Cmc01g0025231 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0025231
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	CMiso1.1chr01: 25926835 .. 25927275 (+)
RNA-Seq Expression	Cmc01g0025231
Synteny	Cmc01g0025231

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTAAAAACTACCTTTCTAAATGGTGATTTAGAAGAAGAAATTTATATGACACAACCAGAAGGGTTTAAAATTTATGACCAAGAAAACAAAGTGTGTAAACTTAGAAAATCTCTATATGGTCTCAAGCAAGCTCCTAAACAGTGGTATGAAAAATTTAATAATACTTTGATAAACAATGAATTTAAAGTAAATTCCTCAGATACGTGTGTTTATTCAAAATTGTTTGGAGCTGATTGCATATTAATATGTCTATATGTTAATGACATGTTGATTTTTGGAACAAACATGGAGTTGATAAATGATACTAAGTTGTTCCTTTCATCACACTTTGAAATGAAAGACCTAGGAGAAGCAAACATAATTCTTGGTGTTAAAATCAGAAAAACAAAACTGGTCTGTCCCTACGTCAATCTCACTACGTGGAGAAAATACTAA

mRNA sequence

ATGGATGTAAAAACTACCTTTCTAAATGGTGATTTAGAAGAAGAAATTTATATGACACAACCAGAAGGGTTTAAAATTTATGACCAAGAAAACAAAGTGTGTAAACTTAGAAAATCTCTATATGGTCTCAAGCAAGCTCCTAAACAGTGGTATGAAAAATTTAATAATACTTTGATAAACAATGAATTTAAAGTAAATTCCTCAGATACGTGTGTTTATTCAAAATTGTTTGGAGCTGATTGCATATTAATATGTCTATATGTTAATGACATGTTGATTTTTGGAACAAACATGGAGTTGATAAATGATACTAAGTTGTTCCTTTCATCACACTTTGAAATGAAAGACCTAGGAGAAGCAAACATAATTCTTGGTGTTAAAATCAGAAAAACAAAACTGGTCTGTCCCTACGTCAATCTCACTACGTGGAGAAAATACTAA

Coding sequence (CDS)

ATGGATGTAAAAACTACCTTTCTAAATGGTGATTTAGAAGAAGAAATTTATATGACACAACCAGAAGGGTTTAAAATTTATGACCAAGAAAACAAAGTGTGTAAACTTAGAAAATCTCTATATGGTCTCAAGCAAGCTCCTAAACAGTGGTATGAAAAATTTAATAATACTTTGATAAACAATGAATTTAAAGTAAATTCCTCAGATACGTGTGTTTATTCAAAATTGTTTGGAGCTGATTGCATATTAATATGTCTATATGTTAATGACATGTTGATTTTTGGAACAAACATGGAGTTGATAAATGATACTAAGTTGTTCCTTTCATCACACTTTGAAATGAAAGACCTAGGAGAAGCAAACATAATTCTTGGTGTTAAAATCAGAAAAACAAAACTGGTCTGTCCCTACGTCAATCTCACTACGTGGAGAAAATACTAA

Protein sequence

MDVKTTFLNGDLEEEIYMTQPEGFKIYDQENKVCKLRKSLYGLKQAPKQWYEKFNNTLINNEFKVNSSDTCVYSKLFGADCILICLYVNDMLIFGTNMELINDTKLFLSSHFEMKDLGEANIILGVKIRKTKLVCPYVNLTTWRKY

Homology

[Close]

BLAST of Cmc01g0025231 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 242.3 bits (617), Expect = 2.7e-60
Identity = 117/132 (88.64%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 1    MDVKTTFLNGDLEEEIYMTQPEGFKIYDQENKVCKLRKSLYGLKQAPKQWYEKFNNTLIN 60
            MDVKT FLNG+LEEEIYMTQPEGFKI  QENKVCKLRKSLYGLKQAPKQWYEKFNNTLI 
Sbjct: 944  MDVKTAFLNGNLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLIT 1003

Query: 61   NEFKVNSSDTCVYSKLFGADCILICLYVNDMLIFGTNMELINDTKLFLSSHFEMKDLGEA 120
            N FK+NSSDTCVYSK+ GADCILICLYV+DMLIFGTNMELI DTK FLSSHFEMKDLGEA
Sbjct: 1004 NGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKYFLSSHFEMKDLGEA 1063

Query: 121  NIILGVKIRKTK 133
            ++ILGVKIRK K
Sbjct: 1064 DVILGVKIRKNK 1075

[Close]

BLAST of Cmc01g0025231 vs. NCBI nr
Match: XP_027936188.1 (uncharacterized protein LOC114191208 [Vigna unguiculata])

HSP 1 Score: 210.7 bits (535), Expect = 8.6e-51
Identity = 99/132 (75.00%), Postives = 116/132 (87.88%), Query Frame = 0


Query: 1   MDVKTTFLNGDLEEEIYMTQPEGFKIYDQENKVCKLRKSLYGLKQAPKQWYEKFNNTLIN 60
           MDVK  FLNGDLEEEIYM QPEGF +  QE  VCKL KSLY LKQAPKQWYEKF+ TL+N
Sbjct: 503 MDVKMAFLNGDLEEEIYMDQPEGFVVAGQEANVCKLIKSLYDLKQAPKQWYEKFDRTLVN 562

Query: 61  NEFKVNSSDTCVYSKLFGADCILICLYVNDMLIFGTNMELINDTKLFLSSHFEMKDLGEA 120
           N + VN+S++CVYSKLFG++C++ICLYV+DMLIFG N+E+INDTK FL +HFEMKDLGEA
Sbjct: 563 NGYVVNASNSCVYSKLFGSNCVIICLYVDDMLIFGFNLEVINDTKTFLIAHFEMKDLGEA 622

Query: 121 NIILGVKIRKTK 133
           N+ILGVKIRKT+
Sbjct: 623 NVILGVKIRKTE 634

[Close]

BLAST of Cmc01g0025231 vs. NCBI nr
Match: KAA0066068.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYJ99829.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 195.3 bits (495), Expect = 3.7e-46
Identity = 91/132 (68.94%), Postives = 112/132 (84.85%), Query Frame = 0


Query: 1   MDVKTTFLNGDLEEEIYMTQPEGFKIYDQENKVCKLRKSLYGLKQAPKQWYEKFNNTLIN 60
           MDVKT FLNGDLEEE YM QPEGF +YDQE+KVCKL KSLYGLKQAPKQW+EKF+N L++
Sbjct: 1   MDVKTAFLNGDLEEENYMEQPEGFIVYDQESKVCKLGKSLYGLKQAPKQWHEKFDNLLMS 60

Query: 61  NEFKVNSSDTCVYSKLFGADCILICLYVNDMLIFGTNMELINDTKLFLSSHFEMKDLGEA 120
             FKVN SD C+Y K  G  CI+ICLYV+DMLIFG+N+ +IND K  LS++F+MKDLGEA
Sbjct: 61  KGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHIINDVKSMLSANFDMKDLGEA 120

Query: 121 NIILGVKIRKTK 133
           ++ILG++I +T+
Sbjct: 121 DVILGIRIIRTE 132

[Close]

BLAST of Cmc01g0025231 vs. NCBI nr
Match: KAA0060459.1 (hypothetical protein E6C27_scaffold22G002870 [Cucumis melo var. makuwa] >TYK18544.1 hypothetical protein E5676_scaffold119G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 194.5 bits (493), Expect = 6.3e-46
Identity = 91/132 (68.94%), Postives = 112/132 (84.85%), Query Frame = 0


Query: 1   MDVKTTFLNGDLEEEIYMTQPEGFKIYDQENKVCKLRKSLYGLKQAPKQWYEKFNNTLIN 60
           MDVKT FLNGDLEEEIYM QPEGF +++QE+KVCKL KSLYGLKQAPKQW+EKF+N L++
Sbjct: 1   MDVKTAFLNGDLEEEIYMEQPEGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMS 60

Query: 61  NEFKVNSSDTCVYSKLFGADCILICLYVNDMLIFGTNMELINDTKLFLSSHFEMKDLGEA 120
             FKVN SD C+Y K  G  CI+ICLYV+DMLIFG+N+ +IND K  LS +F+MKDLGEA
Sbjct: 61  KGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMKDLGEA 120

Query: 121 NIILGVKIRKTK 133
           ++ILG+KI +T+
Sbjct: 121 DVILGIKITRTE 132

[Close]

BLAST of Cmc01g0025231 vs. NCBI nr
Match: KAG7551885.1 (Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 191.0 bits (484), Expect = 7.0e-45
Identity = 91/131 (69.47%), Postives = 109/131 (83.21%), Query Frame = 0


Query: 1    MDVKTTFLNGDLEEEIYMTQPEGFKIYDQENKVCKLRKSLYGLKQAPKQWYEKFNNTLIN 60
            MDVKT FLNGDL EEIYM QPEGF I  QENKVCKL KSLYGLKQAPKQW+EKF+NTL+ 
Sbjct: 916  MDVKTAFLNGDLHEEIYMMQPEGFIIEGQENKVCKLIKSLYGLKQAPKQWFEKFSNTLLE 975

