Cmc01g0013351 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0013351
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr01: 9876400 .. 9876951 (-)
RNA-Seq Expression	Cmc01g0013351
Synteny	Cmc01g0013351

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGATGAGAAAGATGAGACTCCAAACATGTCTGAAGTTAGAACTACGAGTACTGTGGAAGAGTCTAAAGCTGATAATTCATCTGACGGTCCAGGTAAAAGTTTGAAAAAATCATCAGAAGAAATTGTCAATAAAAAATCTGAACTAATTCCGTCAGCTCATGTAAAGAAAAATCATCCAGCAAGCTCTATCATAAGTGATCCATCAGTTGGGATGCAGACTAGAAGGAAAGATAAGATTGACTATTTGAAGATGGTTGCTAACTTGTGCTATATTTCCACCATTGAATCTTTGACTGTTGACTCTGCTCTCAAGGATGAGTATTGGTTAAATGCTATGCAAGAGGAGCTATTGCAATATAGACAAAACAATGTCTGGACGTTAGTCTCAAAGCCAGAAGGTGTAAACGTTATTGGCACCAAATACATATTTAAAAATAAGAGTGATGAAACTGGATGTGTGACGAAAAATAAAGCCAGATTAGTAGCTCAAGGGTATACTCAAGTTGAAGGTGTTGACTTTGATGAAACGTTTTCTCCTGTTGCTTGA

mRNA sequence

ATGAATGATGAGAAAGATGAGACTCCAAACATGTCTGAAGTTAGAACTACGAGTACTGTGGAAGAGTCTAAAGCTGATAATTCATCTGACGGTCCAGGTAAAAGTTTGAAAAAATCATCAGAAGAAATTGTCAATAAAAAATCTGAACTAATTCCGTCAGCTCATGTAAAGAAAAATCATCCAGCAAGCTCTATCATAAGTGATCCATCAGTTGGGATGCAGACTAGAAGGAAAGATAAGATTGACTATTTGAAGATGGTTGCTAACTTGTGCTATATTTCCACCATTGAATCTTTGACTGTTGACTCTGCTCTCAAGGATGAGTATTGGTTAAATGCTATGCAAGAGGAGCTATTGCAATATAGACAAAACAATGTCTGGACGTTAGTCTCAAAGCCAGAAGGTGTAAACGTTATTGGCACCAAATACATATTTAAAAATAAGAGTGATGAAACTGGATGTGTGACGAAAAATAAAGCCAGATTAGTAGCTCAAGGGTATACTCAAGTTGAAGGTGTTGACTTTGATGAAACGTTTTCTCCTGTTGCTTGA

Coding sequence (CDS)

ATGAATGATGAGAAAGATGAGACTCCAAACATGTCTGAAGTTAGAACTACGAGTACTGTGGAAGAGTCTAAAGCTGATAATTCATCTGACGGTCCAGGTAAAAGTTTGAAAAAATCATCAGAAGAAATTGTCAATAAAAAATCTGAACTAATTCCGTCAGCTCATGTAAAGAAAAATCATCCAGCAAGCTCTATCATAAGTGATCCATCAGTTGGGATGCAGACTAGAAGGAAAGATAAGATTGACTATTTGAAGATGGTTGCTAACTTGTGCTATATTTCCACCATTGAATCTTTGACTGTTGACTCTGCTCTCAAGGATGAGTATTGGTTAAATGCTATGCAAGAGGAGCTATTGCAATATAGACAAAACAATGTCTGGACGTTAGTCTCAAAGCCAGAAGGTGTAAACGTTATTGGCACCAAATACATATTTAAAAATAAGAGTGATGAAACTGGATGTGTGACGAAAAATAAAGCCAGATTAGTAGCTCAAGGGTATACTCAAGTTGAAGGTGTTGACTTTGATGAAACGTTTTCTCCTGTTGCTTGA

Protein sequence

MNDEKDETPNMSEVRTTSTVEESKADNSSDGPGKSLKKSSEEIVNKKSELIPSAHVKKNHPASSIISDPSVGMQTRRKDKIDYLKMVANLCYISTIESLTVDSALKDEYWLNAMQEELLQYRQNNVWTLVSKPEGVNVIGTKYIFKNKSDETGCVTKNKARLVAQGYTQVEGVDFDETFSPVA

Homology

[Close]

BLAST of Cmc01g0013351 vs. NCBI nr
Match: KAA0048227.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 352.1 bits (902), Expect = 3.0e-93
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MNDEKDETPNMSEVRTTSTVEESKADNSSDGPGKSLKKSSEEIVNKKSELIPSAHVKKNH 60
           MNDEKDETPNMSEVRTTSTVEESKADNSSDGPGKSLKKSSEEIVNKKSELIPSAHVKKNH
Sbjct: 1   MNDEKDETPNMSEVRTTSTVEESKADNSSDGPGKSLKKSSEEIVNKKSELIPSAHVKKNH 60

Query: 61  PASSIISDPSVGMQTRRKDKIDYLKMVANLCYISTIESLTVDSALKDEYWLNAMQEELLQ 120
           PASSIISDPSVGMQTRRKDKIDYLKMVANLCYISTIESLTVDSALKDEYWLNAMQEELLQ
Sbjct: 61  PASSIISDPSVGMQTRRKDKIDYLKMVANLCYISTIESLTVDSALKDEYWLNAMQEELLQ 120

Query: 121 YRQNNVWTLVSKPEGVNVIGTKYIFKNKSDETGCVTKNKARLVAQGYTQVEGVDFDETFS 180
           YRQNNVWTLVSKPEGVNVIGTKYIFKNKSDETGCVTKNKARLVAQGYTQVEGVDFDETFS
Sbjct: 121 YRQNNVWTLVSKPEGVNVIGTKYIFKNKSDETGCVTKNKARLVAQGYTQVEGVDFDETFS 180

Query: 181 PVA 184
            VA
Sbjct: 181 HVA 183

[Close]

BLAST of Cmc01g0013351 vs. NCBI nr
Match: TYK08028.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 349.7 bits (896), Expect = 1.5e-92
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MNDEKDETPNMSEVRTTSTVEESKADNSSDGPGKSLKKSSEEIVNKKSELIPSAHVKKNH 60
           MNDEKDETPNMSEVRTTSTVEESKADNSSDGPGKSLKKSSEEIVNKKSELIPSAHVKKNH
Sbjct: 1   MNDEKDETPNMSEVRTTSTVEESKADNSSDGPGKSLKKSSEEIVNKKSELIPSAHVKKNH 60

Query: 61  PASSIISDPSVGMQTRRKDKIDYLKMVANLCYISTIESLTVDSALKDEYWLNAMQEELLQ 120
           PASSIISDPSVGMQTRRKDKIDYLKMVANLCYISTIESLTVDSALKDEYWLNAMQEELLQ
Sbjct: 61  PASSIISDPSVGMQTRRKDKIDYLKMVANLCYISTIESLTVDSALKDEYWLNAMQEELLQ 120

Query: 121 YRQNNVWTLVSKPEGVNVIGTKYIFKNKSDETGCVTKNKARLVAQGYTQVEGVDFDETFS 180
           YRQNNVWTLVSKPEGVNVIGTKYIFKNKSDETGCVTKNKARLVAQGYTQVEGVDFDETFS
Sbjct: 121 YRQNNVWTLVSKPEGVNVIGTKYIFKNKSDETGCVTKNKARLVAQGYTQVEGVDFDETFS 180

[Close]

BLAST of Cmc01g0013351 vs. NCBI nr
Match: KAA0035157.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 312.8 bits (800), Expect = 2.0e-81
Identity = 163/184 (88.59%), Postives = 172/184 (93.48%), Query Frame = 0


Query: 1   MNDEKDETPNMSEVRTTSTVEESKADNSSDGPGKSLKKSSEEIVNKKSELIPSAHVKKNH 60
           MNDE+DETPNMSEVRTTSTVEESKADNSSD  GKSLKKS EEI+NKKS+LIPSAHVKKNH
Sbjct: 503 MNDEEDETPNMSEVRTTSTVEESKADNSSDSLGKSLKKSLEEIINKKSKLIPSAHVKKNH 562

Query: 61  PASSIISDPSVGMQTRRKDKIDYLKMVANLCYISTIESLTVD-SALKDEYWLNAMQEELL 120
           PASSII DPS GMQTRRKDKIDYLKMVA+LCYISTIE  TVD SALKDEYWLNAMQEELL
Sbjct: 563 PASSIIGDPSAGMQTRRKDKIDYLKMVADLCYISTIEHSTVDHSALKDEYWLNAMQEELL 622

Query: 121 QYRQNNVWTLVSKPEGVNVIGTKYIFKNKSDETGCVTKNKARLVAQGYTQVEGVDFDETF 180
           Q+R+NNVW LV KP GVNVIGTK+IFKNK+DE GCVTKNKARLVAQGYTQVEGVDFDETF
Sbjct: 623 QFRRNNVWMLVLKPVGVNVIGTKWIFKNKTDEIGCVTKNKARLVAQGYTQVEGVDFDETF 682

Query: 181 SPVA 184
           +PVA
Sbjct: 683 APVA 686

[Close]

BLAST of Cmc01g0013351 vs. NCBI nr
Match: TYK13607.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 309.3 bits (791), Expect = 2.2e-80
Identity = 156/183 (85.25%), Postives = 168/183 (91.80%), Query Frame = 0


Query: 1   MNDEKDETPNMSEVRTTSTVEESKADNSSDGPGKSLKKSSEEIVNKKSELIPSAHVKKNH 60
           MND++DETPNMSE RTTSTVE SKADN SD PGKSLKKSSEEI+ KKSELIPSAHVKKNH
Sbjct: 18  MNDKEDETPNMSEARTTSTVEVSKADNPSDDPGKSLKKSSEEIITKKSELIPSAHVKKNH 77

Query: 61  PASSIISDPSVGMQTRRKDKIDYLKMVANLCYISTIESLTVDSALKDEYWLNAMQEELLQ 120
           PASSII DPS GMQTRRK+KIDY+KMV +LCY STIE  TVDSALKDEYWLNAMQEELLQ
Sbjct: 78  PASSIIGDPSAGMQTRRKEKIDYMKMVVDLCYTSTIEPSTVDSALKDEYWLNAMQEELLQ 137

Query: 121 YRQNNVWTLVSKPEGVNVIGTKYIFKNKSDETGCVTKNKARLVAQGYTQVEGVDFDETFS 180
           +RQNNVWTLVSKPE VNVIGTK +FKNK+ E GCVTKNKARLVAQGYTQV+G+DFDETF+
Sbjct: 138 FRQNNVWTLVSKPEDVNVIGTKLVFKNKTGEVGCVTKNKARLVAQGYTQVKGIDFDETFA 197

Query: 181 PVA 184
           PVA
Sbjct: 198 PVA 200

[Close]

BLAST of Cmc01g0013351 vs. NCBI nr
Match: TYK29237.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 302.0 bits (772), Expect = 3.5e-78
Identity = 160/184 (86.96%), Postives = 169/184 (91.85%), Query Frame = 0


Query: 1   MNDEKDETPNMSEVRTTSTVEESKADNSSDGPGKSLKKSSEEIVNKKSELIPSAHVKKNH 60
           MNDE+DETPNMSEVRTTSTVEESKADNSSD P KSLKKSSEEI+NKKS+LI SAHVKKNH
Sbjct: 489 MNDEEDETPNMSEVRTTSTVEESKADNSSDSPEKSLKKSSEEIINKKSKLISSAHVKKNH 548

Query: 61  PASSIISDPSVGMQTRRKDKIDYLKMVANLCYISTIESLTVD-SALKDEYWLNAMQEELL 120
           PASSII DPS GMQTRRKDKIDYLKMVA+LCYIS+IE  TVD SA KDEYWLNAMQEELL
Sbjct: 549 PASSIIGDPSAGMQTRRKDKIDYLKMVADLCYISSIEHSTVDHSAFKDEYWLNAMQEELL 608

Query: 121 QYRQNNVWTLVSKPEGVNVIGTKYIFKNKSDETGCVTKNKARLVAQGYTQVEGVDFDETF 180
           + R NNVW LV KP GVNVIGTK+IFKNK+DE GCVTKNKARLVAQGYTQVEGVDFDETF
Sbjct: 609 KLR-NNVWMLVLKPVGVNVIGTKWIFKNKTDEIGCVTKNKARLVAQGYTQVEGVDFDETF 668

Query: 181 SPVA 184
           +PVA
Sbjct: 669 APVA 671

[Close]

BLAST of Cmc01g0013351 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-15
Identity = 50/112 (44.64%), Postives = 65/112 (58.04%), Query Frame = 0


Query: 73  MQTRRKDKIDYLKMVANLCYISTI--ESLTVDSALKDEYWLNAMQEELLQYRQNNVWTLV 132
           M TR K  I+ L    +L   +TI  E  +V  ALKD  W  AMQEEL    +N  W LV
Sbjct: 1   MLTRSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILV 60

Query: 133 SKPEGVNVIGTKYIFKNKSDETGCVTKNKARLVAQGYTQVEGVDFDETFSPV 183
             P   N++G K++FK K    G + + KARLVA+G+ Q EG+ F ET+SPV
Sbjct: 61  PPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPV 112

[Close]

BLAST of Cmc01g0013351 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.6e-12
Identity = 58/167 (34.73%), Postives = 80/167 (47.90%), Query Frame = 0


Query: 25   ADNSSDGPGKSLKKSSEEIVNKKSELIPSAHVKKNHPASSIISDPSV------GMQTRRK 84
            A +SS  P  +   SS    +  S   PS  +    P + I+++ +        M TR K
Sbjct: 879  AQSSSSSPSPTTSASS----SSTSPTPPSILIHPPPPLAQIVNNNNQAPLNTHSMGTRAK 938

Query: 85   DKIDYLKMVANLCYISTIES--LTVDSALKDEYWLNAMQEELLQYRQNNVWTLVSKPEG- 144
              I       +L      ES   T   ALKDE W NAM  E+     N+ W LV  P   
Sbjct: 939  AGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSH 998

Query: 145  VNVIGTKYIFKNKSDETGCVTKNKARLVAQGYTQVEGVDFDETFSPV 183
            V ++G ++IF  K +  G + + KARLVA+GY Q  G+D+ ETFSPV
Sbjct: 999  VTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPV 1041

[Close]

BLAST of Cmc01g0013351 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.6e-12
Identity = 45/115 (39.13%), Postives = 62/115 (53.91%), Query Frame = 0


Query: 73   MQTRRKDKIDYLKMVANLCYISTI----ESLTVDSALKDEYWLNAMQEELLQYRQNNVWT 132
            M TR KD I   K      Y +++    E  T   A+KD+ W  AM  E+     N+ W 
Sbjct: 912  MATRAKDGI--RKPNQKYSYATSLAANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWD 971

Query: 133  LV-SKPEGVNVIGTKYIFKNKSDETGCVTKNKARLVAQGYTQVEGVDFDETFSPV 183
            LV   P  V ++G ++IF  K +  G + + KARLVA+GY Q  G+D+ ETFSPV
Sbjct: 972  LVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPV 1024

[Close]

BLAST of Cmc01g0013351 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 72.4 bits (176), Expect = 6.0e-12
Identity = 31/74 (41.89%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 110 WLNAMQEELLQYRQNNVWTLVSKPEGVNVIGTKYIFKNKSDETGCVTKNKARLVAQGYTQ 169
           W  A+  EL  ++ NN WT+  +PE  N++ ++++F  K +E G   + KARLVA+G+TQ
Sbjct: 906 WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965

Query: 170 VEGVDFDETFSPVA 184
              +D++ETF+PVA
Sbjct: 966 KYQIDYEETFAPVA 979

[Close]

BLAST of Cmc01g0013351 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-07
Identity = 54/180 (30.00%), Postives = 88/180 (48.89%), Query Frame = 0


Query: 9   PNMSEVRTTS---TVEESKADNSS---DGPGKSLKKSSEEIVNKKSELIPSAHVKKNHPA 68
           PN   + +TS   T  ES  D  S   + PG+ +++  E++     E+      ++ H  
Sbjct: 725 PNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQ-GEQLDEGVEEVEHPTQGEEQHQP 784

Query: 69  SSIISDPSVGMQTRRKDKIDYLKMVANLCYISTIESLTVDSALKDEYWLNAMQEELLQYR 128
                 P V  ++RR    +Y+ +  +    S  E L   S  +    + AMQEE+   +
Sbjct: 785 LRRSERPRV--ESRRYPSTEYVLISDDREPESLKEVL---SHPEKNQLMKAMQEEMESLQ 844

Query: 129 QNNVWTLVSKPEGVNVIGTKYIFKNKSDETGCVTKNKARLVAQGYTQVEGVDFDETFSPV 183
           +N  + LV  P+G   +  K++FK K D    + + KARLV +G+ Q +G+DFDE FSPV
Sbjct: 845 KNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPV 898

[Close]

BLAST of Cmc01g0013351 vs. ExPASy TrEMBL
Match: A0A5A7U1W3 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G001420 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.4e-93
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MNDEKDETPNMSEVRTTSTVEESKADNSSDGPGKSLKKSSEEIVNKKSELIPSAHVKKNH 60
           MNDEKDETPNMSEVRTTSTVEESKADNSSDGPGKSLKKSSEEIVNKKSELIPSAHVKKNH
Sbjct: 1   MNDEKDETPNMSEVRTTSTVEESKADNSSDGPGKSLKKSSEEIVNKKSELIPSAHVKKNH 60

Query: 61  PASSIISDPSVGMQTRRKDKIDYLKMVANLCYISTIESLTVDSALKDEYWLNAMQEELLQ 120
           PASSIISDPSVGMQTRRKDKIDYLKMVANLCYISTIESLTVDSALKDEYWLNAMQEELLQ
Sbjct: 61  PASSIISDPSVGMQTRRKDKIDYLKMVANLCYISTIESLTVDSALKDEYWLNAMQEELLQ 120

Query: 121 YRQNNVWTLVSKPEGVNVIGTKYIFKNKSDETGCVTKNKARLVAQGYTQVEGVDFDETFS 180
           YRQNNVWTLVSKPEGVNVIGTKYIFKNKSDETGCVTKNKARLVAQGYTQVEGVDFDETFS
Sbjct: 121 YRQNNVWTLVSKPEGVNVIGTKYIFKNKSDETGCVTKNKARLVAQGYTQVEGVDFDETFS 180

Query: 181 PVA 184
            VA
Sbjct: 181 HVA 183

[Close]

BLAST of Cmc01g0013351 vs. ExPASy TrEMBL
Match: A0A5D3CA21 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001740 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 7.2e-93
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MNDEKDETPNMSEVRTTSTVEESKADNSSDGPGKSLKKSSEEIVNKKSELIPSAHVKKNH 60
           MNDEKDETPNMSEVRTTSTVEESKADNSSDGPGKSLKKSSEEIVNKKSELIPSAHVKKNH
Sbjct: 1   MNDEKDETPNMSEVRTTSTVEESKADNSSDGPGKSLKKSSEEIVNKKSELIPSAHVKKNH 60

Query: 61  PASSIISDPSVGMQTRRKDKIDYLKMVANLCYISTIESLTVDSALKDEYWLNAMQEELLQ 120
           PASSIISDPSVGMQTRRKDKIDYLKMVANLCYISTIESLTVDSALKDEYWLNAMQEELLQ
Sbjct: 61  PASSIISDPSVGMQTRRKDKIDYLKMVANLCYISTIESLTVDSALKDEYWLNAMQEELLQ 120

Query: 121 YRQNNVWTLVSKPEGVNVIGTKYIFKNKSDETGCVTKNKARLVAQGYTQVEGVDFDETFS 180
           YRQNNVWTLVSKPEGVNVIGTKYIFKNKSDETGCVTKNKARLVAQGYTQVEGVDFDETFS
Sbjct: 121 YRQNNVWTLVSKPEGVNVIGTKYIFKNKSDETGCVTKNKARLVAQGYTQVEGVDFDETFS 180

[Close]

BLAST of Cmc01g0013351 vs. ExPASy TrEMBL
Match: A0A5A7T0Q0 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002510 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 9.7e-82
Identity = 163/184 (88.59%), Postives = 172/184 (93.48%), Query Frame = 0


Query: 1   MNDEKDETPNMSEVRTTSTVEESKADNSSDGPGKSLKKSSEEIVNKKSELIPSAHVKKNH 60
           MNDE+DETPNMSEVRTTSTVEESKADNSSD  GKSLKKS EEI+NKKS+LIPSAHVKKNH
Sbjct: 503 MNDEEDETPNMSEVRTTSTVEESKADNSSDSLGKSLKKSLEEIINKKSKLIPSAHVKKNH 562

Query: 61  PASSIISDPSVGMQTRRKDKIDYLKMVANLCYISTIESLTVD-SALKDEYWLNAMQEELL 120
           PASSII DPS GMQTRRKDKIDYLKMVA+LCYISTIE  TVD SALKDEYWLNAMQEELL
Sbjct: 563 PASSIIGDPSAGMQTRRKDKIDYLKMVADLCYISTIEHSTVDHSALKDEYWLNAMQEELL 622

Query: 121 QYRQNNVWTLVSKPEGVNVIGTKYIFKNKSDETGCVTKNKARLVAQGYTQVEGVDFDETF 180
           Q+R+NNVW LV KP GVNVIGTK+IFKNK+DE GCVTKNKARLVAQGYTQVEGVDFDETF
Sbjct: 623 QFRRNNVWMLVLKPVGVNVIGTKWIFKNKTDEIGCVTKNKARLVAQGYTQVEGVDFDETF 682

Query: 181 SPVA 184
           +PVA
Sbjct: 683 APVA 686

[Close]

BLAST of Cmc01g0013351 vs. ExPASy TrEMBL
Match: A0A5D3CNZ6 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G001080 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 1.1e-80
Identity = 156/183 (85.25%), Postives = 168/183 (91.80%), Query Frame = 0


Query: 1   MNDEKDETPNMSEVRTTSTVEESKADNSSDGPGKSLKKSSEEIVNKKSELIPSAHVKKNH 60
           MND++DETPNMSE RTTSTVE SKADN SD PGKSLKKSSEEI+ KKSELIPSAHVKKNH
Sbjct: 18  MNDKEDETPNMSEARTTSTVEVSKADNPSDDPGKSLKKSSEEIITKKSELIPSAHVKKNH 77

Query: 61  PASSIISDPSVGMQTRRKDKIDYLKMVANLCYISTIESLTVDSALKDEYWLNAMQEELLQ 120
           PASSII DPS GMQTRRK+KIDY+KMV +LCY STIE  TVDSALKDEYWLNAMQEELLQ
Sbjct: 78  PASSIIGDPSAGMQTRRKEKIDYMKMVVDLCYTSTIEPSTVDSALKDEYWLNAMQEELLQ 137

Query: 121 YRQNNVWTLVSKPEGVNVIGTKYIFKNKSDETGCVTKNKARLVAQGYTQVEGVDFDETFS 180
           +RQNNVWTLVSKPE VNVIGTK +FKNK+ E GCVTKNKARLVAQGYTQV+G+DFDETF+
Sbjct: 138 FRQNNVWTLVSKPEDVNVIGTKLVFKNKTGEVGCVTKNKARLVAQGYTQVKGIDFDETFA 197

Query: 181 PVA 184
           PVA
Sbjct: 198 PVA 200

[Close]

BLAST of Cmc01g0013351 vs. ExPASy TrEMBL
Match: A0A5D3DZD2 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1228G00280 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.7e-78
Identity = 160/184 (86.96%), Postives = 169/184 (91.85%), Query Frame = 0


Query: 1   MNDEKDETPNMSEVRTTSTVEESKADNSSDGPGKSLKKSSEEIVNKKSELIPSAHVKKNH 60
           MNDE+DETPNMSEVRTTSTVEESKADNSSD P KSLKKSSEEI+NKKS+LI SAHVKKNH
Sbjct: 489 MNDEEDETPNMSEVRTTSTVEESKADNSSDSPEKSLKKSSEEIINKKSKLISSAHVKKNH 548

Query: 61  PASSIISDPSVGMQTRRKDKIDYLKMVANLCYISTIESLTVD-SALKDEYWLNAMQEELL 120
           PASSII DPS GMQTRRKDKIDYLKMVA+LCYIS+IE  TVD SA KDEYWLNAMQEELL
Sbjct: 549 PASSIIGDPSAGMQTRRKDKIDYLKMVADLCYISSIEHSTVDHSAFKDEYWLNAMQEELL 608

Query: 121 QYRQNNVWTLVSKPEGVNVIGTKYIFKNKSDETGCVTKNKARLVAQGYTQVEGVDFDETF 180
           + R NNVW LV KP GVNVIGTK+IFKNK+DE GCVTKNKARLVAQGYTQVEGVDFDETF
Sbjct: 609 KLR-NNVWMLVLKPVGVNVIGTKWIFKNKTDEIGCVTKNKARLVAQGYTQVEGVDFDETF 668

Query: 181 SPVA 184
           +PVA
Sbjct: 669 APVA 671

[Close]

BLAST of Cmc01g0013351 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 84.7 bits (208), Expect = 8.3e-17
Identity = 50/112 (44.64%), Postives = 65/112 (58.04%), Query Frame = 0


Query: 73  MQTRRKDKIDYLKMVANLCYISTI--ESLTVDSALKDEYWLNAMQEELLQYRQNNVWTLV 132
           M TR K  I+ L    +L   +TI  E  +V  ALKD  W  AMQEEL    +N  W LV
Sbjct: 1   MLTRSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILV 60

Query: 133 SKPEGVNVIGTKYIFKNKSDETGCVTKNKARLVAQGYTQVEGVDFDETFSPV 183
             P   N++G K++FK K    G + + KARLVA+G+ Q EG+ F ET+SPV
Sbjct: 61  PPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPV 112

[Close]

BLAST of Cmc01g0013351 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 74.7 bits (182), Expect = 8.6e-14
Identity = 51/162 (31.48%), Postives = 76/162 (46.91%), Query Frame = 0


Query: 49  ELIPSAHVKKNHPASSIISDPSVGMQTRRKDKIDYLK-----MVANL------------- 108
           +++PSA+++ + P      +PSV    RR  K  YL+      VA+L             
Sbjct: 15  DIMPSANIQNDVP------EPSVHTSHRRTRKPAYLQDYYCHSVASLTIHDISQFLSYEK 74

Query: 109 ----------CYISTIESLTVDSALKDEYWLNAMQEELLQYRQNNVWTLVSKPEGVNVIG 168
                     C     E  T + A +   W  AM +E+      + W + + P     IG
Sbjct: 75  VSPLYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIG 134

Query: 169 TKYIFKNKSDETGCVTKNKARLVAQGYTQVEGVDFDETFSPV 183
            K+++K K +  G + + KARLVA+GYTQ EG+DF ETFSPV
Sbjct: 135 CKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPV 170

The following BLAST results are available for this feature:

BLAST of Cmc01g0013351 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048227.1	3.0e-93	99.45	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
TYK08028.1	1.5e-92	100.00	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0035157.1	2.0e-81	88.59	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK13607.1	2.2e-80	85.25	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK29237.1	3.5e-78	86.96	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0013351 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92520	1.2e-15	44.64	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q94HW2	4.6e-12	34.73	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	4.6e-12	39.13	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	6.0e-12	41.89	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	1.5e-07	30.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Cmc01g0013351 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U1W3	1.4e-93	99.45	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3CA21	7.2e-93	100.00	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G...	[more]
A0A5A7T0Q0	9.7e-82	88.59	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G0...	[more]
A0A5D3CNZ6	1.1e-80	85.25	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G...	[more]
A0A5D3DZD2	1.7e-78	86.96	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1228...	[more]

BLAST of Cmc01g0013351 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00820.1	8.3e-17	44.64	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
AT4G23160.1	8.6e-14	31.48	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 124..183 e-value: 1.4E-16 score: 60.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0013351.1	Cmc01g0013351.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding