Cmc01g0012621 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0012621
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Disease resistance protein CC-NBS-LRR class family
Location	CMiso1.1chr01: 8916595 .. 8918076 (+)
RNA-Seq Expression	Cmc01g0012621
Synteny	Cmc01g0012621

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTACTGTTTGGCATGATCGATTGGGTCATCCCGGGTCAATAATGATGAGAAGAATTATTGAAAATTCTCACGGACATCCACTAAATAACCAAAAGATTCTTCAATCCAATGAATTATCATGTATTGCTTGCTCTCAAAGAAAATTAATTATTAGGCCATCACCAGCCAAAGTGGGAGTTGAGTTACCTACATTTTTAAAAGGAATTCATGGTGACATATATGGACCCATCAATCCACCAAGTGGACCATTTAGATACTTCATGGTTTTAATTGACGCATCAAGTAGATGGTCACATGTGTGTTTACTATCAAGTCGAAACCTTGCATTTGCAAGATTACTTGCTCAAATAATCAAATTAAGAGCACAGTTTTCTGATTATACAATAAAAAACATTCGACTTGATAATACTTGTGAATTTACATCTCAAGCATTTAATAATTATTGCATGTCAACTGGGATAAATATTGAACATCCTGTAGCTCATATTCATACACAAAATGGTTTGGCAAAATCATTTATCAAGCATTTACAATTGATTGCTAGACCATTACTTATGAGAGCAAAACTTCCATTATCTATATGGGGTCATGCTAGTTTGCATCCAGTGTCACTTATATGCATAAGACCGACATCTTATCATAAGTATTCCCTAACACAATTAACTTATGGCCAGAAACCAAATATTTCTCATTTGCGAATTTTTGGTTGTGCAGTATATGTTCCAATTTCCCCACCACAACGTACTAAAATGGGACCTCAAAGAAGGTTAGGAATATATGTCGGATTTGAATTTCCATCAATTATTAGATATCTTGAACCCTTGATGGGGGATGTATTTACTGCACGATTCGCTGATTGTCATTTTAATGAGACAAATTTTCCAACATTATGGGAAAGAATTAAGAAGTTGGAAAATGAAATTGTCTGGAATGTATCGTTATTGTCTCATTTAGATCCTCGTACAAAGCAATGTGAACTAGAAGTTCAAAAAATAATTCATTTACAAAGTGTAGCAAACCAAATGCCAGATGCATTTACAGATACTAAGAAAGTGACCAAGTCATATATTCCAGCTGCAAATACTCCATCTAGAATTGAAATCCCAACTCAGCAAGTTGATACAATTAATGAATCAGAGCTGCGCCAAAAGCGTGGTAGACTAATGGGTTCAAAGGATAAAAATCCTCGAAAAAGAAAAGTAACCAATAGTCGGAATGACTTAATTGACAATAGAAACATTCAAGAAAAAGTCATGGACATGACTAGTGGTAAAAATGTTGAAAAGACTCTAGTATATAAAGATAACAATGATATCTCGATAAATTATACAATGACAGAAAAAATGTGGAATAGAATTAATGTAGTTGTAGACAACATTTTTGCGTATAATGTTGCACATAATATCATTCATGAAAATGAGGATTATGAACCTAAATCTGTTGACGAATGGCATAATAGAAAAGATTGGCCCAAGTGA

mRNA sequence

ATGTTTACTGTTTGGCATGATCGATTGGGTCATCCCGGGTCAATAATGATGAGAAGAATTATTGAAAATTCTCACGGACATCCACTAAATAACCAAAAGATTCTTCAATCCAATGAATTATCATGTATTGCTTGCTCTCAAAGAAAATTAATTATTAGGCCATCACCAGCCAAAGTGGGAGTTGAGTTACCTACATTTTTAAAAGGAATTCATGGTGACATATATGGACCCATCAATCCACCAAGTGGACCATTTAGATACTTCATGGTTTTAATTGACGCATCAAGTAGATGGTCACATGTGTGTTTACTATCAAGTCGAAACCTTGCATTTGCAAGATTACTTGCTCAAATAATCAAATTAAGAGCACAGTTTTCTGATTATACAATAAAAAACATTCGACTTGATAATACTTGTGAATTTACATCTCAAGCATTTAATAATTATTGCATGTCAACTGGGATAAATATTGAACATCCTGTAGCTCATATTCATACACAAAATGGTTTGGCAAAATCATTTATCAAGCATTTACAATTGATTGCTAGACCATTACTTATGAGAGCAAAACTTCCATTATCTATATGGGGTCATGCTAGTTTGCATCCAGTGTCACTTATATGCATAAGACCGACATCTTATCATAAGTATTCCCTAACACAATTAACTTATGGCCAGAAACCAAATATTTCTCATTTGCGAATTTTTGGTTGTGCAGTATATGTTCCAATTTCCCCACCACAACGTACTAAAATGGGACCTCAAAGAAGGTTAGGAATATATGTCGGATTTGAATTTCCATCAATTATTAGATATCTTGAACCCTTGATGGGGGATGTATTTACTGCACGATTCGCTGATTGTCATTTTAATGAGACAAATTTTCCAACATTATGGGAAAGAATTAAGAAGTTGGAAAATGAAATTGTCTGGAATGTATCGTTATTGTCTCATTTAGATCCTCGTACAAAGCAATGTGAACTAGAAGTTCAAAAAATAATTCATTTACAAAGTGTAGCAAACCAAATGCCAGATGCATTTACAGATACTAAGAAAGTGACCAAGTCATATATTCCAGCTGCAAATACTCCATCTAGAATTGAAATCCCAACTCAGCAAGTTGATACAATTAATGAATCAGAGCTGCGCCAAAAGCGTGGTAGACTAATGGGTTCAAAGGATAAAAATCCTCGAAAAAGAAAAGTAACCAATAGTCGGAATGACTTAATTGACAATAGAAACATTCAAGAAAAAGTCATGGACATGACTAGTGGTAAAAATGTTGAAAAGACTCTAGTATATAAAGATAACAATGATATCTCGATAAATTATACAATGACAGAAAAAATGTGGAATAGAATTAATGTAGTTGTAGACAACATTTTTGCGTATAATGTTGCACATAATATCATTCATGAAAATGAGGATTATGAACCTAAATCTGTTGACGAATGGCATAATAGAAAAGATTGGCCCAAGTGA

Coding sequence (CDS)

ATGTTTACTGTTTGGCATGATCGATTGGGTCATCCCGGGTCAATAATGATGAGAAGAATTATTGAAAATTCTCACGGACATCCACTAAATAACCAAAAGATTCTTCAATCCAATGAATTATCATGTATTGCTTGCTCTCAAAGAAAATTAATTATTAGGCCATCACCAGCCAAAGTGGGAGTTGAGTTACCTACATTTTTAAAAGGAATTCATGGTGACATATATGGACCCATCAATCCACCAAGTGGACCATTTAGATACTTCATGGTTTTAATTGACGCATCAAGTAGATGGTCACATGTGTGTTTACTATCAAGTCGAAACCTTGCATTTGCAAGATTACTTGCTCAAATAATCAAATTAAGAGCACAGTTTTCTGATTATACAATAAAAAACATTCGACTTGATAATACTTGTGAATTTACATCTCAAGCATTTAATAATTATTGCATGTCAACTGGGATAAATATTGAACATCCTGTAGCTCATATTCATACACAAAATGGTTTGGCAAAATCATTTATCAAGCATTTACAATTGATTGCTAGACCATTACTTATGAGAGCAAAACTTCCATTATCTATATGGGGTCATGCTAGTTTGCATCCAGTGTCACTTATATGCATAAGACCGACATCTTATCATAAGTATTCCCTAACACAATTAACTTATGGCCAGAAACCAAATATTTCTCATTTGCGAATTTTTGGTTGTGCAGTATATGTTCCAATTTCCCCACCACAACGTACTAAAATGGGACCTCAAAGAAGGTTAGGAATATATGTCGGATTTGAATTTCCATCAATTATTAGATATCTTGAACCCTTGATGGGGGATGTATTTACTGCACGATTCGCTGATTGTCATTTTAATGAGACAAATTTTCCAACATTATGGGAAAGAATTAAGAAGTTGGAAAATGAAATTGTCTGGAATGTATCGTTATTGTCTCATTTAGATCCTCGTACAAAGCAATGTGAACTAGAAGTTCAAAAAATAATTCATTTACAAAGTGTAGCAAACCAAATGCCAGATGCATTTACAGATACTAAGAAAGTGACCAAGTCATATATTCCAGCTGCAAATACTCCATCTAGAATTGAAATCCCAACTCAGCAAGTTGATACAATTAATGAATCAGAGCTGCGCCAAAAGCGTGGTAGACTAATGGGTTCAAAGGATAAAAATCCTCGAAAAAGAAAAGTAACCAATAGTCGGAATGACTTAATTGACAATAGAAACATTCAAGAAAAAGTCATGGACATGACTAGTGGTAAAAATGTTGAAAAGACTCTAGTATATAAAGATAACAATGATATCTCGATAAATTATACAATGACAGAAAAAATGTGGAATAGAATTAATGTAGTTGTAGACAACATTTTTGCGTATAATGTTGCACATAATATCATTCATGAAAATGAGGATTATGAACCTAAATCTGTTGACGAATGGCATAATAGAAAAGATTGGCCCAAGTGA

Protein sequence

MFTVWHDRLGHPGSIMMRRIIENSHGHPLNNQKILQSNELSCIACSQRKLIIRPSPAKVGVELPTFLKGIHGDIYGPINPPSGPFRYFMVLIDASSRWSHVCLLSSRNLAFARLLAQIIKLRAQFSDYTIKNIRLDNTCEFTSQAFNNYCMSTGINIEHPVAHIHTQNGLAKSFIKHLQLIARPLLMRAKLPLSIWGHASLHPVSLICIRPTSYHKYSLTQLTYGQKPNISHLRIFGCAVYVPISPPQRTKMGPQRRLGIYVGFEFPSIIRYLEPLMGDVFTARFADCHFNETNFPTLWERIKKLENEIVWNVSLLSHLDPRTKQCELEVQKIIHLQSVANQMPDAFTDTKKVTKSYIPAANTPSRIEIPTQQVDTINESELRQKRGRLMGSKDKNPRKRKVTNSRNDLIDNRNIQEKVMDMTSGKNVEKTLVYKDNNDISINYTMTEKMWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDEWHNRKDWPK

Homology

[Close]

BLAST of Cmc01g0012621 vs. NCBI nr
Match: AQY61300.1 (Pol [Coffea eugenioides])

HSP 1 Score: 659.8 bits (1701), Expect = 1.8e-185
Identity = 319/492 (64.84%), Postives = 391/492 (79.47%), Query Frame = 0


Query: 2   FTVWHDRLGHPGSIMMRRIIENSHGHPLNNQKILQSNELSCIACSQRKLIIRPSPAKVGV 61
           F +WHDRLGHPGSIMMRRIIENSHGH L N+K+L++NE SC+ACSQ KLIIRPS  KVG 
Sbjct: 155 FIIWHDRLGHPGSIMMRRIIENSHGHSLKNKKVLKANEFSCVACSQGKLIIRPSQVKVGT 214

Query: 62  ELPTFLKGIHGDIYGPINPPSGPFRYFMVLIDASSRWSHVCLLSSRNLAFARLLAQIIKL 121
           E P FL+ IHGDI GP++PP GPFRYFMVLIDAS+RWSHVCLLS+RNLAFARLL QIIKL
Sbjct: 215 ESPAFLEQIHGDICGPVDPPCGPFRYFMVLIDASTRWSHVCLLSTRNLAFARLLTQIIKL 274

Query: 122 RAQFSDYTIKNIRLDNTCEFTSQAFNNYCMSTGINIEHPVAHIHTQNGLAKSFIKHLQLI 181
           RAQFSD+ IK IRLDN  E++S AF++YCMS GI +EHPVA++HTQNGLA+S IK LQLI
Sbjct: 275 RAQFSDFPIKKIRLDNAGEYSSHAFDDYCMSIGITVEHPVAYVHTQNGLAESLIKRLQLI 334

Query: 182 ARPLLMRAKLPLSIWGHASLHPVSLICIRPTSYHKYSLTQLTYGQKPNISHLRIFGCAVY 241
           ARPLLMR+KLP S WGHA LH  +L+ IRPT+YH YS  QLT+G +PNISHLRIFGCAVY
Sbjct: 335 ARPLLMRSKLPSSAWGHAILHAATLVRIRPTNYHTYSPLQLTFGYEPNISHLRIFGCAVY 394

Query: 242 VPISPPQRTKMGPQRRLGIYVGFEFPSIIRYLEPLMGDVFTARFADCHFNETNFPTLWER 301
           VPI+PPQR K+ PQRRLGIYVG+E PSII+Y+EPL GD+FTARFADCHF+E++FPTL   
Sbjct: 395 VPIAPPQRRKLSPQRRLGIYVGYESPSIIKYMEPLTGDLFTARFADCHFDESHFPTLGGD 454

Query: 302 IKKLENEIVWNVSLLSHLDPRTKQCELEVQKIIHLQSVANQMPDAFTDTKKVTKSYIPAA 361
             + + EI W +S L+ LD RTK+CELEVQ+IIHLQ +ANQ+PDAF D+K+VTKS+IPA 
Sbjct: 455 KNQPKKEITWKIS-LNFLDSRTKECELEVQRIIHLQKIANQLPDAFNDSKRVTKSHIPAE 514

Query: 362 NTPSRIEIPTQQVDTINESELRQKRGRLMGSKDKNPRKRKVTNSRNDLIDNRNIQEKVMD 421
           N P +I++P  Q+ + NES+ R KRGR +GSKDKNPRK++        +D   I +K+  
Sbjct: 515 NAPIKIDVPEGQITSANESKARLKRGRPLGSKDKNPRKKRG-------VDESTISDKIQP 574

Query: 422 MTSGKNVEKTLVYKDNNDISINYTMTEKMWNRINVVVDNIFAYNVAHNIIHENEDYEPKS 481
                  E  L   +  + SIN+  ++K WNR  +++DNIFAYN+A +I+ E+ED+EP+S
Sbjct: 575 PEEVAPKEPILEENEIMENSINFVTSKKSWNRKEIIIDNIFAYNIALDIMAEDEDHEPRS 634

Query: 482 VDEWHNRKDWPK 494
           VDE   R DWPK
Sbjct: 635 VDECRGRNDWPK 638

[Close]

BLAST of Cmc01g0012621 vs. NCBI nr
Match: AQY61299.1 (Pol [Coffea canephora])

HSP 1 Score: 657.5 bits (1695), Expect = 8.9e-185
Identity = 320/492 (65.04%), Postives = 390/492 (79.27%), Query Frame = 0


Query: 2   FTVWHDRLGHPGSIMMRRIIENSHGHPLNNQKILQSNELSCIACSQRKLIIRPSPAKVGV 61
           F +WHDRLGHPGSIMMRRIIENSHGH L N+K+L++NE SC+ACSQ KLIIRPS  KVG 
Sbjct: 155 FIIWHDRLGHPGSIMMRRIIENSHGHSLKNKKVLKANEFSCVACSQGKLIIRPSQVKVGT 214

Query: 62  ELPTFLKGIHGDIYGPINPPSGPFRYFMVLIDASSRWSHVCLLSSRNLAFARLLAQIIKL 121
           E P FL+ IHGDI GP++PP GPFRYFMVLIDAS+RWSHVCLLS+RNLAFARLLAQIIKL
Sbjct: 215 ESPAFLERIHGDICGPVDPPCGPFRYFMVLIDASTRWSHVCLLSTRNLAFARLLAQIIKL 274

Query: 122 RAQFSDYTIKNIRLDNTCEFTSQAFNNYCMSTGINIEHPVAHIHTQNGLAKSFIKHLQLI 181
           RAQF D+ IK IRLDN  E++S AF++YCMS GI +EHPVA++HTQNGLA+S IK LQLI
Sbjct: 275 RAQFPDFPIKKIRLDNAGEYSSHAFDDYCMSIGITVEHPVAYVHTQNGLAESLIKRLQLI 334

Query: 182 ARPLLMRAKLPLSIWGHASLHPVSLICIRPTSYHKYSLTQLTYGQKPNISHLRIFGCAVY 241
           ARPLLMR+KLP S WGHA LH  +L+ IRPTSYH YS  QLT+G +PNISHLRIFGCAVY
Sbjct: 335 ARPLLMRSKLPSSAWGHAILHAATLVRIRPTSYHTYSPLQLTFGYEPNISHLRIFGCAVY 394

Query: 242 VPISPPQRTKMGPQRRLGIYVGFEFPSIIRYLEPLMGDVFTARFADCHFNETNFPTLWER 301
           VPI+P QR K+G QRRLGIYVG+E PSII+Y+EPL GD+FTARFADCHF+E++FPTL   
Sbjct: 395 VPIAPLQRRKLGLQRRLGIYVGYESPSIIKYMEPLTGDLFTARFADCHFDESHFPTLGGD 454

Query: 302 IKKLENEIVWNVSLLSHLDPRTKQCELEVQKIIHLQSVANQMPDAFTDTKKVTKSYIPAA 361
             + + EI W +S L+ LD RTK+CELEVQ+IIHLQ +ANQ+PDAF D+K+VTKS+IPA 
Sbjct: 455 KNQPKKEITWKIS-LNFLDSRTKECELEVQRIIHLQKIANQLPDAFNDSKRVTKSHIPAE 514

Query: 362 NTPSRIEIPTQQVDTINESELRQKRGRLMGSKDKNPRKRKVTNSRNDLIDNRNIQEKVMD 421
           N P +I++P +Q+ + NES+ R KRGR +GSKDKNPRK++        ID   I +K+  
Sbjct: 515 NAPIKIDVPEEQITSANESKARLKRGRPLGSKDKNPRKKRG-------IDESTISDKIQP 574

Query: 422 MTSGKNVEKTLVYKDNNDISINYTMTEKMWNRINVVVDNIFAYNVAHNIIHENEDYEPKS 481
                  E  L   +  + SIN+  + K WNR  +++DNIFAYN+A +I+ E+ED+EP+S
Sbjct: 575 PEEVAPKEPILEENETIENSINFVTSRKSWNRKEIIIDNIFAYNIALDIMAEDEDHEPRS 634

Query: 482 VDEWHNRKDWPK 494
           VDE   R DWPK
Sbjct: 635 VDECRGRNDWPK 638

[Close]

BLAST of Cmc01g0012621 vs. NCBI nr
Match: RVW51062.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 648.7 bits (1672), Expect = 4.1e-182
Identity = 329/530 (62.08%), Postives = 395/530 (74.53%), Query Frame = 0


Query: 1   MFTVWHDRLGHPGSIMMRRIIENSHGHPLNNQKILQSNELSCIACSQRKLIIRPSPAKVG 60
           +F +WHDRLGHPGS MMRRIIE+SHGHPL NQKIL  NE SC ACSQ KLIIRPS  KV 
Sbjct: 34  VFVLWHDRLGHPGSSMMRRIIEHSHGHPLKNQKILSPNEYSCAACSQGKLIIRPSFTKVI 93

Query: 61  VELPTFLKGIHGDIYGPINPPSGPFRYFMVLIDASSRWSHVCLLSSRNLAFARLLAQIIK 120
            E P FL+ IHGDI GPI+PP GPFRYFM+LIDAS+RWSHVCLLS+RN+AFARLLAQII+
Sbjct: 94  SESPIFLERIHGDICGPIHPPCGPFRYFMILIDASTRWSHVCLLSTRNVAFARLLAQIIR 153

Query: 121 LRAQFSDYTIKNIRLDNTCEFTSQAFNNYCMSTGINIEHPVAHIHTQNGLAKSFIKHLQL 180
           LRAQF DY IK IRLDN  EFTSQ F NYCMS GINIEHPVAH HTQNGLA+SFIK LQL
Sbjct: 154 LRAQFPDYPIKTIRLDNAGEFTSQTFINYCMSVGINIEHPVAHTHTQNGLAESFIKRLQL 213

Query: 181 IARPLLMRAKLPLSIWGHASLHPVSLICIRPTSYHKYSLTQLTYGQKPNISHLRIFGCAV 240
           IARPLLM+ KLP S WGHA +H  +L+ IRPT+YH+YS +QL  G++PNISHLRIFGCAV
Sbjct: 214 IARPLLMKTKLPTSAWGHAIMHDAALVRIRPTTYHEYSPSQLVLGKQPNISHLRIFGCAV 273

Query: 241 YVPISPPQRTKMGPQRRLGIYVGFEFPSIIRYLEPLMGDVFTARFADCHFNETNFPTLW- 300
           YVPI+P QRTKMGPQRRLG+YVGF+ PSII+YLEPL GDVFTARFADCHFNE+ FP+L  
Sbjct: 274 YVPIAPTQRTKMGPQRRLGVYVGFDSPSIIKYLEPLTGDVFTARFADCHFNESVFPSLGR 333

Query: 301 -ERIKKLENEIVWNVSLLSHLDPRTKQCELEVQKIIHLQSVANQMPDAFTDTKKVTKSYI 360
            + I +   EI W  S ++HLDPRT QCELEVQ+IIHLQ++ANQ+PDAF DTKKVTKS+I
Sbjct: 334 EKSIPEERREISWKTSTMTHLDPRTNQCELEVQRIIHLQNLANQLPDAFIDTKKVTKSHI 393

Query: 361 PAANTPSRIEIPTQQVDTINESELRQKRGRLMGSKDKNPRKRKVTNSRNDLIDNRNIQEK 420
           PAANTP+RI++P  Q+   NES++R KRGR +GSKD  PRKR+       L       E+
Sbjct: 394 PAANTPARIDVPVGQL--TNESKIRLKRGRPVGSKDVTPRKRRTQEKLGTL-------EE 453

Query: 421 VMDMTSGKNVEKTLVYK-----------------------------------DNNDISIN 480
            + MT    ++K++  +                                   +N +IS++
Sbjct: 454 TIKMTDQFKIDKSIALEEAQIMQKAPEEVHIEQETPEDPHIEREAPEEAQVPENCEISVS 513

Query: 481 YTMTEKMWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDEWHNRKDWPK 494
           Y  T + W+R N+V++NIFA+ VA +II  +ED EP++V+E  +R DWPK
Sbjct: 514 YVQTGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPK 554

[Close]

BLAST of Cmc01g0012621 vs. NCBI nr
Match: AQY61295.1 (Pol [Coffea arabica])

HSP 1 Score: 646.7 bits (1667), Expect = 1.6e-181
Identity = 316/492 (64.23%), Postives = 386/492 (78.46%), Query Frame = 0


Query: 2   FTVWHDRLGHPGSIMMRRIIENSHGHPLNNQKILQSNELSCIACSQRKLIIRPSPAKVGV 61
           F +WHDRLGH GSIMMRRIIENSHGH L N+K+L++NE SC+ACSQ KLIIRPS  KVG 
Sbjct: 155 FIIWHDRLGHLGSIMMRRIIENSHGHSLKNKKVLKANEFSCVACSQGKLIIRPSQVKVGT 214

Query: 62  ELPTFLKGIHGDIYGPINPPSGPFRYFMVLIDASSRWSHVCLLSSRNLAFARLLAQIIKL 121
           E P FL+ IHGDI GP++PP GPFRYFMVLIDAS+RWSHVCLLS+RNLAFARLL QIIKL
Sbjct: 215 ESPAFLERIHGDICGPVDPPCGPFRYFMVLIDASTRWSHVCLLSTRNLAFARLLGQIIKL 274

Query: 122 RAQFSDYTIKNIRLDNTCEFTSQAFNNYCMSTGINIEHPVAHIHTQNGLAKSFIKHLQLI 181
           RAQF D+ IK IRLDN  E++S AF++YCMS GI +EHPVA++HTQNGLA+S IK LQLI
Sbjct: 275 RAQFPDFPIKKIRLDNAGEYSSHAFDDYCMSIGITVEHPVAYVHTQNGLAESLIKRLQLI 334

Query: 182 ARPLLMRAKLPLSIWGHASLHPVSLICIRPTSYHKYSLTQLTYGQKPNISHLRIFGCAVY 241
           ARPLLMR+KLP S WGHA LH  +L+ I PTSYH YS  QLT+G +PNISHLRIFGCAVY
Sbjct: 335 ARPLLMRSKLPSSAWGHAILHAATLVRISPTSYHTYSPLQLTFGYEPNISHLRIFGCAVY 394

Query: 242 VPISPPQRTKMGPQRRLGIYVGFEFPSIIRYLEPLMGDVFTARFADCHFNETNFPTLWER 301
           VPI+PPQR K+G QRRLGIYVG+E PSII+Y+EPL GD+FTARFADCHF+E++F TL   
Sbjct: 395 VPIAPPQRRKLGLQRRLGIYVGYESPSIIKYMEPLTGDLFTARFADCHFDESHFSTLGGD 454

Query: 302 IKKLENEIVWNVSLLSHLDPRTKQCELEVQKIIHLQSVANQMPDAFTDTKKVTKSYIPAA 361
             + + EI W +S L+ LD RTK+CELEVQ+IIHLQ +ANQ+PDAF D+K+VTKS+IPA 
Sbjct: 455 KNQPKKEITWKIS-LNFLDSRTKECELEVQRIIHLQKIANQLPDAFNDSKRVTKSHIPAE 514

Query: 362 NTPSRIEIPTQQVDTINESELRQKRGRLMGSKDKNPRKRKVTNSRNDLIDNRNIQEKVMD 421
           N P +I++P +Q+ + NES+ R KRGR +GSKDKNPRK++        ID   I +K+  
Sbjct: 515 NAPIKIDVPEEQITSANESKARLKRGRPLGSKDKNPRKKRE-------IDESTISDKIQP 574

Query: 422 MTSGKNVEKTLVYKDNNDISINYTMTEKMWNRINVVVDNIFAYNVAHNIIHENEDYEPKS 481
                  E  L   +  + SIN+  + K WNR  +++DNIFAYN+A +I+ E+ED+E +S
Sbjct: 575 PEEVAPKEPILEENETIENSINFITSRKSWNRKEIIIDNIFAYNIALDIMAEDEDHELRS 634

Query: 482 VDEWHNRKDWPK 494
           VDE   R DWPK
Sbjct: 635 VDECRGRNDWPK 638

[Close]

BLAST of Cmc01g0012621 vs. NCBI nr
Match: RVX16158.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 644.4 bits (1661), Expect = 7.8e-181
Identity = 329/540 (60.93%), Postives = 396/540 (73.33%), Query Frame = 0


Query: 1   MFTVWHDRLGHPGSIMMRRIIENSHGHPLNNQKILQSNELSCIACSQRKLIIRPSPAKVG 60
           +F +WHDRLGHPGS MMRRIIE+SHGHPL NQKIL  NE SC ACSQ KLIIRPS  KV 
Sbjct: 34  VFVLWHDRLGHPGSSMMRRIIEHSHGHPLKNQKILSPNEYSCAACSQGKLIIRPSFTKVI 93

Query: 61  VELPTFLKGIHGDIYGPINPPSGPFRYFMVLIDASSRWSHVCLLSSRNLAFARLLAQIIK 120
            E P FL+ IHGDI GPI+PP GPFRYFM+LIDAS+RWSHVCLLS+RN+AFARLLAQII+
Sbjct: 94  SESPIFLERIHGDICGPIHPPCGPFRYFMILIDASTRWSHVCLLSTRNVAFARLLAQIIR 153

Query: 121 LRAQFSDYTIKNIRLDNTCEFTSQAFNNYCMSTGINIEHPVAHIHTQNGLAKSFIKHLQL 180
           LRAQF DY IK IRLDN  EFTSQ F +YCMS GINIEHPVAH HTQNGLA+SFIK LQL
Sbjct: 154 LRAQFPDYPIKTIRLDNAGEFTSQTFIDYCMSVGINIEHPVAHTHTQNGLAESFIKRLQL 213

Query: 181 IARPLLMRAKLPLSIWGHASLHPVSLICIRPTSYHKYSLTQLTYGQKPNISHLRIFGCAV 240
           IARPLLM+ KLP S WGHA +H  +L+ IRPT+YH+YS +QL  G++PNISHLRIFGCAV
Sbjct: 214 IARPLLMKTKLPTSAWGHAIMHAAALVRIRPTTYHEYSPSQLVLGKQPNISHLRIFGCAV 273

Query: 241 YVPISPPQRTKMGPQRRLGIYVGFEFPSIIRYLEPLMGDVFTARFADCHFNETNFPTLW- 300
           YVPI+P QRTKMGPQRRLG+YVGF+ PSIIRYLEPL GDVFTARFADCHFNE+ FP+L  
Sbjct: 274 YVPIAPTQRTKMGPQRRLGVYVGFDSPSIIRYLEPLTGDVFTARFADCHFNESVFPSLGR 333

Query: 301 -ERIKKLENEIVWNVSLLSHLDPRTKQCELEVQKIIHLQSVANQMPDAFTDTKKVTKSYI 360
            + I +   EI W  S ++HLDPRT QCELEVQ+IIHLQ++ANQ+PDAF DTKKVTKS+I
Sbjct: 334 EKSIPEERREISWKTSTMTHLDPRTNQCELEVQRIIHLQNLANQLPDAFIDTKKVTKSHI 393

Query: 361 PAANTPSRIEIPTQQVDTINESELRQKRGRLMGSKDKNPRKRKVTNSRNDLIDNRNIQEK 420
           PAANTP+RI++P  Q+   NES++R KRGR +GSKD  PRKR+     + L       E+
Sbjct: 394 PAANTPARIDVPVGQL--TNESKIRLKRGRPVGSKDVTPRKRRTQEKLSTL-------EE 453

Query: 421 VMDMTSGKNVEKTLVYK------------------------------------------- 480
            + MT    ++K++  +                                           
Sbjct: 454 AIKMTDQFKIDKSIALEEAQIMQKAPEEVHIEQEVPEEAHIEQETSEDPHIEREAPEEAQ 513

Query: 481 --DNNDISINYTMTEKMWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDEWHNRKDWPK 494
             +N +IS++Y  T + W+R N+V++NIFA+ VA +II  +ED EP++V+E  +R DWPK
Sbjct: 514 VPENCEISVSYVQTGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPK 564

[Close]

BLAST of Cmc01g0012621 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.9e-21
Identity = 86/320 (26.88%), Postives = 146/320 (45.62%), Query Frame = 0


Query: 4   VWHDRLGHPGS-----IMMRRIIENSHG---HPLNNQKILQSNELSCIACSQRKLIIRPS 63
           +WH R+GH        +  + +I  + G    P +     + + +S    S+RKL I   
Sbjct: 424 LWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNI--- 483

Query: 64  PAKVGVELPTFLKGIHGDIYGPINPPS-GPFRYFMVLIDASSRWSHVCLLSSRNLAFARL 123
                      L  ++ D+ GP+   S G  +YF+  ID +SR   V +L +++  F ++
Sbjct: 484 -----------LDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVF-QV 543

Query: 124 LAQIIKLRAQFSDYTIKNIRLDNTCEFTSQAFNNYCMSTGINIEHPVAHIHTQNGLAKSF 183
             +   L  + +   +K +R DN  E+TS+ F  YC S GI  E  V      NG+A+  
Sbjct: 544 FQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERM 603

Query: 184 IKHLQLIARPLLMRAKLPLSIWGHASLHPVSLICIRPTSYHKYSLTQLTYGQKP-NISHL 243
            + +    R +L  AKLP S WG A      LI   P+    + + +  +  K  + SHL
Sbjct: 604 NRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHL 663

Query: 244 RIFGCAVYVPISPPQRTKMGPQRRLGIYVGFEFPSI-IRYLEPLMGDVFTARFADCHFNE 303
           ++FGC  +  +   QRTK+  +    I++G+       R  +P+   V  +R  D  F E
Sbjct: 664 KVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSR--DVVFRE 723

Query: 304 TNFPTLWERIKKLENEIVWN 313
           +   T  +  +K++N I+ N
Sbjct: 724 SEVRTAADMSEKVKNGIIPN 726

[Close]

BLAST of Cmc01g0012621 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 102.1 bits (253), Expect = 1.9e-20
Identity = 129/521 (24.76%), Postives = 228/521 (43.76%), Query Frame = 0


Query: 2   FTVWHDRLGHPGSIMMRRIIENSHGHPLNNQKILQSNELSCIAC------SQRKLIIRPS 61
           F +WH+R GH   I   +++E    +  ++Q +L + ELSC  C       Q +L  +  
Sbjct: 415 FRLWHERFGH---ISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQL 474

Query: 62  PAKVGVELPTFLKGIHGDIYGPINPPS-GPFRYFMVLIDASSRWSHVCLLSSRNLAFARL 121
             K  ++ P F+  +H D+ GPI P +     YF++ +D  + +    L+  ++  F+  
Sbjct: 475 KDKTHIKRPLFV--VHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMF 534

Query: 122 LAQIIKLRAQFSDYTIKNIRLDNTCEFTSQAFNNYCMSTGINIEHPVAHIHTQNGLAKSF 181
              + K  A F +  +  + +DN  E+ S     +C+  GI+    V H    NG+++  
Sbjct: 535 QDFVAKSEAHF-NLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERM 594

Query: 182 IKHLQLIARPLLMRAKLPLSIWGHASLHPVSLICIRPTSY---HKYSLTQLTYGQKPNIS 241
           I+ +   AR ++  AKL  S WG A L    LI   P+        +  ++ + +KP + 
Sbjct: 595 IRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLK 654

Query: 242 HLRIFGCAVYVPISPPQRTKMGPQRRLGIYVGFEFPSIIRYLEPLMGDVFTARFADCHFN 301
           HLR+FG  VYV I   Q  K   +    I+VG+E P+  +  + +      AR  D   +
Sbjct: 655 HLRVFGATVYVHIKNKQ-GKFDDKSFKSIFVGYE-PNGFKLWDAVNEKFIVAR--DVVVD 714

Query: 302 ETN--------FPTLW-ERIKKLENEIVWNVS---LLSHLDPRTKQCELEVQKIIHLQSV 361
           ETN        F T++ +  K+ EN+   N S   + +     +K+C+  +Q +    S 
Sbjct: 715 ETNMVNSRAVKFETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECD-NIQFL--KDSK 774

Query: 362 ANQMPDAFTDTKKVTKSYIP-AANTPSRIEIPTQQVDT----INESELRQKRGRLMGSKD 421
            ++  +   D++K+ ++  P  +     I+      ++    +NES+ R++   L  SK 
Sbjct: 775 ESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESNKYFLNESKKRKRDDHLNESKG 834

Query: 422 K-NPRKRKVTNSRNDL----IDNRNIQEKVMDMTSGKNVEKTLVYKDNNDISINYTMTEK 481
             NP + + + +   L    IDN    + +  +       KT          I+Y   + 
Sbjct: 835 SGNPNESRESETAEHLKEIGIDNPTKNDGIEIINRRSERLKT-------KPQISYNEED- 894

Query: 482 MWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDEWHNRKD 491
             N +N VV N      AH I ++     P S DE   R D
Sbjct: 895 --NSLNKVVLN------AHTIFND----VPNSFDEIQYRDD 902

[Close]

BLAST of Cmc01g0012621 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.1e-15
Identity = 80/301 (26.58%), Postives = 129/301 (42.86%), Query Frame = 0


Query: 5   WHDRLGHPGSIMMRRIIENSHGHPLNNQKILQSNELSCIACSQRKLIIRP-SPAKVGVEL 64
           WH RLGHP   ++  +I N H  P+ N        LSC  C   K    P S + +    
Sbjct: 446 WHSRLGHPSLAILNSVISN-HSLPVLNP---SHKLLSCSDCFINKSHKVPFSNSTITSSK 505

Query: 65  PTFLKGIHGDIYGPINPPSGPFRYFMVLIDASSRWSHVCLLSSRN------LAFARLLAQ 124
           P  L+ I+ D++         +RY+++ +D  +R++ +  L  ++      + F  L+  
Sbjct: 506 P--LEYIYSDVWSSPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVEN 565

Query: 125 IIKLRAQFSDYTIKNIRLDNTCEFTSQAFNNYCMSTGINIEHPVAHIHTQNGLAKSFIKH 184
             + R       I  +  DN  EF      +Y    GI+      H    NGL++   +H
Sbjct: 566 RFQTR-------IGTLYSDNGGEFV--VLRDYLSQHGISHFTSPPHTPEHNGLSERKHRH 625

Query: 185 LQLIARPLLMRAKLPLSIWGHASLHPVSLICIRPTS-YHKYSLTQLTYGQKPNISHLRIF 244
           +  +   LL  A +P + W +A    V LI   PT      S  Q  +GQ PN   L++F
Sbjct: 626 IVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVF 685

Query: 245 GCAVYVPISPPQRTKMGPQRRLGIYVGFEF-PSIIRYLEPLMGDVFTARFADCHFNETNF 297
           GCA Y  + P  R K+  + +   ++G+    S    L    G ++T+R     F+E  F
Sbjct: 686 GCACYPWLRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHV--QFDERCF 729

[Close]

BLAST of Cmc01g0012621 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-13
Identity = 72/268 (26.87%), Postives = 113/268 (42.16%), Query Frame = 0


Query: 5   WHDRLGHPGSIMMRRIIENSHGHPLNNQKILQSNELSCIACSQRKLIIRP-SPAKVGVEL 64
           WH RLGHP   ++  +I N     LN         LSC  C   K    P S + +    
Sbjct: 467 WHARLGHPAPSILNSVISNYSLSVLNP----SHKFLSCSDCLINKSNKVPFSQSTINSTR 526

Query: 65  PTFLKGIHGDIYGPINPPSGPFRYFMVLIDASSRWSHVCLLSSRN------LAFARLLAQ 124
           P  L+ I+ D++         +RY+++ +D  +R++ +  L  ++      + F  LL  
Sbjct: 527 P--LEYIYSDVWSSPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLEN 586

Query: 125 IIKLRAQFSDYTIKNIRLDNTCEFTSQAFNNYCMSTGINIEHPVAHIHTQNGLAKSFIKH 184
             + R       I     DN  EF   A   Y    GI+      H    NGL++   +H
Sbjct: 587 RFQTR-------IGTFYSDNGGEFV--ALWEYFSQHGISHLTSPPHTPEHNGLSERKHRH 646

Query: 185 LQLIARPLLMRAKLPLSIWGHASLHPVSLICIRPTSYHKY-SLTQLTYGQKPNISHLRIF 244
           +      LL  A +P + W +A    V LI   PT   +  S  Q  +G  PN   LR+F
Sbjct: 647 IVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVF 706

Query: 245 GCAVYVPISPPQRTKMGPQRRLGIYVGF 265
           GCA Y  + P  + K+  + R  +++G+
Sbjct: 707 GCACYPWLRPYNQHKLDDKSRQCVFLGY 719

[Close]

BLAST of Cmc01g0012621 vs. ExPASy TrEMBL
Match: A0A1U9WYB0 (Pol OS=Coffea eugenioides OX=49369 GN=Pol PE=4 SV=1)

HSP 1 Score: 659.8 bits (1701), Expect = 8.7e-186
Identity = 319/492 (64.84%), Postives = 391/492 (79.47%), Query Frame = 0


Query: 2   FTVWHDRLGHPGSIMMRRIIENSHGHPLNNQKILQSNELSCIACSQRKLIIRPSPAKVGV 61
           F +WHDRLGHPGSIMMRRIIENSHGH L N+K+L++NE SC+ACSQ KLIIRPS  KVG 
Sbjct: 155 FIIWHDRLGHPGSIMMRRIIENSHGHSLKNKKVLKANEFSCVACSQGKLIIRPSQVKVGT 214

Query: 62  ELPTFLKGIHGDIYGPINPPSGPFRYFMVLIDASSRWSHVCLLSSRNLAFARLLAQIIKL 121
           E P FL+ IHGDI GP++PP GPFRYFMVLIDAS+RWSHVCLLS+RNLAFARLL QIIKL
Sbjct: 215 ESPAFLEQIHGDICGPVDPPCGPFRYFMVLIDASTRWSHVCLLSTRNLAFARLLTQIIKL 274

Query: 122 RAQFSDYTIKNIRLDNTCEFTSQAFNNYCMSTGINIEHPVAHIHTQNGLAKSFIKHLQLI 181
           RAQFSD+ IK IRLDN  E++S AF++YCMS GI +EHPVA++HTQNGLA+S IK LQLI
Sbjct: 275 RAQFSDFPIKKIRLDNAGEYSSHAFDDYCMSIGITVEHPVAYVHTQNGLAESLIKRLQLI 334

Query: 182 ARPLLMRAKLPLSIWGHASLHPVSLICIRPTSYHKYSLTQLTYGQKPNISHLRIFGCAVY 241
           ARPLLMR+KLP S WGHA LH  +L+ IRPT+YH YS  QLT+G +PNISHLRIFGCAVY
Sbjct: 335 ARPLLMRSKLPSSAWGHAILHAATLVRIRPTNYHTYSPLQLTFGYEPNISHLRIFGCAVY 394

Query: 242 VPISPPQRTKMGPQRRLGIYVGFEFPSIIRYLEPLMGDVFTARFADCHFNETNFPTLWER 301
           VPI+PPQR K+ PQRRLGIYVG+E PSII+Y+EPL GD+FTARFADCHF+E++FPTL   
Sbjct: 395 VPIAPPQRRKLSPQRRLGIYVGYESPSIIKYMEPLTGDLFTARFADCHFDESHFPTLGGD 454

Query: 302 IKKLENEIVWNVSLLSHLDPRTKQCELEVQKIIHLQSVANQMPDAFTDTKKVTKSYIPAA 361
             + + EI W +S L+ LD RTK+CELEVQ+IIHLQ +ANQ+PDAF D+K+VTKS+IPA 
Sbjct: 455 KNQPKKEITWKIS-LNFLDSRTKECELEVQRIIHLQKIANQLPDAFNDSKRVTKSHIPAE 514

Query: 362 NTPSRIEIPTQQVDTINESELRQKRGRLMGSKDKNPRKRKVTNSRNDLIDNRNIQEKVMD 421
           N P +I++P  Q+ + NES+ R KRGR +GSKDKNPRK++        +D   I +K+  
Sbjct: 515 NAPIKIDVPEGQITSANESKARLKRGRPLGSKDKNPRKKRG-------VDESTISDKIQP 574

Query: 422 MTSGKNVEKTLVYKDNNDISINYTMTEKMWNRINVVVDNIFAYNVAHNIIHENEDYEPKS 481
                  E  L   +  + SIN+  ++K WNR  +++DNIFAYN+A +I+ E+ED+EP+S
Sbjct: 575 PEEVAPKEPILEENEIMENSINFVTSKKSWNRKEIIIDNIFAYNIALDIMAEDEDHEPRS 634

Query: 482 VDEWHNRKDWPK 494
           VDE   R DWPK
Sbjct: 635 VDECRGRNDWPK 638

[Close]

BLAST of Cmc01g0012621 vs. ExPASy TrEMBL
Match: A0A1U9WYD5 (Pol OS=Coffea canephora OX=49390 GN=Pol PE=4 SV=1)

HSP 1 Score: 657.5 bits (1695), Expect = 4.3e-185
Identity = 320/492 (65.04%), Postives = 390/492 (79.27%), Query Frame = 0


Query: 2   FTVWHDRLGHPGSIMMRRIIENSHGHPLNNQKILQSNELSCIACSQRKLIIRPSPAKVGV 61
           F +WHDRLGHPGSIMMRRIIENSHGH L N+K+L++NE SC+ACSQ KLIIRPS  KVG 
Sbjct: 155 FIIWHDRLGHPGSIMMRRIIENSHGHSLKNKKVLKANEFSCVACSQGKLIIRPSQVKVGT 214

Query: 62  ELPTFLKGIHGDIYGPINPPSGPFRYFMVLIDASSRWSHVCLLSSRNLAFARLLAQIIKL 121
           E P FL+ IHGDI GP++PP GPFRYFMVLIDAS+RWSHVCLLS+RNLAFARLLAQIIKL
Sbjct: 215 ESPAFLERIHGDICGPVDPPCGPFRYFMVLIDASTRWSHVCLLSTRNLAFARLLAQIIKL 274

Query: 122 RAQFSDYTIKNIRLDNTCEFTSQAFNNYCMSTGINIEHPVAHIHTQNGLAKSFIKHLQLI 181
           RAQF D+ IK IRLDN  E++S AF++YCMS GI +EHPVA++HTQNGLA+S IK LQLI
Sbjct: 275 RAQFPDFPIKKIRLDNAGEYSSHAFDDYCMSIGITVEHPVAYVHTQNGLAESLIKRLQLI 334

Query: 182 ARPLLMRAKLPLSIWGHASLHPVSLICIRPTSYHKYSLTQLTYGQKPNISHLRIFGCAVY 241
           ARPLLMR+KLP S WGHA LH  +L+ IRPTSYH YS  QLT+G +PNISHLRIFGCAVY
Sbjct: 335 ARPLLMRSKLPSSAWGHAILHAATLVRIRPTSYHTYSPLQLTFGYEPNISHLRIFGCAVY 394

Query: 242 VPISPPQRTKMGPQRRLGIYVGFEFPSIIRYLEPLMGDVFTARFADCHFNETNFPTLWER 301
           VPI+P QR K+G QRRLGIYVG+E PSII+Y+EPL GD+FTARFADCHF+E++FPTL   
Sbjct: 395 VPIAPLQRRKLGLQRRLGIYVGYESPSIIKYMEPLTGDLFTARFADCHFDESHFPTLGGD 454

Query: 302 IKKLENEIVWNVSLLSHLDPRTKQCELEVQKIIHLQSVANQMPDAFTDTKKVTKSYIPAA 361
             + + EI W +S L+ LD RTK+CELEVQ+IIHLQ +ANQ+PDAF D+K+VTKS+IPA 
Sbjct: 455 KNQPKKEITWKIS-LNFLDSRTKECELEVQRIIHLQKIANQLPDAFNDSKRVTKSHIPAE 514

Query: 362 NTPSRIEIPTQQVDTINESELRQKRGRLMGSKDKNPRKRKVTNSRNDLIDNRNIQEKVMD 421
           N P +I++P +Q+ + NES+ R KRGR +GSKDKNPRK++        ID   I +K+  
Sbjct: 515 NAPIKIDVPEEQITSANESKARLKRGRPLGSKDKNPRKKRG-------IDESTISDKIQP 574

Query: 422 MTSGKNVEKTLVYKDNNDISINYTMTEKMWNRINVVVDNIFAYNVAHNIIHENEDYEPKS 481
                  E  L   +  + SIN+  + K WNR  +++DNIFAYN+A +I+ E+ED+EP+S
Sbjct: 575 PEEVAPKEPILEENETIENSINFVTSRKSWNRKEIIIDNIFAYNIALDIMAEDEDHEPRS 634

Query: 482 VDEWHNRKDWPK 494
           VDE   R DWPK
Sbjct: 635 VDECRGRNDWPK 638

[Close]

BLAST of Cmc01g0012621 vs. ExPASy TrEMBL
Match: A0A438ETU3 (Copia protein OS=Vitis vinifera OX=29760 GN=GIP_69 PE=4 SV=1)

HSP 1 Score: 648.7 bits (1672), Expect = 2.0e-182
Identity = 329/530 (62.08%), Postives = 395/530 (74.53%), Query Frame = 0


Query: 1   MFTVWHDRLGHPGSIMMRRIIENSHGHPLNNQKILQSNELSCIACSQRKLIIRPSPAKVG 60
           +F +WHDRLGHPGS MMRRIIE+SHGHPL NQKIL  NE SC ACSQ KLIIRPS  KV 
Sbjct: 34  VFVLWHDRLGHPGSSMMRRIIEHSHGHPLKNQKILSPNEYSCAACSQGKLIIRPSFTKVI 93

Query: 61  VELPTFLKGIHGDIYGPINPPSGPFRYFMVLIDASSRWSHVCLLSSRNLAFARLLAQIIK 120
            E P FL+ IHGDI GPI+PP GPFRYFM+LIDAS+RWSHVCLLS+RN+AFARLLAQII+
Sbjct: 94  SESPIFLERIHGDICGPIHPPCGPFRYFMILIDASTRWSHVCLLSTRNVAFARLLAQIIR 153

Query: 121 LRAQFSDYTIKNIRLDNTCEFTSQAFNNYCMSTGINIEHPVAHIHTQNGLAKSFIKHLQL 180
           LRAQF DY IK IRLDN  EFTSQ F NYCMS GINIEHPVAH HTQNGLA+SFIK LQL
Sbjct: 154 LRAQFPDYPIKTIRLDNAGEFTSQTFINYCMSVGINIEHPVAHTHTQNGLAESFIKRLQL 213

Query: 181 IARPLLMRAKLPLSIWGHASLHPVSLICIRPTSYHKYSLTQLTYGQKPNISHLRIFGCAV 240
           IARPLLM+ KLP S WGHA +H  +L+ IRPT+YH+YS +QL  G++PNISHLRIFGCAV
Sbjct: 214 IARPLLMKTKLPTSAWGHAIMHDAALVRIRPTTYHEYSPSQLVLGKQPNISHLRIFGCAV 273

Query: 241 YVPISPPQRTKMGPQRRLGIYVGFEFPSIIRYLEPLMGDVFTARFADCHFNETNFPTLW- 300
           YVPI+P QRTKMGPQRRLG+YVGF+ PSII+YLEPL GDVFTARFADCHFNE+ FP+L  
Sbjct: 274 YVPIAPTQRTKMGPQRRLGVYVGFDSPSIIKYLEPLTGDVFTARFADCHFNESVFPSLGR 333

Query: 301 -ERIKKLENEIVWNVSLLSHLDPRTKQCELEVQKIIHLQSVANQMPDAFTDTKKVTKSYI 360
            + I +   EI W  S ++HLDPRT QCELEVQ+IIHLQ++ANQ+PDAF DTKKVTKS+I
Sbjct: 334 EKSIPEERREISWKTSTMTHLDPRTNQCELEVQRIIHLQNLANQLPDAFIDTKKVTKSHI 393

Query: 361 PAANTPSRIEIPTQQVDTINESELRQKRGRLMGSKDKNPRKRKVTNSRNDLIDNRNIQEK 420
           PAANTP+RI++P  Q+   NES++R KRGR +GSKD  PRKR+       L       E+
Sbjct: 394 PAANTPARIDVPVGQL--TNESKIRLKRGRPVGSKDVTPRKRRTQEKLGTL-------EE 453

Query: 421 VMDMTSGKNVEKTLVYK-----------------------------------DNNDISIN 480
            + MT    ++K++  +                                   +N +IS++
Sbjct: 454 TIKMTDQFKIDKSIALEEAQIMQKAPEEVHIEQETPEDPHIEREAPEEAQVPENCEISVS 513

Query: 481 YTMTEKMWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDEWHNRKDWPK 494
           Y  T + W+R N+V++NIFA+ VA +II  +ED EP++V+E  +R DWPK
Sbjct: 514 YVQTGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPK 554

[Close]

BLAST of Cmc01g0012621 vs. ExPASy TrEMBL
Match: A0A1U9WYE0 (Pol OS=Coffea arabica OX=13443 GN=Pol PE=4 SV=1)

HSP 1 Score: 646.7 bits (1667), Expect = 7.6e-182
Identity = 316/492 (64.23%), Postives = 386/492 (78.46%), Query Frame = 0


Query: 2   FTVWHDRLGHPGSIMMRRIIENSHGHPLNNQKILQSNELSCIACSQRKLIIRPSPAKVGV 61
           F +WHDRLGH GSIMMRRIIENSHGH L N+K+L++NE SC+ACSQ KLIIRPS  KVG 
Sbjct: 155 FIIWHDRLGHLGSIMMRRIIENSHGHSLKNKKVLKANEFSCVACSQGKLIIRPSQVKVGT 214

Query: 62  ELPTFLKGIHGDIYGPINPPSGPFRYFMVLIDASSRWSHVCLLSSRNLAFARLLAQIIKL 121
           E P FL+ IHGDI GP++PP GPFRYFMVLIDAS+RWSHVCLLS+RNLAFARLL QIIKL
Sbjct: 215 ESPAFLERIHGDICGPVDPPCGPFRYFMVLIDASTRWSHVCLLSTRNLAFARLLGQIIKL 274

Query: 122 RAQFSDYTIKNIRLDNTCEFTSQAFNNYCMSTGINIEHPVAHIHTQNGLAKSFIKHLQLI 181
           RAQF D+ IK IRLDN  E++S AF++YCMS GI +EHPVA++HTQNGLA+S IK LQLI
Sbjct: 275 RAQFPDFPIKKIRLDNAGEYSSHAFDDYCMSIGITVEHPVAYVHTQNGLAESLIKRLQLI 334

Query: 182 ARPLLMRAKLPLSIWGHASLHPVSLICIRPTSYHKYSLTQLTYGQKPNISHLRIFGCAVY 241
           ARPLLMR+KLP S WGHA LH  +L+ I PTSYH YS  QLT+G +PNISHLRIFGCAVY
Sbjct: 335 ARPLLMRSKLPSSAWGHAILHAATLVRISPTSYHTYSPLQLTFGYEPNISHLRIFGCAVY 394

Query: 242 VPISPPQRTKMGPQRRLGIYVGFEFPSIIRYLEPLMGDVFTARFADCHFNETNFPTLWER 301
           VPI+PPQR K+G QRRLGIYVG+E PSII+Y+EPL GD+FTARFADCHF+E++F TL   
Sbjct: 395 VPIAPPQRRKLGLQRRLGIYVGYESPSIIKYMEPLTGDLFTARFADCHFDESHFSTLGGD 454

Query: 302 IKKLENEIVWNVSLLSHLDPRTKQCELEVQKIIHLQSVANQMPDAFTDTKKVTKSYIPAA 361
             + + EI W +S L+ LD RTK+CELEVQ+IIHLQ +ANQ+PDAF D+K+VTKS+IPA 
Sbjct: 455 KNQPKKEITWKIS-LNFLDSRTKECELEVQRIIHLQKIANQLPDAFNDSKRVTKSHIPAE 514

Query: 362 NTPSRIEIPTQQVDTINESELRQKRGRLMGSKDKNPRKRKVTNSRNDLIDNRNIQEKVMD 421
           N P +I++P +Q+ + NES+ R KRGR +GSKDKNPRK++        ID   I +K+  
Sbjct: 515 NAPIKIDVPEEQITSANESKARLKRGRPLGSKDKNPRKKRE-------IDESTISDKIQP 574

Query: 422 MTSGKNVEKTLVYKDNNDISINYTMTEKMWNRINVVVDNIFAYNVAHNIIHENEDYEPKS 481
                  E  L   +  + SIN+  + K WNR  +++DNIFAYN+A +I+ E+ED+E +S
Sbjct: 575 PEEVAPKEPILEENETIENSINFITSRKSWNRKEIIIDNIFAYNIALDIMAEDEDHELRS 634

Query: 482 VDEWHNRKDWPK 494
           VDE   R DWPK
Sbjct: 635 VDECRGRNDWPK 638

[Close]

BLAST of Cmc01g0012621 vs. ExPASy TrEMBL
Match: A0A438K4P3 (Copia protein OS=Vitis vinifera OX=29760 GN=GIP_114 PE=4 SV=1)

HSP 1 Score: 644.4 bits (1661), Expect = 3.8e-181
Identity = 329/540 (60.93%), Postives = 396/540 (73.33%), Query Frame = 0


Query: 1   MFTVWHDRLGHPGSIMMRRIIENSHGHPLNNQKILQSNELSCIACSQRKLIIRPSPAKVG 60
           +F +WHDRLGHPGS MMRRIIE+SHGHPL NQKIL  NE SC ACSQ KLIIRPS  KV 
Sbjct: 34  VFVLWHDRLGHPGSSMMRRIIEHSHGHPLKNQKILSPNEYSCAACSQGKLIIRPSFTKVI 93

Query: 61  VELPTFLKGIHGDIYGPINPPSGPFRYFMVLIDASSRWSHVCLLSSRNLAFARLLAQIIK 120
            E P FL+ IHGDI GPI+PP GPFRYFM+LIDAS+RWSHVCLLS+RN+AFARLLAQII+
Sbjct: 94  SESPIFLERIHGDICGPIHPPCGPFRYFMILIDASTRWSHVCLLSTRNVAFARLLAQIIR 153

Query: 121 LRAQFSDYTIKNIRLDNTCEFTSQAFNNYCMSTGINIEHPVAHIHTQNGLAKSFIKHLQL 180
           LRAQF DY IK IRLDN  EFTSQ F +YCMS GINIEHPVAH HTQNGLA+SFIK LQL
Sbjct: 154 LRAQFPDYPIKTIRLDNAGEFTSQTFIDYCMSVGINIEHPVAHTHTQNGLAESFIKRLQL 213

Query: 181 IARPLLMRAKLPLSIWGHASLHPVSLICIRPTSYHKYSLTQLTYGQKPNISHLRIFGCAV 240
           IARPLLM+ KLP S WGHA +H  +L+ IRPT+YH+YS +QL  G++PNISHLRIFGCAV
Sbjct: 214 IARPLLMKTKLPTSAWGHAIMHAAALVRIRPTTYHEYSPSQLVLGKQPNISHLRIFGCAV 273

Query: 241 YVPISPPQRTKMGPQRRLGIYVGFEFPSIIRYLEPLMGDVFTARFADCHFNETNFPTLW- 300
           YVPI+P QRTKMGPQRRLG+YVGF+ PSIIRYLEPL GDVFTARFADCHFNE+ FP+L  
Sbjct: 274 YVPIAPTQRTKMGPQRRLGVYVGFDSPSIIRYLEPLTGDVFTARFADCHFNESVFPSLGR 333

Query: 301 -ERIKKLENEIVWNVSLLSHLDPRTKQCELEVQKIIHLQSVANQMPDAFTDTKKVTKSYI 360
            + I +   EI W  S ++HLDPRT QCELEVQ+IIHLQ++ANQ+PDAF DTKKVTKS+I
Sbjct: 334 EKSIPEERREISWKTSTMTHLDPRTNQCELEVQRIIHLQNLANQLPDAFIDTKKVTKSHI 393

Query: 361 PAANTPSRIEIPTQQVDTINESELRQKRGRLMGSKDKNPRKRKVTNSRNDLIDNRNIQEK 420
           PAANTP+RI++P  Q+   NES++R KRGR +GSKD  PRKR+     + L       E+
Sbjct: 394 PAANTPARIDVPVGQL--TNESKIRLKRGRPVGSKDVTPRKRRTQEKLSTL-------EE 453

Query: 421 VMDMTSGKNVEKTLVYK------------------------------------------- 480
            + MT    ++K++  +                                           
Sbjct: 454 AIKMTDQFKIDKSIALEEAQIMQKAPEEVHIEQEVPEEAHIEQETSEDPHIEREAPEEAQ 513

Query: 481 --DNNDISINYTMTEKMWNRINVVVDNIFAYNVAHNIIHENEDYEPKSVDEWHNRKDWPK 494
             +N +IS++Y  T + W+R N+V++NIFA+ VA +II  +ED EP++V+E  +R DWPK
Sbjct: 514 VPENCEISVSYVQTGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPK 564

The following BLAST results are available for this feature:

BLAST of Cmc01g0012621 vs. NCBI nr


Match Name	E-value	Identity	Description
AQY61300.1	1.8e-185	64.84	Pol [Coffea eugenioides]	[more]
AQY61299.1	8.9e-185	65.04	Pol [Coffea canephora]	[more]
RVW51062.1	4.1e-182	62.08	Copia protein [Vitis vinifera]	[more]
AQY61295.1	1.6e-181	64.23	Pol [Coffea arabica]	[more]
RVX16158.1	7.8e-181	60.93	Copia protein [Vitis vinifera]	[more]

BLAST of Cmc01g0012621 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.9e-21	26.88	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.9e-20	24.76	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	3.1e-15	26.58	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.7e-13	26.87	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc01g0012621 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1U9WYB0	8.7e-186	64.84	Pol OS=Coffea eugenioides OX=49369 GN=Pol PE=4 SV=1	[more]
A0A1U9WYD5	4.3e-185	65.04	Pol OS=Coffea canephora OX=49390 GN=Pol PE=4 SV=1	[more]
A0A438ETU3	2.0e-182	62.08	Copia protein OS=Vitis vinifera OX=29760 GN=GIP_69 PE=4 SV=1	[more]
A0A1U9WYE0	7.6e-182	64.23	Pol OS=Coffea arabica OX=13443 GN=Pol PE=4 SV=1	[more]
A0A438K4P3	3.8e-181	60.93	Copia protein OS=Vitis vinifera OX=29760 GN=GIP_114 PE=4 SV=1	[more]

BLAST of Cmc01g0012621 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 3..49 e-value: 1.1E-7 score: 31.6
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 65..235 e-value: 3.6E-21 score: 77.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 385..405
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 60..179 score: 10.783255
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 69..218

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0012621.1	Cmc01g0012621.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016779	nucleotidyltransferase activity