Cmc01g0023701 (gene) Melon (Charmono) v1.1

Overview
NameCmc01g0023701
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
LocationCMiso1.1chr01: 23658065 .. 23659234 (-)
RNA-Seq ExpressionCmc01g0023701
SyntenyCmc01g0023701
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGAAGAGTTATTACAGTTCAAGCGTAACAACGTTTGGACTTTGGTTCCTAAACCTGATGTGGCGAACATCATAGGAACTAAGTGGATTTTTAAAAATAAAACTGATGAATCTGAGAGTGTAATAAGGAACAAGGCCCGTTTGGTGGCTCAAGGTTATGCACAGGTAAAAGGTGTTGATTTTAATAAAACTTTTGCACCTATGGCTAGACTTGAAACTATCCGCCTTTTGCTCAGTATATCATGTTTCCGAAAATTTAAATTGTTTCAAATGGACGTTAAAAGTGCCTTCCTGAATGGATACTTAAATGAGGAAGTCTATGTAGCACAACTTAAAAGGTTTGTTGATTCTGAATTTCCTCAGTATGTCTACAAGCTAAATAAAGCTCTATATGGGTTAAAGCAAGCTCCTCGGGCTTGGTATGAACAACTAACAATGTATCTTAGTGAAAGAGGATATTCCAGGGGTGAGACTGACAAGACACTATTCATAAATAGAACCAGCACTGGTCTCATTGTAGCTCAAATTTATGTTGATGACATCATCTTTGGTGGATTTCCTAAAACACTTGTTAATAATTTCATTAACATAATGAAATCAGAATTCGAAATGAGCCTAGTAGGTGAACTGTCCTGCTTTCTGGCATTGCAGATCAAACAGAGAAATGAGGGAATATTTATATCACAAGAGAAGTATGCCAAGAACTTAGTCAAGAAGTTTGGTCTGGATCATTCACAACACAAAAGGATTCCAGCTGCGACTCATGCTAAAATTACAAAGGATACGGTAGATAATGCAGTCGATCACAAATTGTACAGAAGCATGATTGGAAGCCTTTTATATTTGACAGCAAGCAGACCTGATATTGCCTATGTTGTGGGAATATGTGCTCGGTATCAGTCAGATCCACGTACCTCTCATTTAAATGCAGTTAAACGAATAATAAAGTATGTTCACCGAACAACTGATTTCGGGATTCTGTACTTCTACGATACATCTTCTGAACTAGTGGGATATTGTAATGCCGACTGGGCAGGTACTTCTACAAATAACCTCTTTACACTTAACCAAAGTCAATTATCAAGCCTTATTCTTCCTCGCCAACTTCAAGCCTTCAACTCTTCCATTTTTTCCACTTCTCTTGACCACCTAACAATGAACAAATAA

mRNA sequence

ATGCAAGAAGAGTTATTACAGTTCAAGCGTAACAACGTTTGGACTTTGGTTCCTAAACCTGATGTGGCGAACATCATAGGAACTAAGTGGATTTTTAAAAATAAAACTGATGAATCTGAGAGTGTAATAAGGAACAAGGCCCGTTTGGTGGCTCAAGGTTATGCACAGGTAAAAGGTGTTGATTTTAATAAAACTTTTGCACCTATGGCTAGACTTGAAACTATCCGCCTTTTGCTCAGTATATCATGTTTCCGAAAATTTAAATTGTTTCAAATGGACGTTAAAAGTGCCTTCCTGAATGGATACTTAAATGAGGAAGTCTATGTAGCACAACTTAAAAGGTTTGTTGATTCTGAATTTCCTCAGTATGTCTACAAGCTAAATAAAGCTCTATATGGGTTAAAGCAAGCTCCTCGGGCTTGGTATGAACAACTAACAATGTATCTTAGTGAAAGAGGATATTCCAGGGGTGAGACTGACAAGACACTATTCATAAATAGAACCAGCACTGGTCTCATTGTAGCTCAAATTTATGTTGATGACATCATCTTTGGTGGATTTCCTAAAACACTTGTTAATAATTTCATTAACATAATGAAATCAGAATTCGAAATGAGCCTAGTAGGTGAACTGTCCTGCTTTCTGGCATTGCAGATCAAACAGAGAAATGAGGGAATATTTATATCACAAGAGAAGTATGCCAAGAACTTAGTCAAGAAGTTTGGTCTGGATCATTCACAACACAAAAGGATTCCAGCTGCGACTCATGCTAAAATTACAAAGGATACGGTAGATAATGCAGTCGATCACAAATTGTACAGAAGCATGATTGGAAGCCTTTTATATTTGACAGCAAGCAGACCTGATATTGCCTATGTTGTGGGAATATGTGCTCGGTATCAGTCAGATCCACGTACCTCTCATTTAAATGCAGTTAAACGAATAATAAAGTATGTTCACCGAACAACTGATTTCGGGATTCTGTACTTCTACGATACATCTTCTGAACTAGTGGGATATTGTAATGCCGACTGGGCAGGTACTTCTACAAATAACCTCTTTACACTTAACCAAAGTCAATTATCAAGCCTTATTCTTCCTCGCCAACTTCAAGCCTTCAACTCTTCCATTTTTTCCACTTCTCTTGACCACCTAACAATGAACAAATAA

Coding sequence (CDS)

ATGCAAGAAGAGTTATTACAGTTCAAGCGTAACAACGTTTGGACTTTGGTTCCTAAACCTGATGTGGCGAACATCATAGGAACTAAGTGGATTTTTAAAAATAAAACTGATGAATCTGAGAGTGTAATAAGGAACAAGGCCCGTTTGGTGGCTCAAGGTTATGCACAGGTAAAAGGTGTTGATTTTAATAAAACTTTTGCACCTATGGCTAGACTTGAAACTATCCGCCTTTTGCTCAGTATATCATGTTTCCGAAAATTTAAATTGTTTCAAATGGACGTTAAAAGTGCCTTCCTGAATGGATACTTAAATGAGGAAGTCTATGTAGCACAACTTAAAAGGTTTGTTGATTCTGAATTTCCTCAGTATGTCTACAAGCTAAATAAAGCTCTATATGGGTTAAAGCAAGCTCCTCGGGCTTGGTATGAACAACTAACAATGTATCTTAGTGAAAGAGGATATTCCAGGGGTGAGACTGACAAGACACTATTCATAAATAGAACCAGCACTGGTCTCATTGTAGCTCAAATTTATGTTGATGACATCATCTTTGGTGGATTTCCTAAAACACTTGTTAATAATTTCATTAACATAATGAAATCAGAATTCGAAATGAGCCTAGTAGGTGAACTGTCCTGCTTTCTGGCATTGCAGATCAAACAGAGAAATGAGGGAATATTTATATCACAAGAGAAGTATGCCAAGAACTTAGTCAAGAAGTTTGGTCTGGATCATTCACAACACAAAAGGATTCCAGCTGCGACTCATGCTAAAATTACAAAGGATACGGTAGATAATGCAGTCGATCACAAATTGTACAGAAGCATGATTGGAAGCCTTTTATATTTGACAGCAAGCAGACCTGATATTGCCTATGTTGTGGGAATATGTGCTCGGTATCAGTCAGATCCACGTACCTCTCATTTAAATGCAGTTAAACGAATAATAAAGTATGTTCACCGAACAACTGATTTCGGGATTCTGTACTTCTACGATACATCTTCTGAACTAGTGGGATATTGTAATGCCGACTGGGCAGGTACTTCTACAAATAACCTCTTTACACTTAACCAAAGTCAATTATCAAGCCTTATTCTTCCTCGCCAACTTCAAGCCTTCAACTCTTCCATTTTTTCCACTTCTCTTGACCACCTAACAATGAACAAATAA

Protein sequence

MQEELLQFKRNNVWTLVPKPDVANIIGTKWIFKNKTDESESVIRNKARLVAQGYAQVKGVDFNKTFAPMARLETIRLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKRFVDSEFPQYVYKLNKALYGLKQAPRAWYEQLTMYLSERGYSRGETDKTLFINRTSTGLIVAQIYVDDIIFGGFPKTLVNNFINIMKSEFEMSLVGELSCFLALQIKQRNEGIFISQEKYAKNLVKKFGLDHSQHKRIPAATHAKITKDTVDNAVDHKLYRSMIGSLLYLTASRPDIAYVVGICARYQSDPRTSHLNAVKRIIKYVHRTTDFGILYFYDTSSELVGYCNADWAGTSTNNLFTLNQSQLSSLILPRQLQAFNSSIFSTSLDHLTMNK
Homology
[Close]
BLAST of Cmc01g0023701 vs. NCBI nr
Match: KAA0042206.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK26777.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 746.1 bits (1925), Expect = 1.5e-211
Identity = 376/389 (96.66%), Postives = 380/389 (97.69%), Query Frame = 0 

Query: 1    MQEELLQFKRNNVWTLVPKPDVANIIGTKWIFKNKTDESESVIRNKARLVAQGYAQVKGV 60
            MQEELLQFKRNN+WTLVPKPDVANIIGTKWIFKNKTDESESVIRN+ARLVAQGYAQVKGV
Sbjct: 767  MQEELLQFKRNNIWTLVPKPDVANIIGTKWIFKNKTDESESVIRNEARLVAQGYAQVKGV 826

Query: 61   DFNKTFAPMARLETIRLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKRFVDSEF 120
            DFNKTFAP+ARLE IRLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKRFVDSEF
Sbjct: 827  DFNKTFAPVARLEAIRLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKRFVDSEF 886

Query: 121  PQYVYKLNKALYGLKQAPRAWYEQLTMYLSERGYSRGETDKTLFINRTSTGLIVAQIYVD 180
            PQYVYK NKALYGLKQAPRAWYEQLTMYLSERGYSRGE DKTLFINRTST LIVAQIYVD
Sbjct: 887  PQYVYKQNKALYGLKQAPRAWYEQLTMYLSERGYSRGENDKTLFINRTSTCLIVAQIYVD 946

Query: 181  DIIFGGFPKTLVNNFINIMKSEFEMSLVGELSCFLALQIKQRNEGIFISQEKYAKNLVKK 240
            DIIFGGFPKTLVNNFINIMKSEFEMSLVGELSCFLALQIKQRNEGIFISQEKY KNLVKK
Sbjct: 947  DIIFGGFPKTLVNNFINIMKSEFEMSLVGELSCFLALQIKQRNEGIFISQEKYVKNLVKK 1006

Query: 241  FGLDHSQHKRIPAATHAKITKDTVDNAVDHKLYRSMIGSLLYLTASRPDIAYVVGICARY 300
            FGLDHSQHKRIPAATHAKI KDTVDNAVDHKLYRSMIGSLLYLTASRPDIAYVVGICARY
Sbjct: 1007 FGLDHSQHKRIPAATHAKIIKDTVDNAVDHKLYRSMIGSLLYLTASRPDIAYVVGICARY 1066

Query: 301  QSDPRTSHLNAVKRIIKYVHRTTDFGILYFYDTSSELVGYCNADWAGTSTNNLFTLNQSQ 360
            QS+PRTSHLNAVKRIIKYV RTTDFGILYFYDTSSELVGYCNADWAGTSTNNL TLNQSQ
Sbjct: 1067 QSNPRTSHLNAVKRIIKYVLRTTDFGILYFYDTSSELVGYCNADWAGTSTNNLSTLNQSQ 1126

Query: 361  LSSLILPRQLQAFNSSIFSTSLDHLTMNK 390
            LSSLILP QLQAFNSSIFSTSLDHLTMNK
Sbjct: 1127 LSSLILPHQLQAFNSSIFSTSLDHLTMNK 1155

[Close]
BLAST of Cmc01g0023701 vs. NCBI nr
Match: TYJ98295.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 608.2 bits (1567), Expect = 4.9e-170
Identity = 303/344 (88.08%), Postives = 322/344 (93.60%), Query Frame = 0 

Query: 1   MQEELLQFKRNNVWTLVPKPDVANIIGTKWIFKNKTDESESVIRNKARLVAQGYAQVKGV 60
           MQEELLQFK NNVWTLVPKPD ANIIGTKWIFKNKTDES SV+RNKA LVAQGYAQV+GV
Sbjct: 442 MQEELLQFKHNNVWTLVPKPDGANIIGTKWIFKNKTDESGSVVRNKACLVAQGYAQVEGV 501

Query: 61  DFNKTFAPMARLETIRLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKRFVDSEF 120
           DF++TFAP+ARLE IRLLL ISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQ K F+DSEF
Sbjct: 502 DFDETFAPVARLEAIRLLLRISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQPKGFIDSEF 561

Query: 121 PQYVYKLNKALYGLKQAPRAWYEQLTMYLSERGYSRGETDKTLFINRTSTGLIVAQIYVD 180
           PQYVYK+NKALYGLKQAPRAWYE+L +YL ERGYS+GETDKTLFINRTST LIVAQIYVD
Sbjct: 562 PQYVYKINKALYGLKQAPRAWYERLIIYLDERGYSKGETDKTLFINRTSTDLIVAQIYVD 621

Query: 181 DIIFGGFPKTLVNNFINIMKSEFEMSLVGELSCFLALQIKQRNEGIFISQEKYAKNLVKK 240
           DIIFGGFPKTLVNNFINI+KSEFE+SLVG+LS FL LQIKQR++G+FISQEKYAKNLVKK
Sbjct: 622 DIIFGGFPKTLVNNFINIIKSEFEISLVGKLSYFLGLQIKQRSKGMFISQEKYAKNLVKK 681

