Cmc01g0013231 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0013231
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr01: 9827958 .. 9828674 (+)
RNA-Seq Expression	Cmc01g0013231
Synteny	Cmc01g0013231

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTCAGCTAAAGCAGTGGGAGATTTAAAGTTGTATTTTGGAAATAGATATATCATACTTAAGAATATCTTGTATGTACCACAAATGAAAAGAAATTTAATATCTATTTCTTGTATTTTGGAACACATGTATAAGATATCTTTTAAAATTAATGAAGCGTTCATTTTCTATAAAGGTATCCAAATCTGTTCTGCTATACATGAAAACAACTTATATGAGTTAAGACCAACACGAGCAAATTTTGTCTTAAATACTGAAATGTTTAGAACAGCTGAAACTCAGAATAAAGTTTCTTCTAATGCCTATTTAGGCCACTTGAGACTTTGTCACATAAATCTCAATAGGATTGGGAGATTAGTTAAAAGTGGACTTCCAAGTAAGTTAGAAGATAACCCTTTACCTCCTTGTGAATCTTGTCTTAAAGGAAAAATGACTAAGAGATCTTTTACTGGAAAATGTCTCAGAGCCAAAATTCCTTTAGAGCTCGTACATTCGGACCTTTGTGGACCAATGAACGTCAAAGCTCAAGGAGGGTACGAATATTTCATTAGTTTTGTTGATGATTATTCGAGGTACGGTCATGTTTATCTAATTCATCACAAGTCTGGTTATTTTGAAAAATTCAAAGGATATAAGGCTGAAGTTGAGAATGAATTAGGTAAGACAATAAAAATACTTCGATCAGATCGAGGTGGAGAATATTTGGACTTATGA

mRNA sequence

ATGGTCTCAGCTAAAGCAGTGGGAGATTTAAAGTTGTATTTTGGAAATAGATATATCATACTTAAGAATATCTTGTATGTACCACAAATGAAAAGAAATTTAATATCTATTTCTTGTATTTTGGAACACATGTATAAGATATCTTTTAAAATTAATGAAGCGTTCATTTTCTATAAAGGTATCCAAATCTGTTCTGCTATACATGAAAACAACTTATATGAGTTAAGACCAACACGAGCAAATTTTGTCTTAAATACTGAAATGTTTAGAACAGCTGAAACTCAGAATAAAGTTTCTTCTAATGCCTATTTAGGCCACTTGAGACTTTGTCACATAAATCTCAATAGGATTGGGAGATTAGTTAAAAGTGGACTTCCAAGTAAGTTAGAAGATAACCCTTTACCTCCTTGTGAATCTTGTCTTAAAGGAAAAATGACTAAGAGATCTTTTACTGGAAAATGTCTCAGAGCCAAAATTCCTTTAGAGCTCGTACATTCGGACCTTTGTGGACCAATGAACGTCAAAGCTCAAGGAGGGTACGAATATTTCATTAGTTTTGTTGATGATTATTCGAGGTACGGTCATGTTTATCTAATTCATCACAAGTCTGGTTATTTTGAAAAATTCAAAGGATATAAGGCTGAAGTTGAGAATGAATTAGGTAAGACAATAAAAATACTTCGATCAGATCGAGGTGGAGAATATTTGGACTTATGA

Coding sequence (CDS)

ATGGTCTCAGCTAAAGCAGTGGGAGATTTAAAGTTGTATTTTGGAAATAGATATATCATACTTAAGAATATCTTGTATGTACCACAAATGAAAAGAAATTTAATATCTATTTCTTGTATTTTGGAACACATGTATAAGATATCTTTTAAAATTAATGAAGCGTTCATTTTCTATAAAGGTATCCAAATCTGTTCTGCTATACATGAAAACAACTTATATGAGTTAAGACCAACACGAGCAAATTTTGTCTTAAATACTGAAATGTTTAGAACAGCTGAAACTCAGAATAAAGTTTCTTCTAATGCCTATTTAGGCCACTTGAGACTTTGTCACATAAATCTCAATAGGATTGGGAGATTAGTTAAAAGTGGACTTCCAAGTAAGTTAGAAGATAACCCTTTACCTCCTTGTGAATCTTGTCTTAAAGGAAAAATGACTAAGAGATCTTTTACTGGAAAATGTCTCAGAGCCAAAATTCCTTTAGAGCTCGTACATTCGGACCTTTGTGGACCAATGAACGTCAAAGCTCAAGGAGGGTACGAATATTTCATTAGTTTTGTTGATGATTATTCGAGGTACGGTCATGTTTATCTAATTCATCACAAGTCTGGTTATTTTGAAAAATTCAAAGGATATAAGGCTGAAGTTGAGAATGAATTAGGTAAGACAATAAAAATACTTCGATCAGATCGAGGTGGAGAATATTTGGACTTATGA

Protein sequence

MVSAKAVGDLKLYFGNRYIILKNILYVPQMKRNLISISCILEHMYKISFKINEAFIFYKGIQICSAIHENNLYELRPTRANFVLNTEMFRTAETQNKVSSNAYLGHLRLCHINLNRIGRLVKSGLPSKLEDNPLPPCESCLKGKMTKRSFTGKCLRAKIPLELVHSDLCGPMNVKAQGGYEYFISFVDDYSRYGHVYLIHHKSGYFEKFKGYKAEVENELGKTIKILRSDRGGEYLDL

Homology

[Close]

BLAST of Cmc01g0013231 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 393.3 bits (1009), Expect = 1.5e-105
Identity = 194/240 (80.83%), Postives = 217/240 (90.42%), Query Frame = 0


Query: 1   MVSAKAVGDLKLYFGNRYIILKNILYVPQMKRNLISISCILEHMYKISFKINEAFIFYKG 60
           +VSA+AVGDL L+F +RY+ILK++LYVP MKRNLISI+CILEH+Y ISF++NE FI  KG
Sbjct: 338 VVSAEAVGDLTLFFQDRYLILKDVLYVPLMKRNLISIACILEHIYTISFEVNEVFILCKG 397

Query: 61  IQICSAIHENNLYELRPTRANFVLNTEMFRTAETQN---KVSSNAYLGHLRLCHINLNRI 120
           IQICSAI ENNLY+LRPTRAN VLNTEMFRT ETQN   KVSSNAYL HLRL HINLNRI
Sbjct: 398 IQICSAIRENNLYKLRPTRANVVLNTEMFRTLETQNKKQKVSSNAYLWHLRLGHINLNRI 457

Query: 121 GRLVKSGLPSKLEDNPLPPCESCLKGKMTKRSFTGKCLRAKIPLELVHSDLCGPMNVKAQ 180
            RLVKSG+ ++LEDN LPPCESCL+GKMTKRSFTGK LRAK+PLELVHSDLCGPMNVKA+
Sbjct: 458 ERLVKSGILNQLEDNSLPPCESCLEGKMTKRSFTGKGLRAKVPLELVHSDLCGPMNVKAR 517

Query: 181 GGYEYFISFVDDYSRYGHVYLIHHKSGYFEKFKGYKAEVENELGKTIKILRSDRGGEYLD 238
           GGYEYFISF+DD+SRYGHVYL+HHKS  FEKFK YKAEVENE+GKTIK LRSDRGGEY+D
Sbjct: 518 GGYEYFISFIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMD 577

[Close]

BLAST of Cmc01g0013231 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 340.9 bits (873), Expect = 8.9e-90
Identity = 166/243 (68.31%), Postives = 200/243 (82.30%), Query Frame = 0


Query: 1   MVSAKAVGDLKLYFGNRYIILKNILYVPQMKRNLISISCILEHMYKISFKINEAFIFYKG 60
           ++SA+AVGD KL+FGN+++ L+N+  VP++KRNL+S+SC++EHMY I+F +NEAFI+  G
Sbjct: 242 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFIYKNG 301

Query: 61  IQICSAIHENNLYELRPTRANFVLNTEMFRTAETQNK-----VSSNAYLGHLRLCHINLN 120
           + ICSA  ENNLY LRP  A  VLN EMFRTA TQNK      ++N YL HLRL HINL+
Sbjct: 302 VHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLGHINLD 361

Query: 121 RIGRLVKSGLPSKLEDNPLPPCESCLKGKMTKRSFTGKCLRAKIPLELVHSDLCGPMNVK 180
           RIGRLVK+GL +KL+D  LPPCESCL+GKMTKR FTGK  RAK PLEL+HSDLCGPMNVK
Sbjct: 362 RIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 421

Query: 181 AQGGYEYFISFVDDYSRYGHVYLIHHKSGYFEKFKGYKAEVENELGKTIKILRSDRGGEY 239
           A+GG+EYFISF+DDYSRYG++YL+ HKS   EKFK YK EVEN L K IKILRSDRGGEY
Sbjct: 422 ARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEY 481

[Close]

BLAST of Cmc01g0013231 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 336.7 bits (862), Expect = 1.7e-88
Identity = 164/243 (67.49%), Postives = 197/243 (81.07%), Query Frame = 0


Query: 1   MVSAKAVGDLKLYFGNRYIILKNILYVPQMKRNLISISCILEHMYKISFKINEAFIFYKG 60
           ++SA+AVGD KL+FGN+++ L+N+  VP++KRNL+S+SC++EHMY I+F +NEAFI+  G
Sbjct: 242 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFIYKNG 301

Query: 61  IQICSAIHENNLYELRPTRANFVLNTEMFRTAETQNK-----VSSNAYLGHLRLCHINLN 120
           + ICSA  ENNLY LRP  A  VLN EMFRTA TQNK      ++N YL HLRL HINL+
Sbjct: 302 VHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLGHINLD 361

Query: 121 RIGRLVKSGLPSKLEDNPLPPCESCLKGKMTKRSFTGKCLRAKIPLELVHSDLCGPMNVK 180
           RIGRLVK GL +KL+D  LPPCESCL+GKMTKR FTGK  RAK PLEL+HSDLCGPMNVK
Sbjct: 362 RIGRLVKDGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 421

Query: 181 AQGGYEYFISFVDDYSRYGHVYLIHHKSGYFEKFKGYKAEVENELGKTIKILRSDRGGEY 239
           A+G +EYFISF+DDYSRYG++YL+ HKS   EKFK YK EVEN L K IKI RSDRGGEY
Sbjct: 422 ARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKIFRSDRGGEY 481

[Close]

BLAST of Cmc01g0013231 vs. NCBI nr
Match: KAA0060534.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 334.3 bits (856), Expect = 8.4e-88
Identity = 164/243 (67.49%), Postives = 196/243 (80.66%), Query Frame = 0


Query: 1   MVSAKAVGDLKLYFGNRYIILKNILYVPQMKRNLISISCILEHMYKISFKINEAFIFYKG 60
           ++SA+AVGD KL+FGN+++ L+N+  VP++KRNL+S+SC++EHMY ISF +NEAFI   G
Sbjct: 214 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSISFSMNEAFISKNG 273

Query: 61  IQICSAIHENNLYELRPTRANFVLNTEMFRTAETQNK-----VSSNAYLGHLRLCHINLN 120
           + ICS   E+NLY L+P     VLN EMFRTA TQNK      ++N YL HLRL HINL+
Sbjct: 274 VHICSVKLEDNLYVLKPNEGKAVLNHEMFRTANTQNKRQRISSNNNTYLWHLRLGHINLD 333

Query: 121 RIGRLVKSGLPSKLEDNPLPPCESCLKGKMTKRSFTGKCLRAKIPLELVHSDLCGPMNVK 180
           RIGRLVK+GL +KLED+ LPPCESCL+GKMTKR FTGK  RAK PLEL+HSDLCGPMNVK
Sbjct: 334 RIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 393

Query: 181 AQGGYEYFISFVDDYSRYGHVYLIHHKSGYFEKFKGYKAEVENELGKTIKILRSDRGGEY 239
           A GG+EYFISF+DDYS YG++YLI HKS   EKFK YK EVEN L K IKILRSDRGGEY
Sbjct: 394 AIGGFEYFISFIDDYSMYGYLYLIEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEY 453

[Close]

BLAST of Cmc01g0013231 vs. NCBI nr
Match: KAA0067938.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 318.9 bits (816), Expect = 3.6e-83
Identity = 158/243 (65.02%), Postives = 195/243 (80.25%), Query Frame = 0


Query: 1   MVSAKAVGDLKLYFGNRYIILKNILYVPQMKRNLISISCILEHMYKISFKINEAFIFYKG 60
           ++SA+AVGD+KL+FG +++ L+N+  VP++KRNL+ +SC++EHMY I+F +NEAFI   G
Sbjct: 217 VISARAVGDVKLFFGIKFMFLENLYIVPKIKRNLVFVSCLIEHMYSINFSMNEAFISKNG 276

Query: 61  IQICSAIHENNLYELRPTRANFVLNTEMFRTAETQNK-----VSSNAYLGHLRLCHINLN 120
            ++     E+NLY LRP  A  VLN EMFRTA TQNK      ++N YL HLRL HINL+
Sbjct: 277 AKL-----EDNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLDHINLD 336

Query: 121 RIGRLVKSGLPSKLEDNPLPPCESCLKGKMTKRSFTGKCLRAKIPLELVHSDLCGPMNVK 180
           RIGRLVK+GL +KL+D+ LPPCESCL+GKMTKR FTGK  RAK PLEL+HSDLCGPMNVK
Sbjct: 337 RIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKDYRAKEPLELIHSDLCGPMNVK 396

Query: 181 AQGGYEYFISFVDDYSRYGHVYLIHHKSGYFEKFKGYKAEVENELGKTIKILRSDRGGEY 239
           A+GG+EYFISF+DDYSRYG++YL+ HK    EKFK YK EVEN L K IKILRSDRGGEY
Sbjct: 397 ARGGFEYFISFIDDYSRYGYLYLMEHKYEALEKFKEYKTEVENLLSKKIKILRSDRGGEY 454

[Close]

BLAST of Cmc01g0013231 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.1e-25
Identity = 74/218 (33.94%), Postives = 117/218 (53.67%), Query Frame = 0


Query: 19  IILKNILYVPQMKRNLISISCILEHMYKISFKINEAFIFYKG-IQICSAIHENNLYELRP 78
           ++LK++ +VP ++ NLIS   +    Y+ S+  N+ +   KG + I   +    LY    
Sbjct: 348 LVLKDVRHVPDLRMNLISGIALDRDGYE-SYFANQKWRLTKGSLVIAKGVARGTLYRTNA 407

Query: 79  TRANFVLNTEMFRTAETQNKVSSNAYLGHLRLCHINLNRIGRLVKSGLPSKLEDNPLPPC 138
                 LN         Q+++S +  L H R+ H++   +  L K  L S  +   + PC
Sbjct: 408 EICQGELNA-------AQDEISVD--LWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPC 467

Query: 139 ESCLKGKMTKRSFTGKCLRAKIPLELVHSDLCGPMNVKAQGGYEYFISFVDDYSRYGHVY 198
           + CL GK  + SF     R    L+LV+SD+CGPM +++ GG +YF++F+DD SR   VY
Sbjct: 468 DYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVY 527

Query: 199 LIHHKSGYFEKFKGYKAEVENELGKTIKILRSDRGGEY 236
           ++  K   F+ F+ + A VE E G+ +K LRSD GGEY
Sbjct: 528 ILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEY 555

[Close]

BLAST of Cmc01g0013231 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.4e-13
Identity = 64/238 (26.89%), Postives = 111/238 (46.64%), Query Frame = 0


Query: 8   GDLKLYFGNRYIILKNILYVPQMKRNLISI------SCILEHMYKISFKINEAFIFYKGI 67
           G   L   +R + L  +LYVP + +NLIS+      + +    +  SF++ +      G+
Sbjct: 353 GSASLPTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKD---LNTGV 412

Query: 68  QICSAIHENNLYELRPTRANFVLNTEMFRTAETQNKVSSNAYLGHLRLCHINLNRIGRLV 127
            +     ++ LYE     +  V    MF  A   +K + +++  H RL H +L  +  ++
Sbjct: 413 PLLQGKTKDELYEWPIASSQAV---SMF--ASPCSKATHSSW--HSRLGHPSLAILNSVI 472

Query: 128 KS-GLPSKLEDNPLPPCESCLKGKMTKRSFTGKCLRAKIPLELVHSDLCGPMNVKAQGGY 187
            +  LP     + L  C  C   K  K  F+   + +  PLE ++SD+     + +   Y
Sbjct: 473 SNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS-SPILSIDNY 532

Query: 188 EYFISFVDDYSRYGHVYLIHHKSGYFEKFKGYKAEVENELGKTIKILRSDRGGEYLDL 239
            Y++ FVD ++RY  +Y +  KS   + F  +K+ VEN     I  L SD GGE++ L
Sbjct: 533 RYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVL 579

[Close]

BLAST of Cmc01g0013231 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-12
Identity = 66/230 (28.70%), Postives = 101/230 (43.91%), Query Frame = 0


Query: 19  IILKNILYVPQMKRNLISISCILEHMYKISFKINEAFIFYKGIQICSAIHENNLYELRPT 78
           I L+++L+  +   NL+S+  + E    I F  +   I   G+ +   +  + +    P 
Sbjct: 343 ITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMV---VKNSGMLNNVP- 402

Query: 79  RANFVLNTEMFRTAETQNKVSSNAYLGHLRLCHINLNRIGRLVKSGLPSKLEDNPL---- 138
               V+N   F+      K  +N  L H R  HI+    G+L++    +   D  L    
Sbjct: 403 ----VIN---FQAYSINAKHKNNFRLWHERFGHIS---DGKLLEIKRKNMFSDQSLLNNL 462

Query: 139 ----PPCESCLKGKMTKRSFTGKCLRAKI----PLELVHSDLCGPMNVKAQGGYEYFISF 198
                 CE CL GK  +  F  K L+ K     PL +VHSD+CGP+         YF+ F
Sbjct: 463 ELSCEICEPCLNGKQARLPF--KQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIF 522

Query: 199 VDDYSRYGHVYLIHHKSGYFEKFKGYKAEVENELGKTIKILRSDRGGEYL 237
           VD ++ Y   YLI +KS  F  F+ + A+ E      +  L  D G EYL
Sbjct: 523 VDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYL 556

[Close]

BLAST of Cmc01g0013231 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.5e-12
Identity = 63/238 (26.47%), Postives = 109/238 (45.80%), Query Frame = 0


Query: 8   GDLKLYFGNRYIILKNILYVPQMKRNLISI------SCILEHMYKISFKINEAFIFYKGI 67
           G   L   +R + L NILYVP + +NLIS+      + +    +  SF++ +      G+
Sbjct: 374 GSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKD---LNTGV 433

Query: 68  QICSAIHENNLYELRPTRANFVLNTEMFRTAETQNKVSSNAYLGHLRLCHINLNRIGRLV 127
            +     ++ LYE     +  V    +F  A   +K + +++  H RL H   + +  ++
Sbjct: 434 PLLQGKTKDELYEWPIASSQPV---SLF--ASPSSKATHSSW--HARLGHPAPSILNSVI 493

Query: 128 KSGLPSKLE-DNPLPPCESCLKGKMTKRSFTGKCLRAKIPLELVHSDLCGPMNVKAQGGY 187
            +   S L   +    C  CL  K  K  F+   + +  PLE ++SD+     + +   Y
Sbjct: 494 SNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-SPILSHDNY 553

Query: 188 EYFISFVDDYSRYGHVYLIHHKSGYFEKFKGYKAEVENELGKTIKILRSDRGGEYLDL 239
            Y++ FVD ++RY  +Y +  KS   E F  +K  +EN     I    SD GGE++ L
Sbjct: 554 RYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVAL 600

[Close]

BLAST of Cmc01g0013231 vs. ExPASy Swiss-Prot
Match: Q07791 (Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-DR3 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-09
Identity = 62/252 (24.60%), Postives = 108/252 (42.86%), Query Frame = 0


Query: 2   VSAKAVGDLKLYFGNRYIILKNILYVPQMKRNLISISCILEHMYKISFKINEAFIFYKGI 61
           +   A+G+L   F N        L+ P +  +L+S+S +        F  N       G 
Sbjct: 490 IPINAIGNLHFNFQNGTKTSIKALHTPNIAYDLLSLSELANQNITACFTRN-TLERSDGT 549

Query: 62  QICSAIHENNLYELRPTRANFVLNTEMFR-TAETQNKVSS-NAY---LGHLRLCHINLNR 121
            +   +   + Y L      +++ + + + T    NK  S N Y   L H  L H N   
Sbjct: 550 VLAPIVKHGDFYWL---SKKYLIPSHISKLTINNVNKSKSVNKYPYPLIHRMLGHANFRS 609

Query: 122 IGRLVKSGLPSKLEDNPLP-------PCESCLKGKMTK-RSFTGKCLR---AKIPLELVH 181
           I + +K    + L+++ +         C  CL GK TK R   G  L+   +  P + +H
Sbjct: 610 IQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHIKGSRLKYQESYEPFQYLH 669

Query: 182 SDLCGPMNVKAQGGYEYFISFVDDYSRYGHVYLIH--HKSGYFEKFKGYKAEVENELGKT 236
           +D+ GP++   +    YFISF D+ +R+  VY +H   +      F    A ++N+    
Sbjct: 670 TDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNAR 729

[Close]

BLAST of Cmc01g0013231 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 7.3e-106
Identity = 194/240 (80.83%), Postives = 217/240 (90.42%), Query Frame = 0


Query: 1   MVSAKAVGDLKLYFGNRYIILKNILYVPQMKRNLISISCILEHMYKISFKINEAFIFYKG 60
           +VSA+AVGDL L+F +RY+ILK++LYVP MKRNLISI+CILEH+Y ISF++NE FI  KG
Sbjct: 338 VVSAEAVGDLTLFFQDRYLILKDVLYVPLMKRNLISIACILEHIYTISFEVNEVFILCKG 397

Query: 61  IQICSAIHENNLYELRPTRANFVLNTEMFRTAETQN---KVSSNAYLGHLRLCHINLNRI 120
           IQICSAI ENNLY+LRPTRAN VLNTEMFRT ETQN   KVSSNAYL HLRL HINLNRI
Sbjct: 398 IQICSAIRENNLYKLRPTRANVVLNTEMFRTLETQNKKQKVSSNAYLWHLRLGHINLNRI 457

Query: 121 GRLVKSGLPSKLEDNPLPPCESCLKGKMTKRSFTGKCLRAKIPLELVHSDLCGPMNVKAQ 180
            RLVKSG+ ++LEDN LPPCESCL+GKMTKRSFTGK LRAK+PLELVHSDLCGPMNVKA+
Sbjct: 458 ERLVKSGILNQLEDNSLPPCESCLEGKMTKRSFTGKGLRAKVPLELVHSDLCGPMNVKAR 517

Query: 181 GGYEYFISFVDDYSRYGHVYLIHHKSGYFEKFKGYKAEVENELGKTIKILRSDRGGEYLD 238
           GGYEYFISF+DD+SRYGHVYL+HHKS  FEKFK YKAEVENE+GKTIK LRSDRGGEY+D
Sbjct: 518 GGYEYFISFIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMD 577

[Close]

BLAST of Cmc01g0013231 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 4.3e-90
Identity = 166/243 (68.31%), Postives = 200/243 (82.30%), Query Frame = 0


Query: 1   MVSAKAVGDLKLYFGNRYIILKNILYVPQMKRNLISISCILEHMYKISFKINEAFIFYKG 60
           ++SA+AVGD KL+FGN+++ L+N+  VP++KRNL+S+SC++EHMY I+F +NEAFI+  G
Sbjct: 242 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFIYKNG 301

Query: 61  IQICSAIHENNLYELRPTRANFVLNTEMFRTAETQNK-----VSSNAYLGHLRLCHINLN 120
           + ICSA  ENNLY LRP  A  VLN EMFRTA TQNK      ++N YL HLRL HINL+
Sbjct: 302 VHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLGHINLD 361

Query: 121 RIGRLVKSGLPSKLEDNPLPPCESCLKGKMTKRSFTGKCLRAKIPLELVHSDLCGPMNVK 180
           RIGRLVK+GL +KL+D  LPPCESCL+GKMTKR FTGK  RAK PLEL+HSDLCGPMNVK
Sbjct: 362 RIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 421

Query: 181 AQGGYEYFISFVDDYSRYGHVYLIHHKSGYFEKFKGYKAEVENELGKTIKILRSDRGGEY 239
           A+GG+EYFISF+DDYSRYG++YL+ HKS   EKFK YK EVEN L K IKILRSDRGGEY
Sbjct: 422 ARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEY 481

[Close]

BLAST of Cmc01g0013231 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 8.2e-89
Identity = 164/243 (67.49%), Postives = 197/243 (81.07%), Query Frame = 0


Query: 1   MVSAKAVGDLKLYFGNRYIILKNILYVPQMKRNLISISCILEHMYKISFKINEAFIFYKG 60
           ++SA+AVGD KL+FGN+++ L+N+  VP++KRNL+S+SC++EHMY I+F +NEAFI+  G
Sbjct: 242 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFIYKNG 301

Query: 61  IQICSAIHENNLYELRPTRANFVLNTEMFRTAETQNK-----VSSNAYLGHLRLCHINLN 120
           + ICSA  ENNLY LRP  A  VLN EMFRTA TQNK      ++N YL HLRL HINL+
Sbjct: 302 VHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLGHINLD 361

Query: 121 RIGRLVKSGLPSKLEDNPLPPCESCLKGKMTKRSFTGKCLRAKIPLELVHSDLCGPMNVK 180
           RIGRLVK GL +KL+D  LPPCESCL+GKMTKR FTGK  RAK PLEL+HSDLCGPMNVK
Sbjct: 362 RIGRLVKDGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 421

Query: 181 AQGGYEYFISFVDDYSRYGHVYLIHHKSGYFEKFKGYKAEVENELGKTIKILRSDRGGEY 239
           A+G +EYFISF+DDYSRYG++YL+ HKS   EKFK YK EVEN L K IKI RSDRGGEY
Sbjct: 422 ARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKIFRSDRGGEY 481

[Close]

BLAST of Cmc01g0013231 vs. ExPASy TrEMBL
Match: A0A5D3BNE1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00410 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 4.0e-88
Identity = 164/243 (67.49%), Postives = 196/243 (80.66%), Query Frame = 0


Query: 1   MVSAKAVGDLKLYFGNRYIILKNILYVPQMKRNLISISCILEHMYKISFKINEAFIFYKG 60
           ++SA+AVGD KL+FGN+++ L+N+  VP++KRNL+S+SC++EHMY ISF +NEAFI   G
Sbjct: 214 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSISFSMNEAFISKNG 273

Query: 61  IQICSAIHENNLYELRPTRANFVLNTEMFRTAETQNK-----VSSNAYLGHLRLCHINLN 120
           + ICS   E+NLY L+P     VLN EMFRTA TQNK      ++N YL HLRL HINL+
Sbjct: 274 VHICSVKLEDNLYVLKPNEGKAVLNHEMFRTANTQNKRQRISSNNNTYLWHLRLGHINLD 333

Query: 121 RIGRLVKSGLPSKLEDNPLPPCESCLKGKMTKRSFTGKCLRAKIPLELVHSDLCGPMNVK 180
           RIGRLVK+GL +KLED+ LPPCESCL+GKMTKR FTGK  RAK PLEL+HSDLCGPMNVK
Sbjct: 334 RIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 393

Query: 181 AQGGYEYFISFVDDYSRYGHVYLIHHKSGYFEKFKGYKAEVENELGKTIKILRSDRGGEY 239
           A GG+EYFISF+DDYS YG++YLI HKS   EKFK YK EVEN L K IKILRSDRGGEY
Sbjct: 394 AIGGFEYFISFIDDYSMYGYLYLIEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEY 453

[Close]

BLAST of Cmc01g0013231 vs. ExPASy TrEMBL
Match: A0A5A7VJG3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001110 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.8e-83
Identity = 158/243 (65.02%), Postives = 195/243 (80.25%), Query Frame = 0


Query: 1   MVSAKAVGDLKLYFGNRYIILKNILYVPQMKRNLISISCILEHMYKISFKINEAFIFYKG 60
           ++SA+AVGD+KL+FG +++ L+N+  VP++KRNL+ +SC++EHMY I+F +NEAFI   G
Sbjct: 217 VISARAVGDVKLFFGIKFMFLENLYIVPKIKRNLVFVSCLIEHMYSINFSMNEAFISKNG 276

Query: 61  IQICSAIHENNLYELRPTRANFVLNTEMFRTAETQNK-----VSSNAYLGHLRLCHINLN 120
            ++     E+NLY LRP  A  VLN EMFRTA TQNK      ++N YL HLRL HINL+
Sbjct: 277 AKL-----EDNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLDHINLD 336

Query: 121 RIGRLVKSGLPSKLEDNPLPPCESCLKGKMTKRSFTGKCLRAKIPLELVHSDLCGPMNVK 180
           RIGRLVK+GL +KL+D+ LPPCESCL+GKMTKR FTGK  RAK PLEL+HSDLCGPMNVK
Sbjct: 337 RIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKDYRAKEPLELIHSDLCGPMNVK 396

Query: 181 AQGGYEYFISFVDDYSRYGHVYLIHHKSGYFEKFKGYKAEVENELGKTIKILRSDRGGEY 239
           A+GG+EYFISF+DDYSRYG++YL+ HK    EKFK YK EVEN L K IKILRSDRGGEY
Sbjct: 397 ARGGFEYFISFIDDYSRYGYLYLMEHKYEALEKFKEYKTEVENLLSKKIKILRSDRGGEY 454

The following BLAST results are available for this feature:

BLAST of Cmc01g0013231 vs. NCBI nr


Match Name	E-value	Identity	Description
ADJ18449.1	1.5e-105	80.83	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0025945.1	8.9e-90	68.31	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0035907.1	1.7e-88	67.49	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0060534.1	8.4e-88	67.49	gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis ...	[more]
KAA0067938.1	3.6e-83	65.02	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0013231 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.1e-25	33.94	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	2.4e-13	26.89	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	1.2e-12	28.70	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	3.5e-12	26.47	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q07791	1.2e-09	24.60	Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of Cmc01g0013231 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E2GK51	7.3e-106	80.83	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7TZD0	4.3e-90	68.31	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7T2V9	8.2e-89	67.49	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]
A0A5D3BNE1	4.0e-88	67.49	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G0041...	[more]
A0A5A7VJG3	1.8e-83	65.02	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G0011...	[more]

BLAST of Cmc01g0013231 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 96..145 e-value: 1.1E-8 score: 34.8
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 153..237 e-value: 3.0E-12 score: 48.2
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 156..238 score: 10.414178
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 154..236

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0013231.1	Cmc01g0013231.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding