Cmc01g0008291 (gene) Melon (Charmono) v1.1

Overview
NameCmc01g0008291
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionUnknown protein
LocationCMiso1.1chr01: 3233432 .. 3234173 (+)
RNA-Seq ExpressionCmc01g0008291
SyntenyCmc01g0008291
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCTAAGATCATCCAAAACCCAAACGCTTACGCTGTTCCCCTACGCAGCAGAACAAAACCCCACCATCTTATATAATCACAATCTGGACGGCTACAAATCCAAACATTTTATTTACTTAATTTTTTTATAACTTTGCCCTTTTGGAATATGACTCATTTCCACCTCCGTCTTCTCCTCGCCATTTTTCTTCTTCTTCTAACTCCCACTACAACCGCCACCGCCGCCTTCCAACCAAGGATTCCGATGAGAAAGCAAGTCATTTTCCGGCCGTCTTCACCCTCAGTAGTTCACAAATCTACAGACTTTGAAGATCAAAAGCGAAGAGTCCCCACCGGATCAAACCCTTTACACAACAAACGGTGATATTAATCATTATTATTCTTATATTTCACAAAGTTTCTCTCAATTTATTGTTATTATTATTATTTTTTTTTTAATTTACCCAGTATATTTTATTTTTTTTTTGTGTTTAGTTTTAATTTTATATGGTAGTCTTGGACTATAGAGAAGGCTTTAGATCGAATAGTGAGGAGTTGGTAAATGGTGAAGGGGGTGTTTTTCATTTTTTAGGGAAACTCATGTAGAAAATTTTGGTATTTGTATTTGTATTTCTATTATTTTTTTTCTTTTTTGGGTGTTGTAAATTTTTGCAGGCTACTACTCTCTAATTAGAGGTGATCTGATTATACAATATTAACCAATGTATATATATTAAATAAATAGAGAATTTTTCATTAATTG

mRNA sequence

GGCTAAGATCATCCAAAACCCAAACGCTTACGCTGTTCCCCTACGCAGCAGAACAAAACCCCACCATCTTATATAATCACAATCTGGACGGCTACAAATCCAAACATTTTATTTACTTAATTTTTTTATAACTTTGCCCTTTTGGAATATGACTCATTTCCACCTCCGTCTTCTCCTCGCCATTTTTCTTCTTCTTCTAACTCCCACTACAACCGCCACCGCCGCCTTCCAACCAAGGATTCCGATGAGAAAGCAAGTCATTTTCCGGCCGTCTTCACCCTCAGTAGTTCACAAATCTACAGACTTTGAAGATCAAAAGCGAAGAGTCCCCACCGGATCAAACCCTTTACACAACAAACGGTGATATTAATCATTATTATTCTTATATTTCACAAAGTTTCTCTCAATTTATTGTTATTATTATTATTTTTTTTTTAATTTACCCAGTATATTTTATTTTTTTTTTGTGTTTAGTTTTAATTTTATATGGTAGTCTTGGACTATAGAGAAGGCTTTAGATCGAATAGTGAGGAGTTGGTAAATGGTGAAGGGGGTGTTTTTCATTTTTTAGGGAAACTCATGTAGAAAATTTTGGTATTTGTATTTGTATTTCTATTATTTTTTTTCTTTTTTGGGTGTTGTAAATTTTTGCAGGCTACTACTCTCTAATTAGAGGTGATCTGATTATACAATATTAACCAATGTATATATATTAAATAAATAGAGAATTTTTCATTAATTG

Coding sequence (CDS)

ATGACTCATTTCCACCTCCGTCTTCTCCTCGCCATTTTTCTTCTTCTTCTAACTCCCACTACAACCGCCACCGCCGCCTTCCAACCAAGGATTCCGATGAGAAAGCAAGTCATTTTCCGGCCGTCTTCACCCTCAGTAGTTCACAAATCTACAGACTTTGAAGATCAAAAGCGAAGAGTCCCCACCGGATCAAACCCTTTACACAACAAACGGTGA

Protein sequence

MTHFHLRLLLAIFLLLLTPTTTATAAFQPRIPMRKQVIFRPSSPSVVHKSTDFEDQKRRVPTGSNPLHNKR
Homology
BLAST of Cmc01g0008291 vs. NCBI nr
Match: KAG6572280.1 (hypothetical protein SDJN03_29008, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.4 bits (241), Expect = 5.1e-17
Identity = 57/74 (77.03%), Postives = 63/74 (85.14%), Query Frame = 0

Query: 1  MTHFHLRLLLAIFLLLLTPTTTAT---AAFQPRIPMRKQVIFRPSSPSVVHKSTDFEDQK 60
          MTHFHL L+LAIF LLLTPTTTAT   AA QPRI MRKQV+FRP SPS  +K T++E+QK
Sbjct: 1  MTHFHLSLVLAIF-LLLTPTTTATAASAAAQPRILMRKQVVFRPPSPS-PYKFTNYEEQK 60

Query: 61 RRVPTGSNPLHNKR 72
          RRVPTGSNPLHNKR
Sbjct: 61 RRVPTGSNPLHNKR 72

BLAST of Cmc01g0008291 vs. NCBI nr
Match: KAG6589151.1 (hypothetical protein SDJN03_17716, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.5 bits (210), Expect = 2.0e-13
Identity = 50/65 (76.92%), Postives = 52/65 (80.00%), Query Frame = 0

Query: 1  MTHFHLRLLLAIFLLLLTPTTTAT---AAFQPRIPMRKQVIFRPSSPSVVHKSTDFEDQK 60
          MTHFHLRLLL I LLLLTPTT AT   AA +PRI +RKQVIFRPSSPS   K  DFEDQK
Sbjct: 1  MTHFHLRLLLPILLLLLTPTTAATVASAAVRPRISLRKQVIFRPSSPSTT-KPIDFEDQK 60

Query: 61 RRVPT 63
          RRVPT
Sbjct: 61 RRVPT 64

BLAST of Cmc01g0008291 vs. NCBI nr
Match: TQD79294.1 (hypothetical protein C1H46_035131 [Malus baccata])

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-04
Identity = 35/75 (46.67%), Postives = 45/75 (60.00%), Query Frame = 0

Query: 1  MTHFHLRLLLAIFLLLLTPTTTA-TAAFQPRIPMRKQVIFRP---SSPSVVHKSTDFEDQ 60
          M  F + LL A+ +LL  P T A   +F      R Q +FRP   S+PS   ++ DF  +
Sbjct: 1  MNRFQICLLFALLILLFAPRTHAIRRSFPSPSSARSQQVFRPSMTSAPSTRDQARDFVSE 60

Query: 61 KRRVPTGSNPLHNKR 72
          +RRVPTGSNPLHNKR
Sbjct: 61 ERRVPTGSNPLHNKR 75

BLAST of Cmc01g0008291 vs. NCBI nr
Match: TQE07771.1 (hypothetical protein C1H46_006704 [Malus baccata])

HSP 1 Score: 55.5 bits (132), Expect = 2.2e-04
Identity = 34/76 (44.74%), Postives = 44/76 (57.89%), Query Frame = 0

Query: 1  MTHFHLRLLLAIFLLLLTPTTTA-TAAFQPRIPMRKQVIFRPSSPSVV----HKSTDFED 60
          M  F + LL A+ +L   P T A   +F      R Q +FRPS  S      H++ +FE 
Sbjct: 1  MNRFQICLLFALLILFFAPRTHAIRTSFPSPSSARSQQVFRPSVTSAPSTRDHEARNFES 60

Query: 61 QKRRVPTGSNPLHNKR 72
          +KR+VPTGSNPLHNKR
Sbjct: 61 EKRKVPTGSNPLHNKR 76

BLAST of Cmc01g0008291 vs. ExPASy TrEMBL
Match: A0A540KYI9 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_035131 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.3e-05
Identity = 35/75 (46.67%), Postives = 45/75 (60.00%), Query Frame = 0

Query: 1  MTHFHLRLLLAIFLLLLTPTTTA-TAAFQPRIPMRKQVIFRP---SSPSVVHKSTDFEDQ 60
          M  F + LL A+ +LL  P T A   +F      R Q +FRP   S+PS   ++ DF  +
Sbjct: 1  MNRFQICLLFALLILLFAPRTHAIRRSFPSPSSARSQQVFRPSMTSAPSTRDQARDFVSE 60

Query: 61 KRRVPTGSNPLHNKR 72
          +RRVPTGSNPLHNKR
Sbjct: 61 ERRVPTGSNPLHNKR 75

BLAST of Cmc01g0008291 vs. ExPASy TrEMBL
Match: A0A540N9P4 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_006704 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-04
Identity = 34/76 (44.74%), Postives = 44/76 (57.89%), Query Frame = 0

Query: 1  MTHFHLRLLLAIFLLLLTPTTTA-TAAFQPRIPMRKQVIFRPSSPSVV----HKSTDFED 60
          M  F + LL A+ +L   P T A   +F      R Q +FRPS  S      H++ +FE 
Sbjct: 1  MNRFQICLLFALLILFFAPRTHAIRTSFPSPSSARSQQVFRPSVTSAPSTRDHEARNFES 60

Query: 61 QKRRVPTGSNPLHNKR 72
          +KR+VPTGSNPLHNKR
Sbjct: 61 EKRKVPTGSNPLHNKR 76

BLAST of Cmc01g0008291 vs. ExPASy TrEMBL
Match: A0A2J6LEB3 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_7X92941 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.2e-04
Identity = 33/73 (45.21%), Postives = 40/73 (54.79%), Query Frame = 0

Query: 1  MTHFHLRLLLAIFLLLLTPTTTATAA--FQPRIPMRKQVIFRPSSPSVVHKSTDFEDQKR 60
          MTHFH+ + L       T TTTAT+   F P  P     +F   S S+   + D   +KR
Sbjct: 1  MTHFHIIISLIFLFFTTTTTTTATSTSNFPPAAPSGTHQLFH-RSRSMHPLANDLHSEKR 60

Query: 61 RVPTGSNPLHNKR 72
          RVPTG NPLHNKR
Sbjct: 61 RVPTGPNPLHNKR 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6572280.15.1e-1777.03hypothetical protein SDJN03_29008, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6589151.12.0e-1376.92hypothetical protein SDJN03_17716, partial [Cucurbita argyrosperma subsp. sorori... [more]
TQD79294.11.3e-0446.67hypothetical protein C1H46_035131 [Malus baccata][more]
TQE07771.12.2e-0444.74hypothetical protein C1H46_006704 [Malus baccata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A540KYI96.3e-0546.67Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_035131 PE=4 SV=1[more]
A0A540N9P41.1e-0444.74Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_006704 PE=4 SV=1[more]
A0A2J6LEB39.2e-0445.21Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_7X92941 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc01g0008291.1Cmc01g0008291.1mRNA