Query: 61   NEFKVNSSDTCVYSKLFGADCILICLYVNDMLIFGTNMELINDTKLFLSSHFEMKDLGEA 120
            N F  N  DTCV+SK+     ++ICLYV+DMLI GT++E++ DTK+FLSS F+MKDLGEA
Sbjct: 976  NGFVSNEGDTCVFSKVHEHGYVIICLYVDDMLILGTSLEIVCDTKVFLSSKFDMKDLGEA 1035

Query: 121  NIILGVKIRKT 132
            ++ILG+K+ KT
Sbjct: 1036 DVILGIKVVKT 1046

[Close]

BLAST of Cmc01g0025231 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-31
Identity = 72/129 (55.81%), Postives = 92/129 (71.32%), Query Frame = 0


Query: 1    MDVKTTFLNGDLEEEIYMTQPEGFKIYDQENKVCKLRKSLYGLKQAPKQWYEKFNNTLIN 60
            +DVKT FL+GDLEEEIYM QPEGF++  +++ VCKL KSLYGLKQAP+QWY KF++ + +
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKS 980

Query: 61   NEFKVNSSDTCVYSKLFGA-DCILICLYVNDMLIFGTNMELINDTKLFLSSHFEMKDLGE 120
              +    SD CVY K F   + I++ LYV+DMLI G +  LI   K  LS  F+MKDLG 
Sbjct: 981  QTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGP 1040

Query: 121  ANIILGVKI 129
            A  ILG+KI
Sbjct: 1041 AQQILGMKI 1049

[Close]

BLAST of Cmc01g0025231 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.1e-22
Identity = 53/130 (40.77%), Postives = 81/130 (62.31%), Query Frame = 0


Query: 1    MDVKTTFLNGDLEEEIYMTQPEGFKIYDQENKVCKLRKSLYGLKQAPKQWYEKFNNTLIN 60
            +DV   FL G L +++YM+QP GF   D+ N VCKLRK+LYGLKQAP+ WY +  N L+ 
Sbjct: 1064 LDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLT 1123

Query: 61   NEFKVNSSDTCVYSKLFGADCILICLYVNDMLIFGTNMELINDTKLFLSSHFEMKDLGEA 120
              F  + SDT ++    G   + + +YV+D+LI G +  L+++T   LS  F +KD  E 
Sbjct: 1124 IGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEEL 1183

Query: 121  NIILGVKIRK 131
            +  LG++ ++
Sbjct: 1184 HYFLGIEAKR 1193

[Close]

BLAST of Cmc01g0025231 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-20
Identity = 57/130 (43.85%), Postives = 78/130 (60.00%), Query Frame = 0


Query: 1    MDVKTTFLNGDLEEEIYMTQPEGFKIYDQENKVCKLRKSLYGLKQAPKQWYEKFNNTLIN 60
            MDVKT FLNG L+EEIYM  P+G  I    + VCKL K++YGLKQA + W+E F   L  
Sbjct: 1001 MDVKTAFLNGTLKEEIYMRLPQG--ISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKE 1060

Query: 61   NEFKVNSSDTCVYSKLFG--ADCILICLYVNDMLIFGTNMELINDTKLFLSSHFEMKDLG 120
             EF  +S D C+Y    G   + I + LYV+D++I   +M  +N+ K +L   F M DL 
Sbjct: 1061 CEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLN 1120

Query: 121  EANIILGVKI 129
            E    +G++I
Sbjct: 1121 EIKHFIGIRI 1128

[Close]

BLAST of Cmc01g0025231 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-19
Identity = 49/130 (37.69%), Postives = 78/130 (60.00%), Query Frame = 0


Query: 1    MDVKTTFLNGDLEEEIYMTQPEGFKIYDQENKVCKLRKSLYGLKQAPKQWYEKFNNTLIN 60
            +DV   FL G L +E+YM+QP GF   D+ + VC+LRK++YGLKQAP+ WY +    L+ 
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLT 1106

Query: 61   NEFKVNSSDTCVYSKLFGADCILICLYVNDMLIFGTNMELINDTKLFLSSHFEMKDLGEA 120
              F  + SDT ++    G   I + +YV+D+LI G +  L+  T   LS  F +K+  + 
Sbjct: 1107 VGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDL 1166

Query: 121  NIILGVKIRK 131
            +  LG++ ++
Sbjct: 1167 HYFLGIEAKR 1176

[Close]

BLAST of Cmc01g0025231 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 82.8 bits (203), Expect = 3.5e-15
Identity = 47/131 (35.88%), Postives = 72/131 (54.96%), Query Frame = 0


Query: 1   MDVKTTFLNGDLEEEIYMTQPEGFKIYDQENKVCKLRKSLYGLKQAPKQWYEKFNNTLIN 60
           MDV T FLN  ++E IY+ QP GF      + V +L   +YGLKQAP  W E  NNTL  
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 61  NEFKVNSSDTCVYSKLFGADCILICLYVNDMLIFGTNMELINDTKLFLSSHFEMKDLGEA 120
             F  +  +  +Y +      I I +YV+D+L+   + ++ +  K  L+  + MKDLG+ 
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 121 NIILGVKIRKT 132
           +  LG+ I ++
Sbjct: 121 DKFLGLNIHQS 131

[Close]

BLAST of Cmc01g0025231 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.3e-60
Identity = 117/132 (88.64%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 1    MDVKTTFLNGDLEEEIYMTQPEGFKIYDQENKVCKLRKSLYGLKQAPKQWYEKFNNTLIN 60
            MDVKT FLNG+LEEEIYMTQPEGFKI  QENKVCKLRKSLYGLKQAPKQWYEKFNNTLI 
Sbjct: 944  MDVKTAFLNGNLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLIT 1003

Query: 61   NEFKVNSSDTCVYSKLFGADCILICLYVNDMLIFGTNMELINDTKLFLSSHFEMKDLGEA 120
            N FK+NSSDTCVYSK+ GADCILICLYV+DMLIFGTNMELI DTK FLSSHFEMKDLGEA
Sbjct: 1004 NGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKYFLSSHFEMKDLGEA 1063

Query: 121  NIILGVKIRKTK 133
            ++ILGVKIRK K
Sbjct: 1064 DVILGVKIRKNK 1075

[Close]

BLAST of Cmc01g0025231 vs. ExPASy TrEMBL
Match: A0A2N9EQT1 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4851 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 1.1e-46
Identity = 92/128 (71.88%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 1   MDVKTTFLNGDLEEEIYMTQPEGFKIYDQENKVCKLRKSLYGLKQAPKQWYEKFNNTLIN 60
           MDVKT FLNGDL+EEIYM QPEGF +  QENKVCKLRKSLYGLKQAPKQW+EKF+ TL++
Sbjct: 383 MDVKTAFLNGDLDEEIYMDQPEGFVVQGQENKVCKLRKSLYGLKQAPKQWHEKFDKTLVS 442

Query: 61  NEFKVNSSDTCVYSKLFGADCILICLYVNDMLIFGTNMELINDTKLFLSSHFEMKDLGEA 120
           N F VN SD CVYSK  GA  ++ICLYV+DMLIFGT+M  + +TK FLSS+F+MKDLGEA
Sbjct: 443 NGFAVNESDRCVYSKFSGASGVIICLYVDDMLIFGTDMNAVKNTKDFLSSNFDMKDLGEA 502

Query: 121 NIILGVKI 129
           ++ILG++I
Sbjct: 503 DLILGIRI 510

[Close]

BLAST of Cmc01g0025231 vs. ExPASy TrEMBL
Match: A0A2N9H4B0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37208 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 1.1e-46
Identity = 92/128 (71.88%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 1    MDVKTTFLNGDLEEEIYMTQPEGFKIYDQENKVCKLRKSLYGLKQAPKQWYEKFNNTLIN 60
            MDVKT FLNGDL+EEIYM QPEGF +  QENKVCKLRKSLYGLKQAPKQW+EKF+ TL++
Sbjct: 893  MDVKTAFLNGDLDEEIYMDQPEGFVVQGQENKVCKLRKSLYGLKQAPKQWHEKFDKTLVS 952

Query: 61   NEFKVNSSDTCVYSKLFGADCILICLYVNDMLIFGTNMELINDTKLFLSSHFEMKDLGEA 120
            N F VN SD CVYSK  GA  ++ICLYV+DMLIFGT+M  + +TK FLSS+F+MKDLGEA
Sbjct: 953  NGFAVNESDRCVYSKFSGASGVIICLYVDDMLIFGTDMNAVKNTKDFLSSNFDMKDLGEA 1012

Query: 121  NIILGVKI 129
            ++ILG++I
Sbjct: 1013 DLILGIRI 1020

[Close]

BLAST of Cmc01g0025231 vs. ExPASy TrEMBL
Match: A0A5D3BLH3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00320 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.8e-46
Identity = 91/132 (68.94%), Postives = 112/132 (84.85%), Query Frame = 0


Query: 1   MDVKTTFLNGDLEEEIYMTQPEGFKIYDQENKVCKLRKSLYGLKQAPKQWYEKFNNTLIN 60
           MDVKT FLNGDLEEE YM QPEGF +YDQE+KVCKL KSLYGLKQAPKQW+EKF+N L++
Sbjct: 1   MDVKTAFLNGDLEEENYMEQPEGFIVYDQESKVCKLGKSLYGLKQAPKQWHEKFDNLLMS 60

Query: 61  NEFKVNSSDTCVYSKLFGADCILICLYVNDMLIFGTNMELINDTKLFLSSHFEMKDLGEA 120
             FKVN SD C+Y K  G  CI+ICLYV+DMLIFG+N+ +IND K  LS++F+MKDLGEA
Sbjct: 61  KGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHIINDVKSMLSANFDMKDLGEA 120

Query: 121 NIILGVKIRKTK 133
           ++ILG++I +T+
Sbjct: 121 DVILGIRIIRTE 132

[Close]

BLAST of Cmc01g0025231 vs. ExPASy TrEMBL
Match: A0A5D3D4T4 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00450 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 3.1e-46
Identity = 91/132 (68.94%), Postives = 112/132 (84.85%), Query Frame = 0


Query: 1   MDVKTTFLNGDLEEEIYMTQPEGFKIYDQENKVCKLRKSLYGLKQAPKQWYEKFNNTLIN 60
           MDVKT FLNGDLEEEIYM QPEGF +++QE+KVCKL KSLYGLKQAPKQW+EKF+N L++
Sbjct: 1   MDVKTAFLNGDLEEEIYMEQPEGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMS 60

Query: 61  NEFKVNSSDTCVYSKLFGADCILICLYVNDMLIFGTNMELINDTKLFLSSHFEMKDLGEA 120
             FKVN SD C+Y K  G  CI+ICLYV+DMLIFG+N+ +IND K  LS +F+MKDLGEA
Sbjct: 61  KGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMKDLGEA 120

Query: 121 NIILGVKIRKTK 133
           ++ILG+KI +T+
Sbjct: 121 DVILGIKITRTE 132

[Close]

BLAST of Cmc01g0025231 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-21
Identity = 52/135 (38.52%), Postives = 81/135 (60.00%), Query Frame = 0


Query: 1   MDVKTTFLNGDLEEEIYMTQPEGFKIYDQE----NKVCKLRKSLYGLKQAPKQWYEKFNN 60
           +D+   FLNGDL+EEIYM  P G+     +    N VC L+KS+YGLKQA +QW+ KF+ 
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  TLINNEFKVNSSDTCVYSKLFGADCILICLYVNDMLIFGTNMELINDTKLFLSSHFEMKD 120
           TLI   F  + SD   + K+     + + +YV+D++I   N   +++ K  L S F+++D
Sbjct: 253 TLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRD 312

Query: 121 LGEANIILGVKIRKT 132
           LG     LG++I ++
Sbjct: 313 LGPLKYFLGLEIARS 327

[Close]

BLAST of Cmc01g0025231 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 41.2 bits (95), Expect = 8.4e-04
Identity = 20/46 (43.48%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 84  ICLYVNDMLIFGTNMELINDTKLFLSSHFEMKDLGEANIILGVKIR 130
           + LYV+D+L+ G++  L+N     LSS F MKDLG  +  LG++I+
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIK 48

The following BLAST results are available for this feature:

BLAST of Cmc01g0025231 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06518.1	2.7e-60	88.64	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_027936188.1	8.6e-51	75.00	uncharacterized protein LOC114191208 [Vigna unguiculata]	[more]
KAA0066068.1	3.7e-46	68.94	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0060459.1	6.3e-46	68.94	hypothetical protein E6C27_scaffold22G002870 [Cucumis melo var. makuwa] >TYK1854...	[more]
KAG7551885.1	7.0e-45	69.47	Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa]	[more]

BLAST of Cmc01g0025231 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.2e-31	55.81	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	5.1e-22	40.77	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	1.6e-20	43.85	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.1e-19	37.69	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P25600	3.5e-15	35.88	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc01g0025231 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5T2	1.3e-60	88.64	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A2N9EQT1	1.1e-46	71.88	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]
A0A2N9H4B0	1.1e-46	71.88	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37208 PE=4 SV=1	[more]
A0A5D3BLH3	1.8e-46	68.94	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3D4T4	3.1e-46	68.94	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]

BLAST of Cmc01g0025231 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.5e-21	38.52	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	8.4e-04	43.48	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..130 e-value: 3.6E-44 score: 151.2
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 1..129
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0025231.1	Cmc01g0025231.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding