIEAIQAIQSLKRAE--------------RSDPTKLQQVLSTTLSRLLK 99
           NR PL +GR LSIEAIQA+Q+LKRA                S    L +V+ +   RLLK
Sbjct: 495 NRKPLQRGRMLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVIISKFRRLLK 554

Query: 100 ADLVATLKELLRQERCALALEVFAVIRSE--YRAELGLYAEVAAALSRNGAAEEIDRLVC 159
            D+VA L+ELLRQ  C+LAL+VF  IR E  Y+ ++ +Y ++   ++ N   EE++ L  
Sbjct: 555 FDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVNYLYS 614

Query: 160 DLDGRDGV---IEWGDDDKGLIKLIKAVISGNRRESTVRIYRMMRRNGWGSMIKGDDYMI 219
            +    G+   IEW +       L+  +++    +  +  Y  M+  G+    + D    
Sbjct: 615 AMKSEKGLMAEIEWFN------TLLTILLNHKLFDLVMDCYAFMQSIGY----EPDRASF 674

Query: 220 KVMSKGLRRVGELELADEINREFQDLVG 229
           +V+  GL   GE+ L+  + ++  +  G
Sbjct: 675 RVLVLGLESNGEMGLSAIVRQDAHEYYG 692

[Close]

BLAST of Cmc01g0034941 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 53.5 bits (127), Expect = 2.6e-07
Identity = 37/100 (37.00%), Postives = 63/100 (63.00%), Query Frame = 0


Query: 41  RGPLVKGRTL-SIEAIQAIQSLKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQE 100
           RGPL +G+ L   EA+  I  LKR  + D  KL + + T + RLLK D++A + EL RQE
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRL-KEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQE 122

Query: 101 RCALALEVFAVIRSE--YRAELGLYAEVAAALSRNGAAEE 138
             ALA+++F VI+ +  Y+ ++ +Y ++  +L+++   +E
Sbjct: 123 ETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDE 161

[Close]

BLAST of Cmc01g0034941 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 1.3e-06
Identity = 48/179 (26.82%), Postives = 89/179 (49.72%), Query Frame = 0


Query: 50  LSIEAIQAIQSLKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFA 109
           +S E + A + LKR + +   +L + + + +SRLLK+DLV+ L E  RQ +  L ++++ 
Sbjct: 1   MSKEGLIAAKELKRLQ-TQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYE 60

Query: 110 VIRSE--YRAELGLYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKA 169
           V+R E  YR ++  Y ++   L+RN   +E  ++  DL   + +     D      L++ 
Sbjct: 61  VVRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLF----DQHTFGDLVRG 120

Query: 170 VISGNRRESTVRIYRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGELELADEINREFQDL 227
            +        +R+Y  MR     S  +      +V+ KGL  V   EL +++  +F +L
Sbjct: 121 FLDNELPLEAMRLYGEMRE----SPDRPLSLPFRVILKGL--VPYPELREKVKDDFLEL 168

The following BLAST results are available for this feature:

BLAST of Cmc01g0034941 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059315.1	6.3e-117	100.00	uncharacterized protein E6C27_scaffold242G00390 [Cucumis melo var. makuwa] >TYK0...	[more]
XP_008462172.1	4.1e-116	99.13	PREDICTED: uncharacterized protein LOC103500597 [Cucumis melo]	[more]
XP_004141838.1	2.2e-109	94.32	protein THYLAKOID ASSEMBLY 8, chloroplastic [Cucumis sativus] >KGN45390.1 hypoth...	[more]
XP_038898717.1	2.7e-99	87.39	protein THYLAKOID ASSEMBLY 8, chloroplastic [Benincasa hispida]	[more]
XP_022992386.1	7.1e-92	82.10	protein THYLAKOID ASSEMBLY 8, chloroplastic [Cucurbita maxima]	[more]

BLAST of Cmc01g0034941 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVW6	6.3e-43	49.08	Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=T...	[more]
Q9STF9	3.6e-06	37.00	Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q1PFH7	1.8e-05	26.82	Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX...	[more]

BLAST of Cmc01g0034941 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V0E2	3.1e-117	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CGD3	2.0e-116	99.13	uncharacterized protein LOC103500597 OS=Cucumis melo OX=3656 GN=LOC103500597 PE=...	[more]
A0A0A0K6N6	1.1e-109	94.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447050 PE=4 SV=1	[more]
A0A6J1JTE8	3.4e-92	82.10	protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GQS0	2.9e-91	81.22	protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of Cmc01g0034941 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27750.1	4.5e-44	49.08	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT5G09320.1	4.7e-17	31.73	Vacuolar sorting protein 9 (VPS9) domain	[more]
AT3G46870.1	2.6e-07	37.00	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62350.1	1.3e-06	26.82	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 49..226 e-value: 6.2E-29 score: 102.9
None	No IPR available	PANTHER	PTHR47594:SF3	PROTEIN THYLAKOID ASSEMBLY 8, CHLOROPLASTIC	coord: 10..227
IPR044190	Protein THYLAKOID ASSEMBLY 8-like	PANTHER	PTHR47594	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 10..227

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0034941.1	Cmc01g0034941.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0000373	Group II intron splicing
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding