Cmc01g0015411 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0015411
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic-like
Location	CMiso1.1chr01: 12982436 .. 12982690 (+)
RNA-Seq Expression	Cmc01g0015411
Synteny	Cmc01g0015411

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAATGGATGCTCTGGAAAGATGGGACAGGCTGTTATCAAAGCTGCTGACTCTGCTGGCGTCAATGTTGTGCCAGTGTCATTTGGTTCCTTGGAGGAATCTGGACAAACTATACAAGCATCTGGAAAGGATATTTTGGTTCATGGCCCTTTAGACAGGGAAAATGTACTTGCATCAGTTTTTGATGAATATCCAAATTTGATCGTGGTGGACTATACTGTGCCTTCTGCTGTGAATGGTAATGACAATGCTTGA

mRNA sequence

GTAAATGGATGCTCTGGAAAGATGGGACAGGCTGTTATCAAAGCTGCTGACTCTGCTGGCGTCAATGTTGTGCCAGTGTCATTTGGTTCCTTGGAGGAATCTGGACAAACTATACAAGCATCTGGAAAGGATATTTTGGTTCATGGCCCTTTAGACAGGGAAAATGTACTTGCATCAGTTTTTGATGAATATCCAAATTTGATCGTGGTGGACTATACTGTGCCTTCTGCTGTGAATGGTAATGACAATGCTTGA

Coding sequence (CDS)

ATGGGACAGGCTGTTATCAAAGCTGCTGACTCTGCTGGCGTCAATGTTGTGCCAGTGTCATTTGGTTCCTTGGAGGAATCTGGACAAACTATACAAGCATCTGGAAAGGATATTTTGGTTCATGGCCCTTTAGACAGGGAAAATGTACTTGCATCAGTTTTTGATGAATATCCAAATTTGATCGTGGTGGACTATACTGTGCCTTCTGCTGTGAATGGTAATGACAATGCTTGA

Protein sequence

MGQAVIKAADSAGVNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNLIVVDYTVPSAVNGNDNA

Homology

[Close]

BLAST of Cmc01g0015411 vs. NCBI nr
Match: XP_008447745.1 (PREDICTED: 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic-like [Cucumis melo] >XP_008447746.1 PREDICTED: 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic-like [Cucumis melo])

HSP 1 Score: 143.7 bits (361), Expect = 6.8e-31
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1   MGQAVIKAADSAGVNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL 60
           MGQAVIKAADSAGVNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL
Sbjct: 70  MGQAVIKAADSAGVNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL 129

Query: 61  IVVDYTVPSAVNGN 75
           IVVDYTVPSAVN N
Sbjct: 130 IVVDYTVPSAVNDN 143

[Close]

BLAST of Cmc01g0015411 vs. NCBI nr
Match: TYK23125.1 (4-hydroxy-tetrahydrodipicolinate reductase 2 [Cucumis melo var. makuwa])

HSP 1 Score: 143.7 bits (361), Expect = 6.8e-31
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1   MGQAVIKAADSAGVNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL 60
           MGQAVIKAADSAGVNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL
Sbjct: 70  MGQAVIKAADSAGVNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL 129

Query: 61  IVVDYTVPSAVNGN 75
           IVVDYTVPSAVN N
Sbjct: 130 IVVDYTVPSAVNDN 143

[Close]

BLAST of Cmc01g0015411 vs. NCBI nr
Match: XP_011658970.1 (4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic [Cucumis sativus] >KAE8646049.1 hypothetical protein Csa_015651 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 1.5e-30
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1   MGQAVIKAADSAGVNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL 60
           MGQAVIKAADSAG+NVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL
Sbjct: 69  MGQAVIKAADSAGLNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL 128

Query: 61  IVVDYTVPSAVNGN 75
           IVVDYTVPSAVN N
Sbjct: 129 IVVDYTVPSAVNDN 142

[Close]

BLAST of Cmc01g0015411 vs. NCBI nr
Match: XP_038897258.1 (4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 136.0 bits (341), Expect = 1.4e-28
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1   MGQAVIKAADSAGVNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL 60
           MG+AVIKAADSAG+NVVPVSFGSLEESG TIQASGKDILVHGP DRENVLASVFDEYPNL
Sbjct: 69  MGKAVIKAADSAGLNVVPVSFGSLEESGLTIQASGKDILVHGPSDRENVLASVFDEYPNL 128

Query: 61  IVVDYTVPSAVNGN 75
           IVVDYTVPSAVN N
Sbjct: 129 IVVDYTVPSAVNDN 142

[Close]

BLAST of Cmc01g0015411 vs. NCBI nr
Match: XP_038897260.1 (4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 136.0 bits (341), Expect = 1.4e-28
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  MGQAVIKAADSAGVNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL 60
          MG+AVIKAADSAG+NVVPVSFGSLEESG TIQASGKDILVHGP DRENVLASVFDEYPNL
Sbjct: 9  MGKAVIKAADSAGLNVVPVSFGSLEESGLTIQASGKDILVHGPSDRENVLASVFDEYPNL 68

Query: 61 IVVDYTVPSAVNGN 75
          IVVDYTVPSAVN N
Sbjct: 69 IVVDYTVPSAVNDN 82

[Close]

BLAST of Cmc01g0015411 vs. ExPASy Swiss-Prot
Match: Q8LB01 (4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DAPB2 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.1e-26
Identity = 55/74 (74.32%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1   MGQAVIKAADSAGVNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL 60
           MG+AVIKAADSAGVN+VP SFGS+EE+GQT++  GK+ILVHGP +RE VL+SVF++YP L
Sbjct: 86  MGKAVIKAADSAGVNIVPTSFGSVEEAGQTVEVCGKEILVHGPTEREKVLSSVFEKYPEL 145

Query: 61  IVVDYTVPSAVNGN 75
           IVVDYT+PSAVN N
Sbjct: 146 IVVDYTIPSAVNDN 159

[Close]

BLAST of Cmc01g0015411 vs. ExPASy Swiss-Prot
Match: O80574 (4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DAPB1 PE=1 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-23
Identity = 51/74 (68.92%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1   MGQAVIKAADSAGVNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL 60
           MG+AVIKAADSAGVN+VP+SFGS  E GQ ++  GK+I VHGP +RE VL+SVF+++P L
Sbjct: 84  MGKAVIKAADSAGVNIVPISFGSAGEDGQRVEVCGKEITVHGPTEREKVLSSVFEKHPEL 143

Query: 61  IVVDYTVPSAVNGN 75
           IVVDYT+PSAVN N
Sbjct: 144 IVVDYTIPSAVNDN 157

[Close]

BLAST of Cmc01g0015411 vs. ExPASy Swiss-Prot
Match: Q10P67 (Probable 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=DAPB2 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-13
Identity = 33/74 (44.59%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 1   MGQAVIKAADSAGVNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL 60
           MG +V +A  S+G+++VP+SF S +   +T++    D+ ++GP  RE+VL+SV DE+P++
Sbjct: 62  MGLSVAEAVTSSGLHLVPISFSSRDTLDRTVRVGHTDVRIYGPSAREDVLSSVIDEFPDV 121

Query: 61  IVVDYTVPSAVNGN 75
           +VVDYT P +VN N
Sbjct: 122 VVVDYTAPDSVNAN 135

[Close]

BLAST of Cmc01g0015411 vs. ExPASy Swiss-Prot
Match: Q67W29 (Probable 4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=DAPB1 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-12
Identity = 34/74 (45.95%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 1   MGQAVIKAADSAGVNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL 60
           MG+AV +AA SAG+ +VPVSF ++E     ++   ++I +  P + E++L S+  +YP++
Sbjct: 80  MGKAVAEAAVSAGLQLVPVSFSAIEVPDGKVEICDREIYIRDPSEGESILPSIAKDYPDM 139

Query: 61  IVVDYTVPSAVNGN 75
           IVVDYTVP AVN N
Sbjct: 140 IVVDYTVPDAVNAN 153

[Close]

BLAST of Cmc01g0015411 vs. ExPASy TrEMBL
Match: A0A1S3BI41 (4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103490146 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.3e-31
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1   MGQAVIKAADSAGVNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL 60
           MGQAVIKAADSAGVNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL
Sbjct: 70  MGQAVIKAADSAGVNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL 129

Query: 61  IVVDYTVPSAVNGN 75
           IVVDYTVPSAVN N
Sbjct: 130 IVVDYTVPSAVNDN 143

[Close]

BLAST of Cmc01g0015411 vs. ExPASy TrEMBL
Match: A0A5D3DHR7 (4-hydroxy-tetrahydrodipicolinate reductase 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001210 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.3e-31
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1   MGQAVIKAADSAGVNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL 60
           MGQAVIKAADSAGVNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL
Sbjct: 70  MGQAVIKAADSAGVNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL 129

Query: 61  IVVDYTVPSAVNGN 75
           IVVDYTVPSAVN N
Sbjct: 130 IVVDYTVPSAVNDN 143

[Close]

BLAST of Cmc01g0015411 vs. ExPASy TrEMBL
Match: A0A0A0K8P0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G209030 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.3e-31
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1   MGQAVIKAADSAGVNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL 60
           MGQAVIKAADSAG+NVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL
Sbjct: 69  MGQAVIKAADSAGLNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL 128

Query: 61  IVVDYTVPSAVNGN 75
           IVVDYTVPSAVN N
Sbjct: 129 IVVDYTVPSAVNDN 142

[Close]

BLAST of Cmc01g0015411 vs. ExPASy TrEMBL
Match: A0A6J1I660 (4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111471441 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.9e-27
Identity = 66/74 (89.19%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1   MGQAVIKAADSAGVNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL 60
           MG+AVIKAADSAG+NVVPVSFGSLEESG TIQASGKDILVHGP +R +VLASVFDEYPNL
Sbjct: 69  MGKAVIKAADSAGLNVVPVSFGSLEESGLTIQASGKDILVHGPSNRADVLASVFDEYPNL 128

Query: 61  IVVDYTVPSAVNGN 75
           IVVDYTVPSAVN N
Sbjct: 129 IVVDYTVPSAVNDN 142

[Close]

BLAST of Cmc01g0015411 vs. ExPASy TrEMBL
Match: A0A6J1EVG5 (4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111438428 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.9e-27
Identity = 66/74 (89.19%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1   MGQAVIKAADSAGVNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL 60
           MG+AVIKAADSAG+NVVPVSFGSLEESG TIQASGKDILVHGP +R +VLASVFDEYPNL
Sbjct: 69  MGKAVIKAADSAGLNVVPVSFGSLEESGLTIQASGKDILVHGPSNRADVLASVFDEYPNL 128

Query: 61  IVVDYTVPSAVNGN 75
           IVVDYTVPSAVN N
Sbjct: 129 IVVDYTVPSAVNDN 142

[Close]

BLAST of Cmc01g0015411 vs. TAIR 10
Match: AT3G59890.2 (Dihydrodipicolinate reductase, bacterial/plant )

HSP 1 Score: 118.6 bits (296), Expect = 2.2e-27
Identity = 55/74 (74.32%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1   MGQAVIKAADSAGVNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL 60
           MG+AVIKAADSAGVN+VP SFGS+EE+GQT++  GK+ILVHGP +RE VL+SVF++YP L
Sbjct: 80  MGKAVIKAADSAGVNIVPTSFGSVEEAGQTVEVCGKEILVHGPTEREKVLSSVFEKYPEL 139

Query: 61  IVVDYTVPSAVNGN 75
           IVVDYT+PSAVN N
Sbjct: 140 IVVDYTIPSAVNDN 153

[Close]

BLAST of Cmc01g0015411 vs. TAIR 10
Match: AT3G59890.1 (Dihydrodipicolinate reductase, bacterial/plant )

HSP 1 Score: 118.6 bits (296), Expect = 2.2e-27
Identity = 55/74 (74.32%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1   MGQAVIKAADSAGVNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL 60
           MG+AVIKAADSAGVN+VP SFGS+EE+GQT++  GK+ILVHGP +RE VL+SVF++YP L
Sbjct: 86  MGKAVIKAADSAGVNIVPTSFGSVEEAGQTVEVCGKEILVHGPTEREKVLSSVFEKYPEL 145

Query: 61  IVVDYTVPSAVNGN 75
           IVVDYT+PSAVN N
Sbjct: 146 IVVDYTIPSAVNDN 159

[Close]

BLAST of Cmc01g0015411 vs. TAIR 10
Match: AT2G44040.1 (Dihydrodipicolinate reductase, bacterial/plant )

HSP 1 Score: 109.8 bits (273), Expect = 1.0e-24
Identity = 51/74 (68.92%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1   MGQAVIKAADSAGVNVVPVSFGSLEESGQTIQASGKDILVHGPLDRENVLASVFDEYPNL 60
           MG+AVIKAADSAGVN+VP+SFGS  E GQ ++  GK+I VHGP +RE VL+SVF+++P L
Sbjct: 84  MGKAVIKAADSAGVNIVPISFGSAGEDGQRVEVCGKEITVHGPTEREKVLSSVFEKHPEL 143

Query: 61  IVVDYTVPSAVNGN 75
           IVVDYT+PSAVN N
Sbjct: 144 IVVDYTIPSAVNDN 157

The following BLAST results are available for this feature:

BLAST of Cmc01g0015411 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447745.1	6.8e-31	98.65	PREDICTED: 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic-like [Cuc...	[more]
TYK23125.1	6.8e-31	98.65	4-hydroxy-tetrahydrodipicolinate reductase 2 [Cucumis melo var. makuwa]	[more]
XP_011658970.1	1.5e-30	97.30	4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic [Cucumis sativus] >K...	[more]
XP_038897258.1	1.4e-28	93.24	4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic isoform X1 [Benincas...	[more]
XP_038897260.1	1.4e-28	93.24	4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic isoform X2 [Benincas...	[more]

BLAST of Cmc01g0015411 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LB01	3.1e-26	74.32	4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic OS=Arabidopsis thali...	[more]
O80574	1.4e-23	68.92	4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic OS=Arabidopsis thali...	[more]
Q10P67	1.7e-13	44.59	Probable 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic OS=Oryza sa...	[more]
Q67W29	1.5e-12	45.95	Probable 4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic OS=Oryza sa...	[more]

BLAST of Cmc01g0015411 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BI41	3.3e-31	98.65	4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic-like OS=Cucumis melo...	[more]
A0A5D3DHR7	3.3e-31	98.65	4-hydroxy-tetrahydrodipicolinate reductase 2 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A0A0K8P0	7.3e-31	97.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G209030 PE=3 SV=1	[more]
A0A6J1I660	4.9e-27	89.19	4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic-like OS=Cucurbita ma...	[more]
A0A6J1EVG5	4.9e-27	89.19	4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic-like OS=Cucurbita mo...	[more]

BLAST of Cmc01g0015411 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G59890.2	2.2e-27	74.32	Dihydrodipicolinate reductase, bacterial/plant	[more]
AT3G59890.1	2.2e-27	74.32	Dihydrodipicolinate reductase, bacterial/plant	[more]
AT2G44040.1	1.0e-24	68.92	Dihydrodipicolinate reductase, bacterial/plant	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023940	Dihydrodipicolinate reductase	PANTHER	PTHR20836	DIHYDRODIPICOLINATE REDUCTASE	coord: 1..74
None	No IPR available	PANTHER	PTHR20836:SF0	4-HYDROXY-TETRAHYDRODIPICOLINATE REDUCTASE 1, CHLOROPLASTIC-RELATED	coord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0015411.1	Cmc01g0015411.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019877	diaminopimelate biosynthetic process
biological_process	GO:0009089	lysine biosynthetic process via diaminopimelate
biological_process	GO:0006431	methionyl-tRNA aminoacylation
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0048608	reproductive structure development
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0008839	4-hydroxy-tetrahydrodipicolinate reductase
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004825	methionine-tRNA ligase activity
molecular_function	GO:0070402	NADPH binding
molecular_function	GO:0000049	tRNA binding