Cmc01g0012031 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0012031
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr01: 7805788 .. 7806474 (-)
RNA-Seq Expression	Cmc01g0012031
Synteny	Cmc01g0012031

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTATCACTGGTAATGATCCACAGGCCATATCCGATCTCCAACACTACCTTGGTCAACATTTTGAAATGAAAGACCTTGGGTCTCTCAACTACTTTCTTGGTCTTGAATTCTCTCGGCGCTCGGACGGGTATCTATTGTCCCAAGCTAAATATGCCTCTGATCTTTTAGCCCGCTCAGGAATTACTGACTCTAACACAGCTTCAACGCCGTTAGATCCCAATGTTCATTTAACCCCTTATGATGGTTTTCCTCTTGAAGATGTCAGTCTGTACGGGCAACTCGTTGGCAGTCTCATCTATCTAACAGTGACTCGCCCAGACATTGCATATGCTGTTCACATTGTTAGCCAATTTATGGCTGCTCCTCGAACCATCCACTTTACTGCCGTACTTCGTATCCTTCGCTATGTCAAGGGAACCTTGGGACATGGACTTCAGTTTTCTTCTCAATCCTCTCTTGTATTATCTGGCTATTTCGATGCAGATTGGGCTGGGGATCCCACTGATCGGCGTTCTACAACCGGTTACTGCTTCTACTTAGGCGATTTTCTCATTTCTTGGTGTAGTAAGAAACAAAGTGTTGTCTCTCGTTCTAGTACTGAATCAGAATATCGTGCTCTTGCTCATGCTACCGCCGAACTTATATGGCTTCATTGGCTTCTTGTTGATATGGGTGTTCCCTAG

mRNA sequence

ATGATTATCACTGGTAATGATCCACAGGCCATATCCGATCTCCAACACTACCTTGGTCAACATTTTGAAATGAAAGACCTTGGGTCTCTCAACTACTTTCTTGGTCTTGAATTCTCTCGGCGCTCGGACGGGTATCTATTGTCCCAAGCTAAATATGCCTCTGATCTTTTAGCCCGCTCAGGAATTACTGACTCTAACACAGCTTCAACGCCGTTAGATCCCAATGTTCATTTAACCCCTTATGATGGTTTTCCTCTTGAAGATGTCAGTCTGTACGGGCAACTCGTTGGCAGTCTCATCTATCTAACAGTGACTCGCCCAGACATTGCATATGCTGTTCACATTGTTAGCCAATTTATGGCTGCTCCTCGAACCATCCACTTTACTGCCGTACTTCGTATCCTTCGCTATGTCAAGGGAACCTTGGGACATGGACTTCAGTTTTCTTCTCAATCCTCTCTTGTATTATCTGGCTATTTCGATGCAGATTGGGCTGGGGATCCCACTGATCGGCGTTCTACAACCGGTTACTGCTTCTACTTAGGCGATTTTCTCATTTCTTGGTGTAGTAAGAAACAAAGTGTTGTCTCTCGTTCTAGTACTGAATCAGAATATCGTGCTCTTGCTCATGCTACCGCCGAACTTATATGGCTTCATTGGCTTCTTGTTGATATGGGTGTTCCCTAG

Coding sequence (CDS)

ATGATTATCACTGGTAATGATCCACAGGCCATATCCGATCTCCAACACTACCTTGGTCAACATTTTGAAATGAAAGACCTTGGGTCTCTCAACTACTTTCTTGGTCTTGAATTCTCTCGGCGCTCGGACGGGTATCTATTGTCCCAAGCTAAATATGCCTCTGATCTTTTAGCCCGCTCAGGAATTACTGACTCTAACACAGCTTCAACGCCGTTAGATCCCAATGTTCATTTAACCCCTTATGATGGTTTTCCTCTTGAAGATGTCAGTCTGTACGGGCAACTCGTTGGCAGTCTCATCTATCTAACAGTGACTCGCCCAGACATTGCATATGCTGTTCACATTGTTAGCCAATTTATGGCTGCTCCTCGAACCATCCACTTTACTGCCGTACTTCGTATCCTTCGCTATGTCAAGGGAACCTTGGGACATGGACTTCAGTTTTCTTCTCAATCCTCTCTTGTATTATCTGGCTATTTCGATGCAGATTGGGCTGGGGATCCCACTGATCGGCGTTCTACAACCGGTTACTGCTTCTACTTAGGCGATTTTCTCATTTCTTGGTGTAGTAAGAAACAAAGTGTTGTCTCTCGTTCTAGTACTGAATCAGAATATCGTGCTCTTGCTCATGCTACCGCCGAACTTATATGGCTTCATTGGCTTCTTGTTGATATGGGTGTTCCCTAG

Protein sequence

MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEFSRRSDGYLLSQAKYASDLLARSGITDSNTASTPLDPNVHLTPYDGFPLEDVSLYGQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFYLGDFLISWCSKKQSVVSRSSTESEYRALAHATAELIWLHWLLVDMGVP

Homology

[Close]

BLAST of Cmc01g0012031 vs. NCBI nr
Match: KAA0054647.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 434.1 bits (1115), Expect = 7.4e-118
Identity = 217/228 (95.18%), Postives = 218/228 (95.61%), Query Frame = 0


Query: 1    MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEFSRRSDGYLLSQAKYASDLLARS 60
            MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLE SRRSDGYLLSQAKY SDLLARS
Sbjct: 862  MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYTSDLLARS 921

Query: 61   GITDSNTASTPLDPNVHLTPYDGFPLEDVSLYGQLVGSLIYLTVTRPDIAYAVHIVSQFM 120
            GITDSNTASTPLDPNVHLTPYDG PLEDVSLY QLVGSLIYLTVTRPDIAYAVHIVSQFM
Sbjct: 922  GITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 981

Query: 121  AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
            AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGY DADWAGDPTDRRSTTGYCFY
Sbjct: 982  AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFY 1041

Query: 181  LGDFLISWCSKKQSVVSRSSTESEYRALAHATAELIWLHWLLVDMGVP 229
            LGD LISW SKKQSVVSRSSTESEYRALA ATAEL+WL WLL DMGVP
Sbjct: 1042 LGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVP 1089

[Close]

BLAST of Cmc01g0012031 vs. NCBI nr
Match: TYK30390.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 433.7 bits (1114), Expect = 9.7e-118
Identity = 215/228 (94.30%), Postives = 218/228 (95.61%), Query Frame = 0


Query: 1   MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEFSRRSDGYLLSQAKYASDLLARS 60
           MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLE SRRSDGYLLSQAKYASDLLARS
Sbjct: 89  MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 148

Query: 61  GITDSNTASTPLDPNVHLTPYDGFPLEDVSLYGQLVGSLIYLTVTRPDIAYAVHIVSQFM 120
           GITDSNTASTPLDPNVHLTPYDG PLE+VSLY QLVGSLIYLTVTRPDI YAVHIVSQFM
Sbjct: 149 GITDSNTASTPLDPNVHLTPYDGVPLEEVSLYRQLVGSLIYLTVTRPDIVYAVHIVSQFM 208

Query: 121 AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
           AAPRTIHFTAVLRILRY+KGTLGHGLQFSSQSSLVLSGY DADWAGDPTDRRSTTGYCFY
Sbjct: 209 AAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFY 268

Query: 181 LGDFLISWCSKKQSVVSRSSTESEYRALAHATAELIWLHWLLVDMGVP 229
           LGD LISW SKKQSVVSRSSTESEYRALA  TAEL+WLHWLL DMGVP
Sbjct: 269 LGDSLISWRSKKQSVVSRSSTESEYRALADTTAELLWLHWLLADMGVP 316

[Close]

BLAST of Cmc01g0012031 vs. NCBI nr
Match: KAA0060225.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 433.7 bits (1114), Expect = 9.7e-118
Identity = 217/228 (95.18%), Postives = 219/228 (96.05%), Query Frame = 0


Query: 1    MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEFSRRSDGYLLSQAKYASDLLARS 60
            MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLE SRRS+GYLLSQAKYASDLLARS
Sbjct: 876  MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSNGYLLSQAKYASDLLARS 935

Query: 61   GITDSNTASTPLDPNVHLTPYDGFPLEDVSLYGQLVGSLIYLTVTRPDIAYAVHIVSQFM 120
            GITDSNTASTPLDPNVHLTPYDG PLEDVSLY QLVGSLIYLTVTRPDIAYAVHIVSQFM
Sbjct: 936  GITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 995

Query: 121  AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
            AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGY DADWAGDPTDRRSTTGYCFY
Sbjct: 996  AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFY 1055

Query: 181  LGDFLISWCSKKQSVVSRSSTESEYRALAHATAELIWLHWLLVDMGVP 229
            LGD LISW SKKQSVVSRSSTESEYRALA ATAEL+WL WLL DMGVP
Sbjct: 1056 LGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVP 1103

[Close]

BLAST of Cmc01g0012031 vs. NCBI nr
Match: TYK21532.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 433.7 bits (1114), Expect = 9.7e-118
Identity = 217/228 (95.18%), Postives = 219/228 (96.05%), Query Frame = 0


Query: 1    MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEFSRRSDGYLLSQAKYASDLLARS 60
            MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLE SRRSDGYLLSQAKYASDLLARS
Sbjct: 862  MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 921

Query: 61   GITDSNTASTPLDPNVHLTPYDGFPLEDVSLYGQLVGSLIYLTVTRPDIAYAVHIVSQFM 120
            GITDSNTASTPLDPNVHLTPYDG PLE+VSLY QLVGSLIYLTVTRPDIAYAVHIVSQFM
Sbjct: 922  GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 981

Query: 121  AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
            AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGY DADWAGDPTDRRSTTGYCFY
Sbjct: 982  AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFY 1041

Query: 181  LGDFLISWCSKKQSVVSRSSTESEYRALAHATAELIWLHWLLVDMGVP 229
            LGD LISW SKKQSVVSRSSTESEYRALA ATAEL+WL WLL DMGVP
Sbjct: 1042 LGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVP 1089

[Close]

BLAST of Cmc01g0012031 vs. NCBI nr
Match: KAA0037745.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 431.8 bits (1109), Expect = 3.7e-117
Identity = 216/228 (94.74%), Postives = 218/228 (95.61%), Query Frame = 0


Query: 1    MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEFSRRSDGYLLSQAKYASDLLARS 60
            MIITGNDP AISDLQHYLGQHFEMKDLGSLNYFLGLE SRRSDGYLLSQAKYASDLLARS
Sbjct: 1022 MIITGNDPHAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 1081

Query: 61   GITDSNTASTPLDPNVHLTPYDGFPLEDVSLYGQLVGSLIYLTVTRPDIAYAVHIVSQFM 120
            GITDSNTASTPLDPNVHLTPYDG PLE+VSLY QLVGSLIYLTVTRPDIAYAVHIVSQFM
Sbjct: 1082 GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 1141

Query: 121  AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
            AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGY DADWAGDPTDRRSTTGYCFY
Sbjct: 1142 AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFY 1201

Query: 181  LGDFLISWCSKKQSVVSRSSTESEYRALAHATAELIWLHWLLVDMGVP 229
            LGD LISW SKKQSVVSRSSTESEYRALA ATAEL+WL WLL DMGVP
Sbjct: 1202 LGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVP 1249

[Close]

BLAST of Cmc01g0012031 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 6.2e-51
Identity = 107/227 (47.14%), Postives = 143/227 (63.00%), Query Frame = 0


Query: 1    MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEFSRRSDGYLLSQAKYASDLLARS 60
            ++ITGNDP  + +    L Q F +KD   L+YFLG+E  R   G  LSQ +Y  DLLAR+
Sbjct: 1154 ILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLART 1213

Query: 61   GITDSNTASTPLDPNVHLTPYDGFPLEDVSLYGQLVGSLIYLTVTRPDIAYAVHIVSQFM 120
             +  +   +TP+ P+  L+ Y G  L D + Y  +VGSL YL  TRPDI+YAV+ +SQFM
Sbjct: 1214 NMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFM 1273

Query: 121  AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
              P   H  A+ RILRY+ GT  HG+     ++L L  Y DADWAGD  D  ST GY  Y
Sbjct: 1274 HMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVY 1333

Query: 181  LGDFLISWCSKKQSVVSRSSTESEYRALAHATAELIWLHWLLVDMGV 228
            LG   ISW SKKQ  V RSSTE+EYR++A+ ++E+ W+  LL ++G+
Sbjct: 1334 LGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGI 1380

[Close]

BLAST of Cmc01g0012031 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.8e-48
Identity = 102/227 (44.93%), Postives = 141/227 (62.11%), Query Frame = 0


Query: 1    MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEFSRRSDGYLLSQAKYASDLLARS 60
            ++ITGND   +      L Q F +K+   L+YFLG+E  R   G  LSQ +Y  DLLAR+
Sbjct: 1137 ILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLART 1196

Query: 61   GITDSNTASTPLDPNVHLTPYDGFPLEDVSLYGQLVGSLIYLTVTRPDIAYAVHIVSQFM 120
             +  +   +TP+  +  LT + G  L D + Y  +VGSL YL  TRPD++YAV+ +SQ+M
Sbjct: 1197 NMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYM 1256

Query: 121  AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
              P   H+ A+ R+LRY+ GT  HG+     ++L L  Y DADWAGD  D  ST GY  Y
Sbjct: 1257 HMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVY 1316

Query: 181  LGDFLISWCSKKQSVVSRSSTESEYRALAHATAELIWLHWLLVDMGV 228
            LG   ISW SKKQ  V RSSTE+EYR++A+ ++EL W+  LL ++G+
Sbjct: 1317 LGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGI 1363

[Close]

BLAST of Cmc01g0012031 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 4.6e-46
Identity = 99/217 (45.62%), Postives = 134/217 (61.75%), Query Frame = 0


Query: 1   MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEFSRRSDGYLLSQAKYASDLLARS 60
           +++TG+    ++ L   L   F MKDLG ++YFLG++      G  LSQ KYA  +L  +
Sbjct: 10  ILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNA 69

Query: 61  GITDSNTASTPLDPNVHLTPYDGFPLEDVSLYGQLVGSLIYLTVTRPDIAYAVHIVSQFM 120
           G+ D    STPL   ++ +        D S +  +VG+L YLT+TRPDI+YAV+IV Q M
Sbjct: 70  GMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRM 129

Query: 121 AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
             P    F  + R+LRYVKGT+ HGL     S L +  + D+DWAG  + RRSTTG+C +
Sbjct: 130 HEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTF 189

Query: 181 LGDFLISWCSKKQSVVSRSSTESEYRALAHATAELIW 218
           LG  +ISW +K+Q  VSRSSTE+EYRALA   AEL W
Sbjct: 190 LGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc01g0012031 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.5e-33
Identity = 97/237 (40.93%), Postives = 131/237 (55.27%), Query Frame = 0


Query: 1    MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEF--SRRSDGYLLSQAKYASDLLA 60
            M+I G D   I+ L+  L + F+MKDLG     LG++    R S    LSQ KY   +L 
Sbjct: 1012 MLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLE 1071

Query: 61   RSGITDSNTASTPLDPNVHL-------TPYDGFPLEDVSLYGQLVGSLIYLTV-TRPDIA 120
            R  + ++   STPL  ++ L       T  +   +  V  Y   VGSL+Y  V TRPDIA
Sbjct: 1072 RFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVP-YSSAVGSLMYAMVCTRPDIA 1131

Query: 121  YAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTD 180
            +AV +VS+F+  P   H+ AV  ILRY++GT G  L F   S  +L GY DAD AGD  +
Sbjct: 1132 HAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGG-SDPILKGYTDADMAGDIDN 1191

Query: 181  RRSTTGYCFYLGDFLISWCSKKQSVVSRSSTESEYRALAHATAELIWLHWLLVDMGV 228
            R+S+TGY F      ISW SK Q  V+ S+TE+EY A      E+IWL   L ++G+
Sbjct: 1192 RKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGL 1246

[Close]

BLAST of Cmc01g0012031 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 141.7 bits (356), Expect = 1.0e-32
Identity = 81/232 (34.91%), Postives = 133/232 (57.33%), Query Frame = 0


Query: 1    MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEFSRRSDGYLLSQAKYASDLLARS 60
            ++I   D   +++ + YL + F M DL  + +F+G+    + D   LSQ+ Y   +L++ 
Sbjct: 1091 VVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKF 1150

Query: 61   GITDSNTASTPLDPNVHLTPYDGFPLEDVSL-YGQLVGSLIYLTV-TRPDIAYAVHIVSQ 120
             + + N  STPL   ++    +    ED +     L+G L+Y+ + TRPD+  AV+I+S+
Sbjct: 1151 NMENCNAVSTPLPSKINYELLNSD--EDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSR 1210

Query: 121  FMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSL--VLSGYFDADWAGDPTDRRSTTG 180
            + +   +  +  + R+LRY+KGT+   L F    +    + GY D+DWAG   DR+STTG
Sbjct: 1211 YSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTG 1270

Query: 181  YCFYLGDF-LISWCSKKQSVVSRSSTESEYRALAHATAELIWLHWLLVDMGV 228
            Y F + DF LI W +K+Q+ V+ SSTE+EY AL  A  E +WL +LL  + +
Sbjct: 1271 YLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINI 1320

[Close]

BLAST of Cmc01g0012031 vs. ExPASy TrEMBL
Match: A0A5A7UJ79 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004570 PE=4 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 3.6e-118
Identity = 217/228 (95.18%), Postives = 218/228 (95.61%), Query Frame = 0


Query: 1    MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEFSRRSDGYLLSQAKYASDLLARS 60
            MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLE SRRSDGYLLSQAKY SDLLARS
Sbjct: 862  MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYTSDLLARS 921

Query: 61   GITDSNTASTPLDPNVHLTPYDGFPLEDVSLYGQLVGSLIYLTVTRPDIAYAVHIVSQFM 120
            GITDSNTASTPLDPNVHLTPYDG PLEDVSLY QLVGSLIYLTVTRPDIAYAVHIVSQFM
Sbjct: 922  GITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 981

Query: 121  AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
            AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGY DADWAGDPTDRRSTTGYCFY
Sbjct: 982  AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFY 1041

Query: 181  LGDFLISWCSKKQSVVSRSSTESEYRALAHATAELIWLHWLLVDMGVP 229
            LGD LISW SKKQSVVSRSSTESEYRALA ATAEL+WL WLL DMGVP
Sbjct: 1042 LGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVP 1089

[Close]

BLAST of Cmc01g0012031 vs. ExPASy TrEMBL
Match: A0A5A7V2X4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold386G00530 PE=4 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 4.7e-118
Identity = 217/228 (95.18%), Postives = 219/228 (96.05%), Query Frame = 0


Query: 1    MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEFSRRSDGYLLSQAKYASDLLARS 60
            MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLE SRRS+GYLLSQAKYASDLLARS
Sbjct: 876  MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSNGYLLSQAKYASDLLARS 935

Query: 61   GITDSNTASTPLDPNVHLTPYDGFPLEDVSLYGQLVGSLIYLTVTRPDIAYAVHIVSQFM 120
            GITDSNTASTPLDPNVHLTPYDG PLEDVSLY QLVGSLIYLTVTRPDIAYAVHIVSQFM
Sbjct: 936  GITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 995

Query: 121  AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
            AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGY DADWAGDPTDRRSTTGYCFY
Sbjct: 996  AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFY 1055

Query: 181  LGDFLISWCSKKQSVVSRSSTESEYRALAHATAELIWLHWLLVDMGVP 229
            LGD LISW SKKQSVVSRSSTESEYRALA ATAEL+WL WLL DMGVP
Sbjct: 1056 LGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVP 1103

[Close]

BLAST of Cmc01g0012031 vs. ExPASy TrEMBL
Match: A0A5D3DD70 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00150 PE=4 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 4.7e-118
Identity = 217/228 (95.18%), Postives = 219/228 (96.05%), Query Frame = 0


Query: 1    MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEFSRRSDGYLLSQAKYASDLLARS 60
            MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLE SRRSDGYLLSQAKYASDLLARS
Sbjct: 862  MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 921

Query: 61   GITDSNTASTPLDPNVHLTPYDGFPLEDVSLYGQLVGSLIYLTVTRPDIAYAVHIVSQFM 120
            GITDSNTASTPLDPNVHLTPYDG PLE+VSLY QLVGSLIYLTVTRPDIAYAVHIVSQFM
Sbjct: 922  GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 981

Query: 121  AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
            AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGY DADWAGDPTDRRSTTGYCFY
Sbjct: 982  AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFY 1041

Query: 181  LGDFLISWCSKKQSVVSRSSTESEYRALAHATAELIWLHWLLVDMGVP 229
            LGD LISW SKKQSVVSRSSTESEYRALA ATAEL+WL WLL DMGVP
Sbjct: 1042 LGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVP 1089

[Close]

BLAST of Cmc01g0012031 vs. ExPASy TrEMBL
Match: A0A5D3E4B0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2254G00020 PE=4 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 4.7e-118
Identity = 215/228 (94.30%), Postives = 218/228 (95.61%), Query Frame = 0


Query: 1   MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEFSRRSDGYLLSQAKYASDLLARS 60
           MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLE SRRSDGYLLSQAKYASDLLARS
Sbjct: 89  MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 148

Query: 61  GITDSNTASTPLDPNVHLTPYDGFPLEDVSLYGQLVGSLIYLTVTRPDIAYAVHIVSQFM 120
           GITDSNTASTPLDPNVHLTPYDG PLE+VSLY QLVGSLIYLTVTRPDI YAVHIVSQFM
Sbjct: 149 GITDSNTASTPLDPNVHLTPYDGVPLEEVSLYRQLVGSLIYLTVTRPDIVYAVHIVSQFM 208

Query: 121 AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
           AAPRTIHFTAVLRILRY+KGTLGHGLQFSSQSSLVLSGY DADWAGDPTDRRSTTGYCFY
Sbjct: 209 AAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFY 268

Query: 181 LGDFLISWCSKKQSVVSRSSTESEYRALAHATAELIWLHWLLVDMGVP 229
           LGD LISW SKKQSVVSRSSTESEYRALA  TAEL+WLHWLL DMGVP
Sbjct: 269 LGDSLISWRSKKQSVVSRSSTESEYRALADTTAELLWLHWLLADMGVP 316

[Close]

BLAST of Cmc01g0012031 vs. ExPASy TrEMBL
Match: A0A5A7VIT8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00050 PE=4 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 1.8e-117
Identity = 216/228 (94.74%), Postives = 218/228 (95.61%), Query Frame = 0


Query: 1    MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEFSRRSDGYLLSQAKYASDLLARS 60
            MIITGNDP AISDLQHYLGQHFEMKDLGSLNYFLGLE SRRSDGYLLSQAKYASDLLARS
Sbjct: 1022 MIITGNDPHAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 1081

Query: 61   GITDSNTASTPLDPNVHLTPYDGFPLEDVSLYGQLVGSLIYLTVTRPDIAYAVHIVSQFM 120
            GITDSNTASTPLDPNVHLTPYDG PLE+VSLY QLVGSLIYLTVTRPDIAYAVHIVSQFM
Sbjct: 1082 GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 1141

Query: 121  AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
            AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGY DADWAGDPTDRRSTTGYCFY
Sbjct: 1142 AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFY 1201

Query: 181  LGDFLISWCSKKQSVVSRSSTESEYRALAHATAELIWLHWLLVDMGVP 229
            LGD LISW SKKQSVVSRSSTESEYRALA ATAEL+WL WLL DMGVP
Sbjct: 1202 LGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVP 1249

[Close]

BLAST of Cmc01g0012031 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 204.5 bits (519), Expect = 8.9e-53
Identity = 104/228 (45.61%), Postives = 148/228 (64.91%), Query Frame = 0


Query: 1   MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEFSRRSDGYLLSQAKYASDLLARS 60
           +II  N+  A+ +L+  L   F+++DLG L YFLGLE +R + G  + Q KYA DLL  +
Sbjct: 287 IIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDET 346

Query: 61  GITDSNTASTPLDPNVHLTPYDGFPLEDVSLYGQLVGSLIYLTVTRPDIAYAVHIVSQFM 120
           G+     +S P+DP+V  + + G    D   Y +L+G L+YL +TR DI++AV+ +SQF 
Sbjct: 347 GLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFS 406

Query: 121 AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
            APR  H  AV++IL Y+KGT+G GL +SSQ+ + L  + DA +      RRST GYC +
Sbjct: 407 EAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMF 466

Query: 181 LGDFLISWCSKKQSVVSRSSTESEYRALAHATAELIWLHWLLVDMGVP 229
           LG  LISW SKKQ VVS+SS E+EYRAL+ AT E++WL     ++ +P
Sbjct: 467 LGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLP 514

[Close]

BLAST of Cmc01g0012031 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 186.0 bits (471), Expect = 3.3e-47
Identity = 99/217 (45.62%), Postives = 134/217 (61.75%), Query Frame = 0


Query: 1   MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEFSRRSDGYLLSQAKYASDLLARS 60
           +++TG+    ++ L   L   F MKDLG ++YFLG++      G  LSQ KYA  +L  +
Sbjct: 10  ILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNA 69

Query: 61  GITDSNTASTPLDPNVHLTPYDGFPLEDVSLYGQLVGSLIYLTVTRPDIAYAVHIVSQFM 120
           G+ D    STPL   ++ +        D S +  +VG+L YLT+TRPDI+YAV+IV Q M
Sbjct: 70  GMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRM 129

Query: 121 AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
             P    F  + R+LRYVKGT+ HGL     S L +  + D+DWAG  + RRSTTG+C +
Sbjct: 130 HEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTF 189

Query: 181 LGDFLISWCSKKQSVVSRSSTESEYRALAHATAELIW 218
           LG  +ISW +K+Q  VSRSSTE+EYRALA   AEL W
Sbjct: 190 LGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc01g0012031 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 89.7 bits (221), Expect = 3.2e-18
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 100 IYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGY 159
           +YLT+TRPD+ +AV+ +SQF +A RT    AV ++L YVKGT+G GL +S+ S L L  +
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 160 FDADWAGDPTDRRSTTGYC 179
            D+DWA  P  RRS TG+C
Sbjct: 61  ADSDWASCPDTRRSVTGFC 79

The following BLAST results are available for this feature:

BLAST of Cmc01g0012031 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054647.1	7.4e-118	95.18	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK30390.1	9.7e-118	94.30	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0060225.1	9.7e-118	95.18	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK21532.1	9.7e-118	95.18	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0037745.1	3.7e-117	94.74	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc01g0012031 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	6.2e-51	47.14	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	3.8e-48	44.93	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92519	4.6e-46	45.62	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
P10978	1.5e-33	40.93	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.0e-32	34.91	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Cmc01g0012031 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UJ79	3.6e-118	95.18	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V2X4	4.7e-118	95.18	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DD70	4.7e-118	95.18	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3E4B0	4.7e-118	94.30	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7VIT8	1.8e-117	94.74	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc01g0012031 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	8.9e-53	45.61	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	3.3e-47	45.62	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	3.2e-18	51.90	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..72 e-value: 1.1E-13 score: 51.3
None	No IPR available	PANTHER	PTHR11439:SF268	ATP-DEPENDENT DNA HELICASE	coord: 16..221
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 16..221
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 158..228 e-value: 1.92571E-42 score: 138.755

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0012031.1	Cmc01g0012031.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding