Cmc01g0015461 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0015461
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	CACTA en-spm transposon protein
Location	CMiso1.1chr01: 13025604 .. 13026153 (-)
RNA-Seq Expression	Cmc01g0015461
Synteny	Cmc01g0015461

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATACTTTTATCCTTATTTGTCCTCTTTATTTACTAACTTAATTTCAAAATTTGTTGCAGAATCAAATGTTGGAACTCCAGTCCGGGCCTACCCTAGAGGTTCTTGGTCACTCTCTAGGGACAAGATATGTGAGACTGTGTTGGGTAGAAGACCGGGTTCCTCAAAAGGCCTTAATTGGGGACCTAAGCCCAAGTTCCGCAAGACGGCCAATGCTAGCAATGCCTCGACCTCGTGTTCGCAATCTACGACAGAGCTCCAATTACAAATCGAGCTTGATGAAGTTAAACGAGCGATTGAAGAAAAAAGAAAGACATCAAAGATGTTAGCTTCACAAGTGGAACAAATGCGAAAGCTCATAAAAGACATGAGTCGGGCACAACAAAGACCATCATAATCCCTAGCTTTGTGGTACGTATATATGTTTCCATTATTCTTAAGTTCTTGAAATTACATTATTTAGTGATGATAAGCATATGTACTAAACTTAGGCACTTTTGTATCATTGTAGGTCTTGCGGTGTAGAATGGCGCACAAGGCTCATTAGG

mRNA sequence

ATGCAATACTTTTATCCTTATTTGTCCTCTTTATTTACTAACTTAATTTCAAAATTTGTTGCAGAATCAAATGTTGGAACTCCAGTCCGGGCCTACCCTAGAGGTTCTTGGTCACTCTCTAGGGACAAGATATGTGAGACTGTGTTGGGTAGAAGACCGGGTTCCTCAAAAGGCCTTAATTGGGGACCTAAGCCCAAGTTCCGCAAGACGGCCAATGCTAGCAATGCCTCGACCTCGTGTTCGCAATCTACGACAGAGCTCCAATTACAAATCGAGCTTGATGAAGTTAAACGAGCGATTGAAGAAAAAAGAAAGACATCAAAGATGTTAGCTTCACAAGTGGAACAAATGCGAAAGCTCATAAAAGACATGAGTCGGGCACAACAAAGACCATCATAATCCCTAGCTTTGTGGTCTTGCGGTGTAGAATGGCGCACAAGGCTCATTAGG

Coding sequence (CDS)

ATGCAATACTTTTATCCTTATTTGTCCTCTTTATTTACTAACTTAATTTCAAAATTTGTTGCAGAATCAAATGTTGGAACTCCAGTCCGGGCCTACCCTAGAGGTTCTTGGTCACTCTCTAGGGACAAGATATGTGAGACTGTGTTGGGTAGAAGACCGGGTTCCTCAAAAGGCCTTAATTGGGGACCTAAGCCCAAGTTCCGCAAGACGGCCAATGCTAGCAATGCCTCGACCTCGTGTTCGCAATCTACGACAGAGCTCCAATTACAAATCGAGCTTGATGAAGTTAAACGAGCGATTGAAGAAAAAAGAAAGACATCAAAGATGTTAGCTTCACAAGTGGAACAAATGCGAAAGCTCATAAAAGACATGAGTCGGGCACAACAAAGACCATCATAA

Protein sequence

MQYFYPYLSSLFTNLISKFVAESNVGTPVRAYPRGSWSLSRDKICETVLGRRPGSSKGLNWGPKPKFRKTANASNASTSCSQSTTELQLQIELDEVKRAIEEKRKTSKMLASQVEQMRKLIKDMSRAQQRPS

Homology

[Close]

BLAST of Cmc01g0015461 vs. NCBI nr
Match: KAA0043385.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.0 bits (310), Expect = 9.5e-25
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 0


Query: 22  ESNVGTPVRAYPRGSWSLSRDKICETVLGRRPGSSKGLNWGPKPKFRKTANASNASTSCS 81
           +SN GTP+ AYP GS  LS D+IC+ V GRRPG SKGL WGPKPK R+TA+AS++STSCS
Sbjct: 217 KSNAGTPIPAYPIGSQPLSEDEICDQVFGRRPGYSKGLGWGPKPKARRTASASSSSTSCS 276

Query: 82  QST-TELQLQIELDEVKRAIEEKRKTSKMLASQVEQMRKLIKDMSRAQQRP 132
           QST  E++LQ +L E    IE + +  + LASQVE M+K+I+D++RAQQ P
Sbjct: 277 QSTQKEIELQAKLHEALERIEVQDRNHQALASQVEAMKKMIEDLTRAQQGP 327

[Close]

BLAST of Cmc01g0015461 vs. NCBI nr
Match: KAA0066457.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.9 bits (307), Expect = 2.1e-24
Identity = 66/111 (59.46%), Postives = 84/111 (75.68%), Query Frame = 0


Query: 22  ESNVGTPVRAYPRGSWSLSRDKICETVLGRRPGSSKGLNWGPKPKFRKTANASNASTSCS 81
           +SN GTP+ AYP GS  LS D+IC+ VLGRRPG SKGL WGPKPK  +TA+AS++STSCS
Sbjct: 96  KSNAGTPIPAYPEGSQPLSEDEICDQVLGRRPGYSKGLGWGPKPKACRTASASSSSTSCS 155

Query: 82  QST-TELQLQIELDEVKRAIEEKRKTSKMLASQVEQMRKLIKDMSRAQQRP 132
           QST  E +LQ +L E    IE + +  + LASQVE M+K+I+D++RAQQ P
Sbjct: 156 QSTQKEFELQAKLHEALERIEVQDRNHQALASQVEAMKKMIEDLTRAQQGP 206

[Close]

BLAST of Cmc01g0015461 vs. NCBI nr
Match: KAA0038852.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK09429.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 2.3e-23
Identity = 62/109 (56.88%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 22  ESNVGTPVRAYPRGSWSLSRDKICETVLGRRPGSSKGLNWGPKPKFRKTANASNASTSCS 81
           +SN GTP+ AYP+GS  LS D+IC+ VLGRRP  SKGL WGPKPK R+TA+AS++STSCS
Sbjct: 102 KSNAGTPIPAYPKGSQPLSEDEICDQVLGRRPSYSKGLGWGPKPKARRTASASSSSTSCS 161

Query: 82  QST-TELQLQIELDEVKRAIEEKRKTSKMLASQVEQMRKLIKDMSRAQQ 130
           QST  E++LQ +L E    IE + +  + L S+VE M+K+I++++RAQQ
Sbjct: 162 QSTQKEIELQAKLHEALERIEVQDRNHQALVSKVESMKKMIEELTRAQQ 210

[Close]

BLAST of Cmc01g0015461 vs. NCBI nr
Match: KAA0032555.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 5.2e-23
Identity = 66/97 (68.04%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 35  GSWSLSRDKICETVLGRRPGSSKGLNWGPKPKFRKTANASNASTSCSQSTTELQLQIELD 94
           GS  LSRDKICE VLGRRPG SKGL WG K K  KT +AS+A+TSC QST ELQL +EL+
Sbjct: 199 GSQPLSRDKICEIVLGRRPGYSKGLGWGLKSKAYKTTSASSATTSCLQSTVELQLPVELN 258

Query: 95  EVKRAIEEKRKTSKMLASQVEQMRKLIKDMSRAQQRP 132
           E KR IEE+ K   MLA +VE+MRKLI++MSRAQQ P
Sbjct: 259 EAKRVIEEQTKIQDMLALKVERMRKLIENMSRAQQGP 295

[Close]

BLAST of Cmc01g0015461 vs. NCBI nr
Match: TYK20926.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 5.2e-23
Identity = 66/97 (68.04%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 35  GSWSLSRDKICETVLGRRPGSSKGLNWGPKPKFRKTANASNASTSCSQSTTELQLQIELD 94
           GS  LSRDKICE VLGRRPG SKGL WG K K  KT +AS+A+TSC QST ELQL +EL+
Sbjct: 185 GSQPLSRDKICEIVLGRRPGYSKGLGWGLKSKAYKTTSASSATTSCLQSTVELQLPVELN 244

Query: 95  EVKRAIEEKRKTSKMLASQVEQMRKLIKDMSRAQQRP 132
           E KR IEE+ K   MLA +VE+MRKLI++MSRAQQ P
Sbjct: 245 EAKRVIEEQTKIQDMLALKVERMRKLIENMSRAQQGP 281

[Close]

BLAST of Cmc01g0015461 vs. ExPASy TrEMBL
Match: A0A5A7TPP3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold588G00560 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.6e-25
Identity = 66/111 (59.46%), Postives = 85/111 (76.58%), Query Frame = 0


Query: 22  ESNVGTPVRAYPRGSWSLSRDKICETVLGRRPGSSKGLNWGPKPKFRKTANASNASTSCS 81
           +SN GTP+ AYP GS  LS D+IC+ V GRRPG SKGL WGPKPK R+TA+AS++STSCS
Sbjct: 217 KSNAGTPIPAYPIGSQPLSEDEICDQVFGRRPGYSKGLGWGPKPKARRTASASSSSTSCS 276

Query: 82  QST-TELQLQIELDEVKRAIEEKRKTSKMLASQVEQMRKLIKDMSRAQQRP 132
           QST  E++LQ +L E    IE + +  + LASQVE M+K+I+D++RAQQ P
Sbjct: 277 QSTQKEIELQAKLHEALERIEVQDRNHQALASQVEAMKKMIEDLTRAQQGP 327

[Close]

BLAST of Cmc01g0015461 vs. ExPASy TrEMBL
Match: A0A5A7VH93 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G005580 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.0e-24
Identity = 66/111 (59.46%), Postives = 84/111 (75.68%), Query Frame = 0


Query: 22  ESNVGTPVRAYPRGSWSLSRDKICETVLGRRPGSSKGLNWGPKPKFRKTANASNASTSCS 81
           +SN GTP+ AYP GS  LS D+IC+ VLGRRPG SKGL WGPKPK  +TA+AS++STSCS
Sbjct: 96  KSNAGTPIPAYPEGSQPLSEDEICDQVLGRRPGYSKGLGWGPKPKACRTASASSSSTSCS 155

Query: 82  QST-TELQLQIELDEVKRAIEEKRKTSKMLASQVEQMRKLIKDMSRAQQRP 132
           QST  E +LQ +L E    IE + +  + LASQVE M+K+I+D++RAQQ P
Sbjct: 156 QSTQKEFELQAKLHEALERIEVQDRNHQALASQVEAMKKMIEDLTRAQQGP 206

[Close]

BLAST of Cmc01g0015461 vs. ExPASy TrEMBL
Match: A0A5D3CGK4 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold404G00040 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 62/109 (56.88%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 22  ESNVGTPVRAYPRGSWSLSRDKICETVLGRRPGSSKGLNWGPKPKFRKTANASNASTSCS 81
           +SN GTP+ AYP+GS  LS D+IC+ VLGRRP  SKGL WGPKPK R+TA+AS++STSCS
Sbjct: 102 KSNAGTPIPAYPKGSQPLSEDEICDQVLGRRPSYSKGLGWGPKPKARRTASASSSSTSCS 161

Query: 82  QST-TELQLQIELDEVKRAIEEKRKTSKMLASQVEQMRKLIKDMSRAQQ 130
           QST  E++LQ +L E    IE + +  + L S+VE M+K+I++++RAQQ
Sbjct: 162 QSTQKEIELQAKLHEALERIEVQDRNHQALVSKVESMKKMIEELTRAQQ 210

[Close]

BLAST of Cmc01g0015461 vs. ExPASy TrEMBL
Match: A0A5D3DBI6 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00700 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.5e-23
Identity = 66/97 (68.04%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 35  GSWSLSRDKICETVLGRRPGSSKGLNWGPKPKFRKTANASNASTSCSQSTTELQLQIELD 94
           GS  LSRDKICE VLGRRPG SKGL WG K K  KT +AS+A+TSC QST ELQL +EL+
Sbjct: 185 GSQPLSRDKICEIVLGRRPGYSKGLGWGLKSKAYKTTSASSATTSCLQSTVELQLPVELN 244

Query: 95  EVKRAIEEKRKTSKMLASQVEQMRKLIKDMSRAQQRP 132
           E KR IEE+ K   MLA +VE+MRKLI++MSRAQQ P
Sbjct: 245 EAKRVIEEQTKIQDMLALKVERMRKLIENMSRAQQGP 281

[Close]

BLAST of Cmc01g0015461 vs. ExPASy TrEMBL
Match: A0A5A7STK6 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43053G00120 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.5e-23
Identity = 66/97 (68.04%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 35  GSWSLSRDKICETVLGRRPGSSKGLNWGPKPKFRKTANASNASTSCSQSTTELQLQIELD 94
           GS  LSRDKICE VLGRRPG SKGL WG K K  KT +AS+A+TSC QST ELQL +EL+
Sbjct: 199 GSQPLSRDKICEIVLGRRPGYSKGLGWGLKSKAYKTTSASSATTSCLQSTVELQLPVELN 258

Query: 95  EVKRAIEEKRKTSKMLASQVEQMRKLIKDMSRAQQRP 132
           E KR IEE+ K   MLA +VE+MRKLI++MSRAQQ P
Sbjct: 259 EAKRVIEEQTKIQDMLALKVERMRKLIENMSRAQQGP 295

The following BLAST results are available for this feature:

BLAST of Cmc01g0015461 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043385.1	9.5e-25	59.46	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0066457.1	2.1e-24	59.46	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0038852.1	2.3e-23	56.88	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK09429.1 CACTA en-...	[more]
KAA0032555.1	5.2e-23	68.04	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYK20926.1	5.2e-23	68.04	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0015461 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc01g0015461 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TPP3	4.6e-25	59.46	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7VH93	1.0e-24	59.46	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3CGK4	1.1e-23	56.88	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3DBI6	2.5e-23	68.04	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7STK6	2.5e-23	68.04	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of Cmc01g0015461 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 110..130
None	No IPR available	COILS	Coil	Coil	coord: 86..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0015461.1	Cmc01g0015461.1	mRNA