Cmc01g0020111 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0020111
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr01: 18158092 .. 18158667 (+)
RNA-Seq Expression	Cmc01g0020111
Synteny	Cmc01g0020111

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTACTAGTCAAAAAGAAATATAGGAGCTGGTGGCGCTTTTGTGTAGATTACATAGCACTGAATAATGTGACTATACCAGACAAAATTTCCATACTTCTCATTGAGGAGTTATTCGACAAATTGAATGAAGCATCCTTGTTTTCCATTGATTTAAAAGCCGGTTATCACCAAATACGCATGAGTGAGAATGATATAGAGAAAACAACATTTCGAACACATGAAGGACACTATATGTTCTTAGTTATGTCGTTTGGGCTAACTAATGCACCAGCCACATTTCAGTCCTCAATGAATGTGTTATTCCGGCCACACTTGAGGAAGTTTGTGTTAGTCTTTTTTAACGACATACTGAGCCTAGAAGAACACTTAAAGCATTTAGAAATAATGTTAACAACATTAAGGGAGCACGAGCTCTATGTGAATAAAAAGAAATGTAAGTTTGCAAAATCAAGAGTAGAGTACTTGTGGCACATAATTTTAGGGCAAAGAGTTGAAGTGGACCCCGAAAAGATCAAATCTATTGCAGAATGGCTAAGTCCCATTAATGTTAGAGAGGTGCATGGATTTTTTTAG

mRNA sequence

ATGCTACTAGTCAAAAAGAAATATAGGAGCTGGTGGCGCTTTTGTGTAGATTACATAGCACTGAATAATGTGACTATACCAGACAAAATTTCCATACTTCTCATTGAGGAGTTATTCGACAAATTGAATGAAGCATCCTTGTTTTCCATTGATTTAAAAGCCGGTTATCACCAAATACGCATGAGTGAGAATGATATAGAGAAAACAACATTTCGAACACATGAAGGACACTATATGTTCTTAGTTATGTCGTTTGGGCTAACTAATGCACCAGCCACATTTCAGTCCTCAATGAATGTGTTATTCCGGCCACACTTGAGGAAGTTTGTGTTAGTCTTTTTTAACGACATACTGAGCCTAGAAGAACACTTAAAGCATTTAGAAATAATGTTAACAACATTAAGGGAGCACGAGCTCTATGTGAATAAAAAGAAATGTAAGTTTGCAAAATCAAGAGTAGAGTACTTGTGGCACATAATTTTAGGGCAAAGAGTTGAAGTGGACCCCGAAAAGATCAAATCTATTGCAGAATGGCTAAGTCCCATTAATGTTAGAGAGGTGCATGGATTTTTTTAG

Coding sequence (CDS)

ATGCTACTAGTCAAAAAGAAATATAGGAGCTGGTGGCGCTTTTGTGTAGATTACATAGCACTGAATAATGTGACTATACCAGACAAAATTTCCATACTTCTCATTGAGGAGTTATTCGACAAATTGAATGAAGCATCCTTGTTTTCCATTGATTTAAAAGCCGGTTATCACCAAATACGCATGAGTGAGAATGATATAGAGAAAACAACATTTCGAACACATGAAGGACACTATATGTTCTTAGTTATGTCGTTTGGGCTAACTAATGCACCAGCCACATTTCAGTCCTCAATGAATGTGTTATTCCGGCCACACTTGAGGAAGTTTGTGTTAGTCTTTTTTAACGACATACTGAGCCTAGAAGAACACTTAAAGCATTTAGAAATAATGTTAACAACATTAAGGGAGCACGAGCTCTATGTGAATAAAAAGAAATGTAAGTTTGCAAAATCAAGAGTAGAGTACTTGTGGCACATAATTTTAGGGCAAAGAGTTGAAGTGGACCCCGAAAAGATCAAATCTATTGCAGAATGGCTAAGTCCCATTAATGTTAGAGAGGTGCATGGATTTTTTTAG

Protein sequence

MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFSIDLKAGYHQIRMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMNVLFRPHLRKFVLVFFNDILSLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVREVHGFF

Homology

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BLAST of Cmc01g0020111 vs. NCBI nr
Match: KAA0040958.1 (peroxidase 64 [Cucumis melo var. makuwa] >TYK20299.1 peroxidase 64 [Cucumis melo var. makuwa])

HSP 1 Score: 263.8 bits (673), Expect = 1.1e-66
Identity = 136/195 (69.74%), Postives = 157/195 (80.51%), Query Frame = 0


Query: 1   MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQI 60
           +LLVKKK  S WRFCVDY A+NN T+PDK  I ++EELFD+LN ASLFS  DLK+GYHQI
Sbjct: 451 VLLVKKKDGS-WRFCVDYRAVNNATVPDKFPISVVEELFDELNGASLFSKNDLKSGYHQI 510

Query: 61  RMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMNVLFRPHLRKFVLVFFNDIL- 120
           RM E DI KT FRTHEGHY FLVM FGLTNAPATFQ+ MN +FRP+LRKFVLVFF+DIL 
Sbjct: 511 RMEEKDIPKTAFRTHEGHYKFLVMPFGLTNAPATFQALMNNVFRPYLRKFVLVFFDDILV 570

Query: 121 ---SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSI 180
              + EEH+ HL  +L+TLREH LY NKKKC FA+S++EYL HII G  VEVDPEKI+SI
Sbjct: 571 YSKNEEEHMNHLGKILSTLREHTLYANKKKCSFAQSKIEYLGHIISGGGVEVDPEKIRSI 630

Query: 181 AEWLSPINVREVHGF 191
           A+W  P NVRE+ GF
Sbjct: 631 ADWPIPTNVREIWGF 644

[Close]

BLAST of Cmc01g0020111 vs. NCBI nr
Match: KAA0052233.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 263.5 bits (672), Expect = 1.5e-66
Identity = 134/195 (68.72%), Postives = 156/195 (80.00%), Query Frame = 0


Query: 1   MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQI 60
           +LLVKKK  S WRFCVDY ALNNVT+PDK  I ++EELFD+L  ASLF+ IDLKAGYHQI
Sbjct: 25  VLLVKKKDGS-WRFCVDYRALNNVTVPDKFPIPVVEELFDELGGASLFTKIDLKAGYHQI 84

Query: 61  RMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMNVLFRPHLRKFVLVFFNDIL- 120
           RM + DIEKT FRTHEGHY FLVMSFGLTNAPATFQS MN +FRP+LRKFVLVFF+DIL 
Sbjct: 85  RMVDGDIEKTAFRTHEGHYEFLVMSFGLTNAPATFQSLMNSIFRPYLRKFVLVFFDDILI 144

Query: 121 ---SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSI 180
              + E+HLKH+EI+   LR+HEL+ N+KKC F  ++VEYL H+I  + VEVDPEKIK+I
Sbjct: 145 YSRNWEDHLKHMEIVFLVLRKHELFANRKKCSFGLAKVEYLGHLISNKGVEVDPEKIKAI 204

Query: 181 AEWLSPINVREVHGF 191
             W  P NVRE  GF
Sbjct: 205 TNWPKPTNVRETRGF 218

[Close]

BLAST of Cmc01g0020111 vs. NCBI nr
Match: KAA0065392.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 261.5 bits (667), Expect = 5.5e-66
Identity = 133/195 (68.21%), Postives = 155/195 (79.49%), Query Frame = 0


Query: 1   MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQI 60
           +LLVKKK  S WRFCVDY ALNNVT+PDK  I ++EELFD+L  ASLF+ IDLKAGYHQI
Sbjct: 672 VLLVKKKDGS-WRFCVDYRALNNVTVPDKFPIPVVEELFDELGGASLFTKIDLKAGYHQI 731

Query: 61  RMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMNVLFRPHLRKFVLVFFNDIL- 120
           RM + DIEKT FRTHEGHY FLVM FGLTNAPATFQS MN +FRP+LRKFVLVFF+DIL 
Sbjct: 732 RMVDGDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRPYLRKFVLVFFDDILI 791

Query: 121 ---SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSI 180
              + E+HLKH+EI+   LR+HEL+ N+KKC F  ++VEYL H+I  + VEVDPEKIK+I
Sbjct: 792 YSRNWEDHLKHMEIVFLVLRKHELFANRKKCSFGLAKVEYLGHLISNKGVEVDPEKIKAI 851

Query: 181 AEWLSPINVREVHGF 191
             W  P NVRE  GF
Sbjct: 852 TNWPKPTNVRETRGF 865

[Close]

BLAST of Cmc01g0020111 vs. NCBI nr
Match: KAA0048423.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 261.5 bits (667), Expect = 5.5e-66
Identity = 133/195 (68.21%), Postives = 155/195 (79.49%), Query Frame = 0


Query: 1   MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQI 60
           +LLVKKK  S WRFCVDY ALNNVT+PDK  I ++EELFD+L  ASLF+ IDLKAGYHQI
Sbjct: 672 VLLVKKKDGS-WRFCVDYRALNNVTVPDKFPIPVVEELFDELGGASLFTKIDLKAGYHQI 731

Query: 61  RMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMNVLFRPHLRKFVLVFFNDIL- 120
           RM + DIEKT FRTHEGHY FLVM FGLTNAPATFQS MN +FRP+LRKFVLVFF+DIL 
Sbjct: 732 RMVDGDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRPYLRKFVLVFFDDILI 791

Query: 121 ---SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSI 180
              + E+HLKH+EI+   LR+HEL+ N+KKC F  ++VEYL H+I  + VEVDPEKIK+I
Sbjct: 792 YSRNWEDHLKHMEIVFLVLRKHELFANRKKCSFGLAKVEYLGHLISNKGVEVDPEKIKAI 851

Query: 181 AEWLSPINVREVHGF 191
             W  P NVRE  GF
Sbjct: 852 TNWPKPTNVRETRGF 865

[Close]

BLAST of Cmc01g0020111 vs. NCBI nr
Match: TYK30083.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 261.5 bits (667), Expect = 5.5e-66
Identity = 133/195 (68.21%), Postives = 155/195 (79.49%), Query Frame = 0


Query: 1   MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQI 60
           +LLVKKK  S WRFCVDY ALNNVT+PDK  I ++EELFD+L  ASLF+ IDLKAGYHQI
Sbjct: 672 VLLVKKKDGS-WRFCVDYRALNNVTVPDKFPIPVVEELFDELGGASLFTKIDLKAGYHQI 731

Query: 61  RMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMNVLFRPHLRKFVLVFFNDIL- 120
           RM + DIEKT FRTHEGHY FLVM FGLTNAPATFQS MN +FRP+LRKFVLVFF+DIL 
Sbjct: 732 RMVDGDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRPYLRKFVLVFFDDILI 791

Query: 121 ---SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSI 180
              + E+HLKH+EI+   LR+HEL+ N+KKC F  ++VEYL H+I  + VEVDPEKIK+I
Sbjct: 792 YSRNWEDHLKHMEIVFLVLRKHELFANRKKCSFGLAKVEYLGHLISNKGVEVDPEKIKAI 851

Query: 181 AEWLSPINVREVHGF 191
             W  P NVRE  GF
Sbjct: 852 TNWPKPTNVRETRGF 865

[Close]

BLAST of Cmc01g0020111 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.2e-33
Identity = 75/184 (40.76%), Postives = 107/184 (58.15%), Query Frame = 0


Query: 12  WRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLF-SIDLKAGYHQIRMSENDIEKTT 71
           +R  +DY  LN +TIPD+  I  ++E+  KL +   F +IDL  G+HQI M E  I KT 
Sbjct: 261 YRVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTA 320

Query: 72  FRTHEGHYMFLVMSFGLTNAPATFQSSMNVLFRPHLRKFVLVFFNDIL----SLEEHLKH 131
           F T  GHY +L M FGL NAPATFQ  MN + RP L K  LV+ +DI+    SL EHL  
Sbjct: 321 FSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNS 380

Query: 132 LEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVRE 191
           ++++ T L +  L +   KC+F K    +L HI+    ++ +P K+K+I  +  P   +E
Sbjct: 381 IQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKE 440

[Close]

BLAST of Cmc01g0020111 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 7.8e-31
Identity = 71/184 (38.59%), Postives = 107/184 (58.15%), Query Frame = 0


Query: 12  WRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLF-SIDLKAGYHQIRMSENDIEKTT 71
           +R  +DY  LN +T+ D+  I  ++E+  KL   + F +IDL  G+HQI M    + KT 
Sbjct: 262 FRIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTA 321

Query: 72  FRTHEGHYMFLVMSFGLTNAPATFQSSMNVLFRPHLRKFVLVFFNDIL----SLEEHLKH 131
           F T  GHY +L M FGL NAPATFQ  MN + RP L K  LV+ +DI+    SL+EHL+ 
Sbjct: 322 FSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQS 381

Query: 132 LEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVRE 191
           L ++   L +  L +   KC+F K    +L H++    ++ +PEKI++I ++  P   +E
Sbjct: 382 LGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKE 441

[Close]

BLAST of Cmc01g0020111 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.9e-29
Identity = 72/184 (39.13%), Postives = 108/184 (58.70%), Query Frame = 0


Query: 12  WRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLF-SIDLKAGYHQIRMSENDIEKTT 71
           +R  VD+  LN VTIPD   I  I      L  A  F ++DL +G+HQI M E+DI KT 
Sbjct: 178 YRMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTA 237

Query: 72  FRTHEGHYMFLVMSFGLTNAPATFQSSMNVLFRPHLRKFVLVFFNDILSLEE----HLKH 131
           F T  G Y FL + FGL NAPA FQ  ++ + R H+ K   V+ +DI+   E    H K+
Sbjct: 238 FSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKN 297

Query: 132 LEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSIAEWLSPINVRE 191
           L ++L +L +  L VN +K  F  ++VE+L +I+    ++ DP+K+++I+E   P +V+E
Sbjct: 298 LRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKE 357

[Close]

BLAST of Cmc01g0020111 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 127.1 bits (318), Expect = 2.1e-28
Identity = 79/195 (40.51%), Postives = 108/195 (55.38%), Query Frame = 0


Query: 1   MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLF-SIDLKAGYHQI 60
           ++LV KK    +R CVDY  LN  TI D   +  I+ L  ++  A +F ++DL +GYHQI
Sbjct: 636 VVLVPKK-DGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQI 695

Query: 61  RMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMNVLFRPHLRKFVLVFFNDIL- 120
            M   D  KT F T  G Y + VM FGL NAP+TF   M   FR    +FV V+ +DIL 
Sbjct: 696 PMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRD--LRFVNVYLDDILI 755

Query: 121 ---SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSI 180
              S EEH KHL+ +L  L+   L V KKKCKFA    E+L + I  Q++     K  +I
Sbjct: 756 FSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAI 815

Query: 181 AEWLSPINVREVHGF 191
            ++ +P  V++   F
Sbjct: 816 RDFPTPKTVKQAQRF 827

[Close]

BLAST of Cmc01g0020111 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 127.1 bits (318), Expect = 2.1e-28
Identity = 79/195 (40.51%), Postives = 108/195 (55.38%), Query Frame = 0


Query: 1   MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLF-SIDLKAGYHQI 60
           ++LV KK    +R CVDY  LN  TI D   +  I+ L  ++  A +F ++DL +GYHQI
Sbjct: 662 VVLVPKK-DGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQI 721

Query: 61  RMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMNVLFRPHLRKFVLVFFNDIL- 120
            M   D  KT F T  G Y + VM FGL NAP+TF   M   FR    +FV V+ +DIL 
Sbjct: 722 PMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRD--LRFVNVYLDDILI 781

Query: 121 ---SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSI 180
              S EEH KHL+ +L  L+   L V KKKCKFA    E+L + I  Q++     K  +I
Sbjct: 782 FSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAI 841

Query: 181 AEWLSPINVREVHGF 191
            ++ +P  V++   F
Sbjct: 842 RDFPTPKTVKQAQRF 853

[Close]

BLAST of Cmc01g0020111 vs. ExPASy TrEMBL
Match: A0A5D3D9X2 (Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00270 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 5.4e-67
Identity = 136/195 (69.74%), Postives = 157/195 (80.51%), Query Frame = 0


Query: 1   MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQI 60
           +LLVKKK  S WRFCVDY A+NN T+PDK  I ++EELFD+LN ASLFS  DLK+GYHQI
Sbjct: 451 VLLVKKKDGS-WRFCVDYRAVNNATVPDKFPISVVEELFDELNGASLFSKNDLKSGYHQI 510

Query: 61  RMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMNVLFRPHLRKFVLVFFNDIL- 120
           RM E DI KT FRTHEGHY FLVM FGLTNAPATFQ+ MN +FRP+LRKFVLVFF+DIL 
Sbjct: 511 RMEEKDIPKTAFRTHEGHYKFLVMPFGLTNAPATFQALMNNVFRPYLRKFVLVFFDDILV 570

Query: 121 ---SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSI 180
              + EEH+ HL  +L+TLREH LY NKKKC FA+S++EYL HII G  VEVDPEKI+SI
Sbjct: 571 YSKNEEEHMNHLGKILSTLREHTLYANKKKCSFAQSKIEYLGHIISGGGVEVDPEKIRSI 630

Query: 181 AEWLSPINVREVHGF 191
           A+W  P NVRE+ GF
Sbjct: 631 ADWPIPTNVREIWGF 644

[Close]

BLAST of Cmc01g0020111 vs. ExPASy TrEMBL
Match: A0A5A7U8I6 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G00460 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 7.0e-67
Identity = 134/195 (68.72%), Postives = 156/195 (80.00%), Query Frame = 0


Query: 1   MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQI 60
           +LLVKKK  S WRFCVDY ALNNVT+PDK  I ++EELFD+L  ASLF+ IDLKAGYHQI
Sbjct: 25  VLLVKKKDGS-WRFCVDYRALNNVTVPDKFPIPVVEELFDELGGASLFTKIDLKAGYHQI 84

Query: 61  RMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMNVLFRPHLRKFVLVFFNDIL- 120
           RM + DIEKT FRTHEGHY FLVMSFGLTNAPATFQS MN +FRP+LRKFVLVFF+DIL 
Sbjct: 85  RMVDGDIEKTAFRTHEGHYEFLVMSFGLTNAPATFQSLMNSIFRPYLRKFVLVFFDDILI 144

Query: 121 ---SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSI 180
              + E+HLKH+EI+   LR+HEL+ N+KKC F  ++VEYL H+I  + VEVDPEKIK+I
Sbjct: 145 YSRNWEDHLKHMEIVFLVLRKHELFANRKKCSFGLAKVEYLGHLISNKGVEVDPEKIKAI 204

Query: 181 AEWLSPINVREVHGF 191
             W  P NVRE  GF
Sbjct: 205 TNWPKPTNVRETRGF 218

[Close]

BLAST of Cmc01g0020111 vs. ExPASy TrEMBL
Match: A0A5A7SMQ7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00120 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.7e-66
Identity = 133/195 (68.21%), Postives = 155/195 (79.49%), Query Frame = 0


Query: 1   MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQI 60
           +LLVKKK  S WRFCVDY ALNNVT+PDK  I ++EELFD+L  ASLF+ IDLKAGYHQI
Sbjct: 672 VLLVKKKDGS-WRFCVDYRALNNVTVPDKFPIPVVEELFDELGGASLFTKIDLKAGYHQI 731

Query: 61  RMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMNVLFRPHLRKFVLVFFNDIL- 120
           RM + DIEKT FRTHEGHY FLVM FGLTNAPATFQS MN +FRP+LRKFVLVFF+DIL 
Sbjct: 732 RMVDGDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRPYLRKFVLVFFDDILI 791

Query: 121 ---SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSI 180
              + E+HLKH+EI+   LR+HEL+ N+KKC F  ++VEYL H+I  + VEVDPEKIK+I
Sbjct: 792 YSRNWEDHLKHMEIVFLVLRKHELFANRKKCSFGLAKVEYLGHLISNKGVEVDPEKIKAI 851

Query: 181 AEWLSPINVREVHGF 191
             W  P NVRE  GF
Sbjct: 852 TNWPKPTNVRETRGF 865

[Close]

BLAST of Cmc01g0020111 vs. ExPASy TrEMBL
Match: A0A5D3DYS4 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold381G00230 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.7e-66
Identity = 133/195 (68.21%), Postives = 155/195 (79.49%), Query Frame = 0


Query: 1   MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQI 60
           +LLVKKK  S WRFCVDY ALNNVT+PDK  I ++EELFD+L  ASLF+ IDLKAGYHQI
Sbjct: 672 VLLVKKKDGS-WRFCVDYRALNNVTVPDKFPIPVVEELFDELGGASLFTKIDLKAGYHQI 731

Query: 61  RMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMNVLFRPHLRKFVLVFFNDIL- 120
           RM + DIEKT FRTHEGHY FLVM FGLTNAPATFQS MN +FRP+LRKFVLVFF+DIL 
Sbjct: 732 RMVDGDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRPYLRKFVLVFFDDILI 791

Query: 121 ---SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSI 180
              + E+HLKH+EI+   LR+HEL+ N+KKC F  ++VEYL H+I  + VEVDPEKIK+I
Sbjct: 792 YSRNWEDHLKHMEIVFLVLRKHELFANRKKCSFGLAKVEYLGHLISNKGVEVDPEKIKAI 851

Query: 181 AEWLSPINVREVHGF 191
             W  P NVRE  GF
Sbjct: 852 TNWPKPTNVRETRGF 865

[Close]

BLAST of Cmc01g0020111 vs. ExPASy TrEMBL
Match: A0A5D3B8Y6 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00260 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.7e-66
Identity = 133/195 (68.21%), Postives = 155/195 (79.49%), Query Frame = 0


Query: 1   MLLVKKKYRSWWRFCVDYIALNNVTIPDKISILLIEELFDKLNEASLFS-IDLKAGYHQI 60
           +LLVKKK  S WRFCVDY ALNNVT+PDK  I ++EELFD+L  ASLF+ IDLKAGYHQI
Sbjct: 663 VLLVKKKDGS-WRFCVDYRALNNVTVPDKFPIPVVEELFDELGGASLFTKIDLKAGYHQI 722

Query: 61  RMSENDIEKTTFRTHEGHYMFLVMSFGLTNAPATFQSSMNVLFRPHLRKFVLVFFNDIL- 120
           RM + DIEKT FRTHEGHY FLVM FGLTNAPATFQS MN +FRP+LRKFVLVFF+DIL 
Sbjct: 723 RMVDGDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRPYLRKFVLVFFDDILI 782

Query: 121 ---SLEEHLKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLWHIILGQRVEVDPEKIKSI 180
              + E+HLKH+EI+   LR+HEL+ N+KKC F  ++VEYL H+I  + VEVDPEKIK+I
Sbjct: 783 YSRNWEDHLKHMEIVFLVLRKHELFANRKKCSFGLAKVEYLGHLISNKGVEVDPEKIKAI 842

Query: 181 AEWLSPINVREVHGF 191
             W  P NVRE  GF
Sbjct: 843 TNWPKPTNVRETRGF 856

[Close]

BLAST of Cmc01g0020111 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 59.7 bits (143), Expect = 3.0e-09
Identity = 26/69 (37.68%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 124 LKHLEIMLTTLREHELYVNKKKCKFAKSRVEYLW--HIILGQRVEVDPEKIKSIAEWLSP 183
           + HL ++L    +H+ Y N+KKC F + ++ YL   HII G+ V  DP K++++  W  P
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 184 INVREVHGF 191
            N  E+ GF
Sbjct: 61  KNTTELRGF 69

The following BLAST results are available for this feature:

BLAST of Cmc01g0020111 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040958.1	1.1e-66	69.74	peroxidase 64 [Cucumis melo var. makuwa] >TYK20299.1 peroxidase 64 [Cucumis melo...	[more]
KAA0052233.1	1.5e-66	68.72	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0065392.1	5.5e-66	68.21	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048423.1	5.5e-66	68.21	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK30083.1	5.5e-66	68.21	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0020111 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	2.2e-33	40.76	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	7.8e-31	38.59	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	1.9e-29	39.13	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q99315	2.1e-28	40.51	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	2.1e-28	40.51	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc01g0020111 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D9X2	5.4e-67	69.74	Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00270 ...	[more]
A0A5A7U8I6	7.0e-67	68.72	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7SMQ7	2.7e-66	68.21	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DYS4	2.7e-66	68.21	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3B8Y6	2.7e-66	68.21	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc01g0020111 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	3.0e-09	37.68	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 30..160 e-value: 6.3E-54 score: 184.5
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..89 e-value: 6.3E-54 score: 184.5
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 3..190
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 3..190
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..160 e-value: 3.07213E-66 score: 198.974
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 36..156 e-value: 2.9E-17 score: 62.9
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0020111.1	Cmc01g0020111.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004601	peroxidase activity