Query: 241 FGLDHSQHKRIPAATHAKITKDTVDNAVDHKLYRSMIGSLLYLTASRPDIAYVVGICARY 300
           FGLD SQ+KR  AATH KITKDTV  A+DHKLYRSMIGSLLYLTASRPDIAY VGICARY
Sbjct: 682 FGLDQSQYKRTLAATHVKITKDTVGTAIDHKLYRSMIGSLLYLTASRPDIAYAVGICARY 741

Query: 301 QSDPRTSHLNAVKRIIKYVHRTTDFGILYFYDTSSELVGYCNAD 345
           QSDPRTSHLNAVKRIIKYVH TTDFGILY YDTSSELVGYC+AD
Sbjct: 742 QSDPRTSHLNAVKRIIKYVHGTTDFGILYSYDTSSELVGYCDAD 785

[Close]
BLAST of Cmc01g0023701 vs. NCBI nr
Match: KAA0035705.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK30841.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 585.9 bits (1509), Expect = 2.6e-163
Identity = 293/360 (81.39%), Postives = 323/360 (89.72%), Query Frame = 0 

Query: 1   MQEELLQFKRNNVWTLVPKPDVANIIGTKWIFKNKTDESESVIRNKARLVAQGYAQVKGV 60
           MQEELLQFKRN+VWTLVPKPD ANIIGTKWIF+NKTDES  VIRN+ARLVAQGYAQV+GV
Sbjct: 80  MQEELLQFKRNDVWTLVPKPDGANIIGTKWIFRNKTDESGCVIRNRARLVAQGYAQVEGV 139

Query: 61  DFNKTFAPMARLETIRLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKRFVDSEF 120
            F++TFAP+ARLE I LLLS+S FRKFKL+QMD+KSAFLNGYLNEEVYVAQ K F+DSEF
Sbjct: 140 GFDETFAPVARLEAILLLLSVSYFRKFKLYQMDIKSAFLNGYLNEEVYVAQPKGFIDSEF 199

Query: 121 PQYVYKLNKALYGLKQAPRAWYEQLTMYLSERGYSRGETDKTLFINRTSTGLIVAQIYVD 180
           PQYVYKLNKALYGLKQAPRAWYE LTMYL ++GYS+GETDKTLFIN+T+  LIVAQIYVD
Sbjct: 200 PQYVYKLNKALYGLKQAPRAWYECLTMYLGKKGYSKGETDKTLFINKTNIDLIVAQIYVD 259

Query: 181 DIIFGGFPKTLVNNFINIMKSEFEMSLVGELSCFLALQIKQRNEGIFISQEKYAKNLVKK 240
           DIIFGGFPK LVNNFI+I+KSEFEMSLVGELS FL LQIKQR+EGIFISQEKYAKN+VKK
Sbjct: 260 DIIFGGFPKILVNNFIDIIKSEFEMSLVGELSYFLGLQIKQRSEGIFISQEKYAKNIVKK 319

Query: 241 FGLDHSQHKRIPAATHAKITKDTVDNAVDHKLYRSMIGSLLYLTASRPDIAYVVGICARY 300
           F LD SQ KR PAATHAKITKD++  AVDHKLYRSMIGSLLYL ASRPDI Y VGICARY
Sbjct: 320 FCLDQSQDKRTPAATHAKITKDSIGTAVDHKLYRSMIGSLLYLIASRPDIVYAVGICARY 379

Query: 301 QSDPRTSHLNAVKRIIKYVHRTTDFGILYFYDTSSELVGYCNADWAGTSTNNLFTLNQSQ 360
           QSDPR SHLNAVKRIIKYVH TT+F ILY YDTSSE V YC+ADWAG++ +   T  +++
Sbjct: 380 QSDPRISHLNAVKRIIKYVHGTTNFEILYSYDTSSEQVRYCDADWAGSADDRKSTSAEAE 439

[Close]
BLAST of Cmc01g0023701 vs. NCBI nr
Match: KAA0042877.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK05280.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 558.1 bits (1437), Expect = 5.8e-155
Identity = 294/388 (75.77%), Postives = 309/388 (79.64%), Query Frame = 0 

Query: 7   QFKRNNVWTLVPKPDVANIIGTKWIFKNKTDESESVIRNKARLVAQGYAQVKGVDFNKTF 66
           +FK NNVWTLVPKPD ANIIGTKWIFKNKTDES SVIRNKARLVAQGYAQV+GVD ++TF
Sbjct: 498 EFKCNNVWTLVPKPDEANIIGTKWIFKNKTDESGSVIRNKARLVAQGYAQVEGVDLDETF 557

Query: 67  APMARLETIRLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKRFVDSEFPQYVYK 126
           A +AR E I LL SI+CFRKFKLFQMDVKSAFLNGYLNEEVYVAQ + FVD EFPQYVYK
Sbjct: 558 ASVARFEAICLLFSIACFRKFKLFQMDVKSAFLNGYLNEEVYVAQPREFVDYEFPQYVYK 617

Query: 127 LNKALYGLKQAPRAWYEQLTMYLSERGYSRGETDKTLFINRTSTGLIVAQIYVDDIIFGG 186
           LNKALYGLKQAPRAWY+ LTMYL ERGYSRGETDKTLFINRTST LIVAQIYVDDIIFGG
Sbjct: 618 LNKALYGLKQAPRAWYKGLTMYLGERGYSRGETDKTLFINRTSTDLIVAQIYVDDIIFGG 677

Query: 187 FPKTLVNNFINIMKSEFEMSLVGELSCFLALQIKQRNEGIFISQEKYAKNLVKKFGLDHS 246
           FPKTLV   +   KSEFEMSLVGELSCFL LQIKQR+EGIFISQEKYAKNLVKKFGLD S
Sbjct: 678 FPKTLVIISLT-TKSEFEMSLVGELSCFLGLQIKQRSEGIFISQEKYAKNLVKKFGLDQS 737

Query: 247 QHKRIPAATHAKITKDT------------------------------------------- 306
           QHKR    THAKITKDT                                           
Sbjct: 738 QHKRTSTTTHAKITKDTVGVRVAKLSTQYAYHFGDKTEWGAENIITQDGIHSFPPLGVFI 797

Query: 307 --VDNAVDHKLYRSMIGSLLYLTASRPDIAYVVGICARYQSDPRTSHLNAVKRIIKYVHR 350
             V  AVDHK YRSMIGSLLYLTASRPDIAYVVGI ARYQS+PRTSHLNAVKRIIKYVH 
Sbjct: 798 SIVGTAVDHKWYRSMIGSLLYLTASRPDIAYVVGIYARYQSNPRTSHLNAVKRIIKYVHG 857

[Close]
BLAST of Cmc01g0023701 vs. NCBI nr
Match: KAA0053137.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK01543.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 550.8 bits (1418), Expect = 9.3e-153
Identity = 266/349 (76.22%), Postives = 309/349 (88.54%), Query Frame = 0 

Query: 1   MQEELLQFKRNNVWTLVPKPDVANIIGTKWIFKNKTDESESVIRNKARLVAQGYAQVKGV 60
           MQEELLQF+RNNVWTL+ KP+  N+IGTKWIFKNKTDE+  V +NKARLVAQGY QV+GV
Sbjct: 442 MQEELLQFRRNNVWTLLSKPEGVNVIGTKWIFKNKTDETGCVTKNKARLVAQGYTQVEGV 501

Query: 61  DFNKTFAPMARLETIRLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKRFVDSEF 120
           DF++TFAP+ARLE IRLLL ISC +KFKL+Q+DVKS FLNGYLNEEVYVAQ K FVDSE 
Sbjct: 502 DFDETFAPVARLEAIRLLLGISCIQKFKLYQIDVKSTFLNGYLNEEVYVAQPKGFVDSEH 561

Query: 121 PQYVYKLNKALYGLKQAPRAWYEQLTMYLSERGYSRGETDKTLFINRTSTGLIVAQIYVD 180
           P++VYKLNKALYGLKQA RAWY++LT+YL  RGYSRGE DK LFI+R S  L+VAQIYVD
Sbjct: 562 PKHVYKLNKALYGLKQALRAWYDRLTVYLRGRGYSRGEIDKILFIHRKSDQLLVAQIYVD 621

Query: 181 DIIFGGFPKTLVNNFINIMKSEFEMSLVGELSCFLALQIKQRNEGIFISQEKYAKNLVKK 240
           DIIFGGFP  L+NNFINIM+SEFEMS+VGELSCFL LQIKQ+N+GIFISQEKYA+N+VKK
Sbjct: 622 DIIFGGFPLDLINNFINIMQSEFEMSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKK 681

Query: 241 FGLDHSQHKRIPAATHAKITKDTVDNAVDHKLYRSMIGSLLYLTASRPDIAYVVGICARY 300
           FGL  +++KR PAATH K+TKDT    VDHKLYRS++GSLLYLTASRPDIAYVVGICARY
Sbjct: 682 FGLKQARNKRTPAATHVKLTKDTEGAEVDHKLYRSIVGSLLYLTASRPDIAYVVGICARY 741

Query: 301 QSDPRTSHLNAVKRIIKYVHRTTDFGILYFYDTSSELVGYCNADWAGTS 350
           Q+DPR + L  VKRI+KYVH T+DFG++Y YDT+S LVGYC+ADWAG++
Sbjct: 742 QADPRITQLEVVKRILKYVHGTSDFGMMYSYDTTSTLVGYCDADWAGSA 790

[Close]
BLAST of Cmc01g0023701 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 3.2e-63
Identity = 127/346 (36.71%), Postives = 203/346 (58.67%), Query Frame = 0 

Query: 11   NNVWTLVPKPDVA-NIIGTKWIFKNKTDESESVIRNKARLVAQGYAQVKGVDFNKTFAPM 70
            N+ W LVP P  +  I+G +WIF  K +   S+ R KARLVA+GY Q  G+D+ +TF+P+
Sbjct: 965  NHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPV 1024

Query: 71   ARLETIRLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKRFVDSEFPQYVYKLNK 130
             +  +IR++L ++  R + + Q+DV +AFL G L +EVY++Q   FVD + P YV +L K
Sbjct: 1025 IKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRK 1084

Query: 131  ALYGLKQAPRAWYEQLTMYLSERGYSRGETDKTLFINRTSTGLIVAQIYVDDIIFGGFPK 190
            A+YGLKQAPRAWY +L  YL   G+    +D +LF+ +    +I   +YVDDI+  G   
Sbjct: 1085 AIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDT 1144

Query: 191  TLVNNFINIMKSEFEMSLVGELSCFLALQIKQRNEGIFISQEKYAKNLVKKFGLDHSQHK 250
             L+ + ++ +   F +    +L  FL ++ K+  +G+ +SQ +Y  +L+ +  +  ++  
Sbjct: 1145 VLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPV 1204

Query: 251  RIPAATHAKITKDTVDNAVDHKLYRSMIGSLLYLTASRPDIAYVVGICARYQSDPRTSHL 310
              P AT  K+T  +     D   YR ++GSL YL  +RPD++Y V   ++Y   P   H 
Sbjct: 1205 ATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHW 1264

Query: 311  NAVKRIIKYVHRTTDFGILYFYDTSSELVGYCNADWAGTSTNNLFT 356
            NA+KR+++Y+  T D GI      +  L  Y +ADWAG + + + T
Sbjct: 1265 NALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVST 1310

[Close]
BLAST of Cmc01g0023701 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 4.6e-62
Identity = 127/346 (36.71%), Postives = 201/346 (58.09%), Query Frame = 0 

Query: 11   NNVWTLV-PKPDVANIIGTKWIFKNKTDESESVIRNKARLVAQGYAQVKGVDFNKTFAPM 70
            N+ W LV P P    I+G +WIF  K +   S+ R KARLVA+GY Q  G+D+ +TF+P+
Sbjct: 982  NHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPV 1041

Query: 71   ARLETIRLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKRFVDSEFPQYVYKLNK 130
             +  +IR++L ++  R + + Q+DV +AFL G L ++VY++Q   F+D + P YV KL K
Sbjct: 1042 IKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRK 1101

Query: 131  ALYGLKQAPRAWYEQLTMYLSERGYSRGETDKTLFINRTSTGLIVAQIYVDDIIFGGFPK 190
            ALYGLKQAPRAWY +L  YL   G+    +D +LF+ +    ++   +YVDDI+  G   
Sbjct: 1102 ALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDP 1161

Query: 191  TLVNNFINIMKSEFEMSLVGELSCFLALQIKQRNEGIFISQEKYAKNLVKKFGLDHSQHK 250
            TL++N ++ +   F +    EL  FL ++ K+   G+ +SQ +Y  +L+ +  +  ++  
Sbjct: 1162 TLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPV 1221

Query: 251  RIPAATHAKITKDTVDNAVDHKLYRSMIGSLLYLTASRPDIAYVVGICARYQSDPRTSHL 310
              P A   K++  +     D   YR ++GSL YL  +RPDI+Y V   +++   P   HL
Sbjct: 1222 TTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHL 1281

Query: 311  NAVKRIIKYVHRTTDFGILYFYDTSSELVGYCNADWAGTSTNNLFT 356
             A+KRI++Y+  T + GI      +  L  Y +ADWAG   + + T
Sbjct: 1282 QALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVST 1327

[Close]
BLAST of Cmc01g0023701 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 4.5e-57
Identity = 130/378 (34.39%), Postives = 214/378 (56.61%), Query Frame = 0 

Query: 1    MQEELLQFKRNNVWTLVPKPDVANIIGTKWIFKNKTDESESVIRNKARLVAQGYAQVKGV 60
            MQEE+   ++N  + LV  P     +  KW+FK K D    ++R KARLV +G+ Q KG+
Sbjct: 830  MQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGI 889

Query: 61   DFNKTFAPMARLETIRLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKRFVDSEF 120
            DF++ F+P+ ++ +IR +LS++     ++ Q+DVK+AFL+G L EE+Y+ Q + F  +  
Sbjct: 890  DFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGK 949

Query: 121  PQYVYKLNKALYGLKQAPRAWYEQLTMYLSERGYSRGETDKTLFINRTS-TGLIVAQIYV 180
               V KLNK+LYGLKQAPR WY +   ++  + Y +  +D  ++  R S    I+  +YV
Sbjct: 950  KHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYV 1009

Query: 181  DDIIFGGFPKTLVNNFINIMKSEFEMSLVGELSCFLALQI--KQRNEGIFISQEKYAKNL 240
            DD++  G  K L+      +   F+M  +G     L ++I  ++ +  +++SQEKY + +
Sbjct: 1010 DDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERV 1069

Query: 241  VKKFGLDHSQHKRIPAATHAKITKDTVDNAVDHK------LYRSMIGSLLY-LTASRPDI 300
            +++F + +++    P A H K++K      V+ K       Y S +GSL+Y +  +RPDI
Sbjct: 1070 LERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDI 1129

Query: 301  AYVVGICARYQSDPRTSHLNAVKRIIKYVHRTTDFGILYFYDTSSELVGYCNADWAG--- 360
            A+ VG+ +R+  +P   H  AVK I++Y+  TT    L F  +   L GY +AD AG   
Sbjct: 1130 AHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTG-DCLCFGGSDPILKGYTDADMAGDID 1189

Query: 361  ---TSTNNLFTLNQSQLS 363
               +ST  LFT +   +S
Sbjct: 1190 NRKSSTGYLFTFSGGAIS 1206

[Close]
BLAST of Cmc01g0023701 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 214.2 bits (544), Expect = 2.7e-54
Identity = 121/358 (33.80%), Postives = 204/358 (56.98%), Query Frame = 0 

Query: 4    ELLQFKRNNVWTLVPKPDVANIIGTKWIFKNKTDESESVIRNKARLVAQGYAQVKGVDFN 63
            EL   K NN WT+  +P+  NI+ ++W+F  K +E  + IR KARLVA+G+ Q   +D+ 
Sbjct: 913  ELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYE 972

Query: 64   KTFAPMARLETIRLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKRFVDSEFPQY 123
            +TFAP+AR+ + R +LS+      K+ QMDVK+AFLNG L EE+Y+ +L + +       
Sbjct: 973  ETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYM-RLPQGISCN-SDN 1032

Query: 124  VYKLNKALYGLKQAPRAWYEQLTMYLSERGYSRGETDKTLFI--NRTSTGLIVAQIYVDD 183
            V KLNKA+YGLKQA R W+E     L E  +     D+ ++I         I   +YVDD
Sbjct: 1033 VCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDD 1092

Query: 184  IIFGGFPKTLVNNFINIMKSEFEMSLVGELSCFLALQIKQRNEGIFISQEKYAKNLVKKF 243
            ++      T +NNF   +  +F M+ + E+  F+ ++I+ + + I++SQ  Y K ++ KF
Sbjct: 1093 VVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKF 1152

Query: 244  GLDHSQHKRIPAATHAKITKDTVDNAVD-HKLYRSMIGSLLY-LTASRPDIAYVVGICAR 303
             +++      P    +KI  + +++  D +   RS+IG L+Y +  +RPD+   V I +R
Sbjct: 1153 NMENCNAVSTPLP--SKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSR 1212

Query: 304  YQSDPRTSHLNAVKRIIKYVHRTTDFGILYFYDTSSE--LVGYCNADWAGTSTNNLFT 356
            Y S   +     +KR+++Y+  T D  +++  + + E  ++GY ++DWAG+  +   T
Sbjct: 1213 YSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKST 1266

[Close]
BLAST of Cmc01g0023701 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 135.6 bits (340), Expect = 1.2e-30
Identity = 77/254 (30.31%), Postives = 130/254 (51.18%), Query Frame = 0 

Query: 92  MDVKSAFLNGYLNEEVYVAQLKRFVDSEFPQYVYKLNKALYGLKQAPRAWYEQLTMYLSE 151
           MDV +AFLN  ++E +YV Q   FV+   P YV++L   +YGLKQAP  W E +   L +
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 152 RGYSRGETDKTLFINRTSTGLIVAQIYVDDIIFGGFPKTLVNNFINIMKSEFEMSLVGEL 211
            G+ R E +  L+   TS G I   +YVDD++       + +     +   + M  +G++
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 212 SCFLALQIKQRNEG-IFISQEKYAKNLVKKFGLDHSQHKRIPAATHAKITKDTVDNAVDH 271
             FL L I Q + G I +S + Y      +  ++  +  + P      + + T  +  D 
Sbjct: 121 DKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180

Query: 272 KLYRSMIGSLLY-LTASRPDIAYVVGICARYQSDPRTSHLNAVKRIIKYVHRTTDFGILY 331
             Y+S++G LL+     RPDI+Y V + +R+  +PR  HL + +R+++Y++ T    + Y
Sbjct: 181 TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKY 240

Query: 332 FYDTSSELVGYCNA 344
              +   L  YC+A
Sbjct: 241 RSGSQLALTVYCDA 254

[Close]
BLAST of Cmc01g0023701 vs. ExPASy TrEMBL
Match: A0A5D3DSN1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00770 PE=4 SV=1)

HSP 1 Score: 746.1 bits (1925), Expect = 7.3e-212
Identity = 376/389 (96.66%), Postives = 380/389 (97.69%), Query Frame = 0 

Query: 1    MQEELLQFKRNNVWTLVPKPDVANIIGTKWIFKNKTDESESVIRNKARLVAQGYAQVKGV 60
            MQEELLQFKRNN+WTLVPKPDVANIIGTKWIFKNKTDESESVIRN+ARLVAQGYAQVKGV
Sbjct: 767  MQEELLQFKRNNIWTLVPKPDVANIIGTKWIFKNKTDESESVIRNEARLVAQGYAQVKGV 826

Query: 61   DFNKTFAPMARLETIRLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKRFVDSEF 120
            DFNKTFAP+ARLE IRLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKRFVDSEF
Sbjct: 827  DFNKTFAPVARLEAIRLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKRFVDSEF 886

Query: 121  PQYVYKLNKALYGLKQAPRAWYEQLTMYLSERGYSRGETDKTLFINRTSTGLIVAQIYVD 180
            PQYVYK NKALYGLKQAPRAWYEQLTMYLSERGYSRGE DKTLFINRTST LIVAQIYVD
Sbjct: 887  PQYVYKQNKALYGLKQAPRAWYEQLTMYLSERGYSRGENDKTLFINRTSTCLIVAQIYVD 946

Query: 181  DIIFGGFPKTLVNNFINIMKSEFEMSLVGELSCFLALQIKQRNEGIFISQEKYAKNLVKK 240
            DIIFGGFPKTLVNNFINIMKSEFEMSLVGELSCFLALQIKQRNEGIFISQEKY KNLVKK
Sbjct: 947  DIIFGGFPKTLVNNFINIMKSEFEMSLVGELSCFLALQIKQRNEGIFISQEKYVKNLVKK 1006

Query: 241  FGLDHSQHKRIPAATHAKITKDTVDNAVDHKLYRSMIGSLLYLTASRPDIAYVVGICARY 300
            FGLDHSQHKRIPAATHAKI KDTVDNAVDHKLYRSMIGSLLYLTASRPDIAYVVGICARY
Sbjct: 1007 FGLDHSQHKRIPAATHAKIIKDTVDNAVDHKLYRSMIGSLLYLTASRPDIAYVVGICARY 1066

Query: 301  QSDPRTSHLNAVKRIIKYVHRTTDFGILYFYDTSSELVGYCNADWAGTSTNNLFTLNQSQ 360
            QS+PRTSHLNAVKRIIKYV RTTDFGILYFYDTSSELVGYCNADWAGTSTNNL TLNQSQ
Sbjct: 1067 QSNPRTSHLNAVKRIIKYVLRTTDFGILYFYDTSSELVGYCNADWAGTSTNNLSTLNQSQ 1126

Query: 361  LSSLILPRQLQAFNSSIFSTSLDHLTMNK 390
            LSSLILP QLQAFNSSIFSTSLDHLTMNK
Sbjct: 1127 LSSLILPHQLQAFNSSIFSTSLDHLTMNK 1155

[Close]
BLAST of Cmc01g0023701 vs. ExPASy TrEMBL
Match: A0A5D3BIP9 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G00070 PE=4 SV=1)

HSP 1 Score: 608.2 bits (1567), Expect = 2.4e-170
Identity = 303/344 (88.08%), Postives = 322/344 (93.60%), Query Frame = 0 

Query: 1   MQEELLQFKRNNVWTLVPKPDVANIIGTKWIFKNKTDESESVIRNKARLVAQGYAQVKGV 60
           MQEELLQFK NNVWTLVPKPD ANIIGTKWIFKNKTDES SV+RNKA LVAQGYAQV+GV
Sbjct: 442 MQEELLQFKHNNVWTLVPKPDGANIIGTKWIFKNKTDESGSVVRNKACLVAQGYAQVEGV 501

Query: 61  DFNKTFAPMARLETIRLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKRFVDSEF 120
           DF++TFAP+ARLE IRLLL ISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQ K F+DSEF
Sbjct: 502 DFDETFAPVARLEAIRLLLRISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQPKGFIDSEF 561

Query: 121 PQYVYKLNKALYGLKQAPRAWYEQLTMYLSERGYSRGETDKTLFINRTSTGLIVAQIYVD 180
           PQYVYK+NKALYGLKQAPRAWYE+L +YL ERGYS+GETDKTLFINRTST LIVAQIYVD
Sbjct: 562 PQYVYKINKALYGLKQAPRAWYERLIIYLDERGYSKGETDKTLFINRTSTDLIVAQIYVD 621

Query: 181 DIIFGGFPKTLVNNFINIMKSEFEMSLVGELSCFLALQIKQRNEGIFISQEKYAKNLVKK 240
           DIIFGGFPKTLVNNFINI+KSEFE+SLVG+LS FL LQIKQR++G+FISQEKYAKNLVKK
Sbjct: 622 DIIFGGFPKTLVNNFINIIKSEFEISLVGKLSYFLGLQIKQRSKGMFISQEKYAKNLVKK 681

Query: 241 FGLDHSQHKRIPAATHAKITKDTVDNAVDHKLYRSMIGSLLYLTASRPDIAYVVGICARY 300
           FGLD SQ+KR  AATH KITKDTV  A+DHKLYRSMIGSLLYLTASRPDIAY VGICARY
Sbjct: 682 FGLDQSQYKRTLAATHVKITKDTVGTAIDHKLYRSMIGSLLYLTASRPDIAYAVGICARY 741

Query: 301 QSDPRTSHLNAVKRIIKYVHRTTDFGILYFYDTSSELVGYCNAD 345
           QSDPRTSHLNAVKRIIKYVH TTDFGILY YDTSSELVGYC+AD
Sbjct: 742 QSDPRTSHLNAVKRIIKYVHGTTDFGILYSYDTSSELVGYCDAD 785

[Close]
BLAST of Cmc01g0023701 vs. ExPASy TrEMBL
Match: A0A5A7T2M1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00360 PE=4 SV=1)

HSP 1 Score: 585.9 bits (1509), Expect = 1.3e-163
Identity = 293/360 (81.39%), Postives = 323/360 (89.72%), Query Frame = 0 

Query: 1   MQEELLQFKRNNVWTLVPKPDVANIIGTKWIFKNKTDESESVIRNKARLVAQGYAQVKGV 60
           MQEELLQFKRN+VWTLVPKPD ANIIGTKWIF+NKTDES  VIRN+ARLVAQGYAQV+GV
Sbjct: 80  MQEELLQFKRNDVWTLVPKPDGANIIGTKWIFRNKTDESGCVIRNRARLVAQGYAQVEGV 139

Query: 61  DFNKTFAPMARLETIRLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKRFVDSEF 120
            F++TFAP+ARLE I LLLS+S FRKFKL+QMD+KSAFLNGYLNEEVYVAQ K F+DSEF
Sbjct: 140 GFDETFAPVARLEAILLLLSVSYFRKFKLYQMDIKSAFLNGYLNEEVYVAQPKGFIDSEF 199

Query: 121 PQYVYKLNKALYGLKQAPRAWYEQLTMYLSERGYSRGETDKTLFINRTSTGLIVAQIYVD 180
           PQYVYKLNKALYGLKQAPRAWYE LTMYL ++GYS+GETDKTLFIN+T+  LIVAQIYVD
Sbjct: 200 PQYVYKLNKALYGLKQAPRAWYECLTMYLGKKGYSKGETDKTLFINKTNIDLIVAQIYVD 259

Query: 181 DIIFGGFPKTLVNNFINIMKSEFEMSLVGELSCFLALQIKQRNEGIFISQEKYAKNLVKK 240
           DIIFGGFPK LVNNFI+I+KSEFEMSLVGELS FL LQIKQR+EGIFISQEKYAKN+VKK
Sbjct: 260 DIIFGGFPKILVNNFIDIIKSEFEMSLVGELSYFLGLQIKQRSEGIFISQEKYAKNIVKK 319

Query: 241 FGLDHSQHKRIPAATHAKITKDTVDNAVDHKLYRSMIGSLLYLTASRPDIAYVVGICARY 300
           F LD SQ KR PAATHAKITKD++  AVDHKLYRSMIGSLLYL ASRPDI Y VGICARY
Sbjct: 320 FCLDQSQDKRTPAATHAKITKDSIGTAVDHKLYRSMIGSLLYLIASRPDIVYAVGICARY 379

Query: 301 QSDPRTSHLNAVKRIIKYVHRTTDFGILYFYDTSSELVGYCNADWAGTSTNNLFTLNQSQ 360
           QSDPR SHLNAVKRIIKYVH TT+F ILY YDTSSE V YC+ADWAG++ +   T  +++
Sbjct: 380 QSDPRISHLNAVKRIIKYVHGTTNFEILYSYDTSSEQVRYCDADWAGSADDRKSTSAEAE 439

[Close]
BLAST of Cmc01g0023701 vs. ExPASy TrEMBL
Match: A0A5D3C1P5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00970 PE=4 SV=1)

HSP 1 Score: 558.1 bits (1437), Expect = 2.8e-155
Identity = 294/388 (75.77%), Postives = 309/388 (79.64%), Query Frame = 0 

Query: 7   QFKRNNVWTLVPKPDVANIIGTKWIFKNKTDESESVIRNKARLVAQGYAQVKGVDFNKTF 66
           +FK NNVWTLVPKPD ANIIGTKWIFKNKTDES SVIRNKARLVAQGYAQV+GVD ++TF
Sbjct: 498 EFKCNNVWTLVPKPDEANIIGTKWIFKNKTDESGSVIRNKARLVAQGYAQVEGVDLDETF 557

Query: 67  APMARLETIRLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKRFVDSEFPQYVYK 126
           A +AR E I LL SI+CFRKFKLFQMDVKSAFLNGYLNEEVYVAQ + FVD EFPQYVYK
Sbjct: 558 ASVARFEAICLLFSIACFRKFKLFQMDVKSAFLNGYLNEEVYVAQPREFVDYEFPQYVYK 617

Query: 127 LNKALYGLKQAPRAWYEQLTMYLSERGYSRGETDKTLFINRTSTGLIVAQIYVDDIIFGG 186
           LNKALYGLKQAPRAWY+ LTMYL ERGYSRGETDKTLFINRTST LIVAQIYVDDIIFGG
Sbjct: 618 LNKALYGLKQAPRAWYKGLTMYLGERGYSRGETDKTLFINRTSTDLIVAQIYVDDIIFGG 677

Query: 187 FPKTLVNNFINIMKSEFEMSLVGELSCFLALQIKQRNEGIFISQEKYAKNLVKKFGLDHS 246
           FPKTLV   +   KSEFEMSLVGELSCFL LQIKQR+EGIFISQEKYAKNLVKKFGLD S
Sbjct: 678 FPKTLVIISLT-TKSEFEMSLVGELSCFLGLQIKQRSEGIFISQEKYAKNLVKKFGLDQS 737

Query: 247 QHKRIPAATHAKITKDT------------------------------------------- 306
           QHKR    THAKITKDT                                           
Sbjct: 738 QHKRTSTTTHAKITKDTVGVRVAKLSTQYAYHFGDKTEWGAENIITQDGIHSFPPLGVFI 797

Query: 307 --VDNAVDHKLYRSMIGSLLYLTASRPDIAYVVGICARYQSDPRTSHLNAVKRIIKYVHR 350
             V  AVDHK YRSMIGSLLYLTASRPDIAYVVGI ARYQS+PRTSHLNAVKRIIKYVH 
Sbjct: 798 SIVGTAVDHKWYRSMIGSLLYLTASRPDIAYVVGIYARYQSNPRTSHLNAVKRIIKYVHG 857

[Close]
BLAST of Cmc01g0023701 vs. ExPASy TrEMBL
Match: A0A5D3BPB3 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001130 PE=4 SV=1)

HSP 1 Score: 550.8 bits (1418), Expect = 4.5e-153
Identity = 266/349 (76.22%), Postives = 309/349 (88.54%), Query Frame = 0 

Query: 1   MQEELLQFKRNNVWTLVPKPDVANIIGTKWIFKNKTDESESVIRNKARLVAQGYAQVKGV 60
           MQEELLQF+RNNVWTL+ KP+  N+IGTKWIFKNKTDE+  V +NKARLVAQGY QV+GV
Sbjct: 442 MQEELLQFRRNNVWTLLSKPEGVNVIGTKWIFKNKTDETGCVTKNKARLVAQGYTQVEGV 501

Query: 61  DFNKTFAPMARLETIRLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKRFVDSEF 120
           DF++TFAP+ARLE IRLLL ISC +KFKL+Q+DVKS FLNGYLNEEVYVAQ K FVDSE 
Sbjct: 502 DFDETFAPVARLEAIRLLLGISCIQKFKLYQIDVKSTFLNGYLNEEVYVAQPKGFVDSEH 561

Query: 121 PQYVYKLNKALYGLKQAPRAWYEQLTMYLSERGYSRGETDKTLFINRTSTGLIVAQIYVD 180
           P++VYKLNKALYGLKQA RAWY++LT+YL  RGYSRGE DK LFI+R S  L+VAQIYVD
Sbjct: 562 PKHVYKLNKALYGLKQALRAWYDRLTVYLRGRGYSRGEIDKILFIHRKSDQLLVAQIYVD 621

Query: 181 DIIFGGFPKTLVNNFINIMKSEFEMSLVGELSCFLALQIKQRNEGIFISQEKYAKNLVKK 240
           DIIFGGFP  L+NNFINIM+SEFEMS+VGELSCFL LQIKQ+N+GIFISQEKYA+N+VKK
Sbjct: 622 DIIFGGFPLDLINNFINIMQSEFEMSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKK 681

Query: 241 FGLDHSQHKRIPAATHAKITKDTVDNAVDHKLYRSMIGSLLYLTASRPDIAYVVGICARY 300
           FGL  +++KR PAATH K+TKDT    VDHKLYRS++GSLLYLTASRPDIAYVVGICARY
Sbjct: 682 FGLKQARNKRTPAATHVKLTKDTEGAEVDHKLYRSIVGSLLYLTASRPDIAYVVGICARY 741

Query: 301 QSDPRTSHLNAVKRIIKYVHRTTDFGILYFYDTSSELVGYCNADWAGTS 350
           Q+DPR + L  VKRI+KYVH T+DFG++Y YDT+S LVGYC+ADWAG++
Sbjct: 742 QADPRITQLEVVKRILKYVHGTSDFGMMYSYDTTSTLVGYCDADWAGSA 790

[Close]
BLAST of Cmc01g0023701 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 211.1 bits (536), Expect = 1.6e-54
Identity = 119/349 (34.10%), Postives = 193/349 (55.30%), Query Frame = 0 

Query: 1   MQEELLQFKRNNVWTLVPKPDVANIIGTKWIFKNKTDESESVIRNKARLVAQGYAQVKGV 60
           M +E+   +  + W +   P     IG KW++K K +   ++ R KARLVA+GY Q +G+
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGI 161

Query: 61  DFNKTFAPMARLETIRLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYV----AQLKRFV 120
           DF +TF+P+ +L +++L+L+IS    F L Q+D+ +AFLNG L+EE+Y+        R  
Sbjct: 162 DFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQG 221

Query: 121 DSEFPQYVYKLNKALYGLKQAPRAWYEQLTMYLSERGYSRGETDKTLFINRTSTGLIVAQ 180
           DS  P  V  L K++YGLKQA R W+ + ++ L   G+ +  +D T F+  T+T  +   
Sbjct: 222 DSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVL 281

Query: 181 IYVDDIIFGGFPKTLVNNFINIMKSEFEMSLVGELSCFLALQIKQRNEGIFISQEKYAKN 240
           +YVDDII        V+   + +KS F++  +G L  FL L+I +   GI I Q KYA +
Sbjct: 282 VYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALD 341

Query: 241 LVKKFGLDHSQHKRIPAATHAKITKDTVDNAVDHKLYRSMIGSLLYLTASRPDIAYVVGI 300
           L+ + GL   +   +P       +  +  + VD K YR +IG L+YL  +R DI++ V  
Sbjct: 342 LLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNK 401

Query: 301 CARYQSDPRTSHLNAVKRIIKYVHRTTDFGILYFYDTSSELVGYCNADW 346
            +++   PR +H  AV +I+ Y+  T   G+ Y      +L  + +A +
Sbjct: 402 LSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASF 450

[Close]
BLAST of Cmc01g0023701 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 107.1 bits (266), Expect = 3.3e-23
Identity = 60/180 (33.33%), Postives = 96/180 (53.33%), Query Frame = 0 

Query: 177 IYVDDIIFGGFPKTLVNNFINIMKSEFEMSLVGELSCFLALQIKQRNEGIFISQEKYAKN 236
           +YVDDI+  G   TL+N  I  + S F M  +G +  FL +QIK    G+F+SQ KYA+ 
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 237 LVKKFGLDHSQHKRIPAATHAKITKDTVDNAVDHKLYRSMIGSLLYLTASRPDIAYVVGI 296
           ++   G+   +    P       +  T     D   +RS++G+L YLT +RPDI+Y V I
Sbjct: 65  ILNNAGMLDCKPMSTPLPLKLNSSVSTA-KYPDPSDFRSIVGALQYLTLTRPDISYAVNI 124

Query: 297 CARYQSDPRTSHLNAVKRIIKYVHRTTDFGILYFYDTSSELVGYCNADWAG-TSTNNLFT 356
             +   +P  +  + +KR+++YV  T   G+    ++   +  +C++DWAG TST    T
Sbjct: 125 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTT 183

[Close]
BLAST of Cmc01g0023701 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 80.5 bits (197), Expect = 3.3e-15
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 0 

Query: 1   MQEELLQFKRNNVWTLVPKPDVANIIGTKWIFKNKTDESESVIRNKARLVAQGYAQVKGV 60
           MQEEL    RN  W LVP P   NI+G KW+FK K     ++ R KARLVA+G+ Q +G+
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103

Query: 61  DFNKTFAPMARLETIRLLLSIS 83
            F +T++P+ R  TIR +L+++
Sbjct: 104 YFVETYSPVVRTATIRTILNVA 125

[Close]
BLAST of Cmc01g0023701 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 51.6 bits (122), Expect = 1.6e-06
Identity = 21/66 (31.82%), Postives = 39/66 (59.09%), Query Frame = 0 

Query: 281 LYLTASRPDIAYVVGICARYQSDPRTSHLNAVKRIIKYVHRTTDFGILYFYDTSSELVGY 340
           +YLT +RPD+ + V   +++ S  RT+ + AV +++ YV  T   G+ Y   +  +L  +
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 341 CNADWA 347
            ++DWA
Sbjct: 61  ADSDWA 66

The following BLAST results are available for this feature:
BLAST of Cmc01g0023701 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0042206.11.5e-21196.66gag-pol polyprotein [Cucumis melo var. makuwa] >TYK26777.1 gag-pol polyprotein [... [more]
TYJ98295.14.9e-17088.08gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0035705.12.6e-16381.39gag-pol polyprotein [Cucumis melo var. makuwa] >TYK30841.1 gag-pol polyprotein [... [more]
KAA0042877.15.8e-15575.77gag-pol polyprotein [Cucumis melo var. makuwa] >TYK05280.1 gag-pol polyprotein [... [more]
KAA0053137.19.3e-15376.22gag-pol polyprotein [Cucumis melo var. makuwa] >TYK01543.1 gag-pol polyprotein [... [more]
BLAST of Cmc01g0023701 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZT943.2e-6336.71Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW24.6e-6236.71Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
P109784.5e-5734.39Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041462.7e-5433.80Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P256001.2e-3030.31Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT... [more]
BLAST of Cmc01g0023701 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DSN17.3e-21296.66Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G... [more]
A0A5D3BIP92.4e-17088.08Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G... [more]
A0A5A7T2M11.3e-16381.39Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G... [more]
A0A5D3C1P52.8e-15575.77Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G... [more]
A0A5D3BPB34.5e-15376.22Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G... [more]
BLAST of Cmc01g0023701 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G23160.11.6e-5434.10cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00810.13.3e-2333.33DNA/RNA polymerases superfamily protein [more]
ATMG00820.13.3e-1546.34Reverse transcriptase (RNA-dependent DNA polymerase) [more]
ATMG00240.11.6e-0631.82Gag-Pol-related retrotransposon family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 11..253
e-value: 3.9E-68
score: 229.7
NoneNo IPR availablePANTHERPTHR11439:SF351CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8coord: 1..263
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..263
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 10..351

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc01g0023701.1Cmc01g0023701.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding