Cmc01g0004541 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0004541
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Cotton-golgi related protein
Location	CMiso1.1chr01: 1064084 .. 1068651 (-)
RNA-Seq Expression	Cmc01g0004541
Synteny	Cmc01g0004541

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTGAAGACTGAGAGAGAGTCTTGATGACAGACACCTCTCTAGCTTCTCCTCCGCTTTGAGAGTGAAGCGGGCGAAATCCAGATCTGAAACCACCTTCAAGATCTGAATCTCCTCCGTATCCTATCATTTCTAAGGAGCTTCAGTAAGCTTTTGTTTTTCCTAAATTCTTGTTCATTTCCCATTCTCAATTCACTTTATCTCTCCTAATTTTCATTTCTTTGACTTCGATTGTGTGAAATTTGCCGTTTTTATGATATCTGATTCCTTTTTCTTGAAACCCATTTGATATTTTATGCTAATAGTGTGTGTGTTTTGGTTTTTGGTTGTATTCTGATTTGGGTTTTTTCGAGAATTGATTGTCCTGCGTGAAGGTTGGAACTTTTTGCCCTTTCTTTTTTGGGCTGTTCTTGGTTTACTTTTCATCTGCTTAATGATTTAAGTTATATAATCGGTGAGTAGCTCTTGAGCCAAGTCAATTAGATTCCGTATGTAAATTAGTTAATTAGCCGTTTGGCATTTAAGGATTTAATTGATTTTGATCATTTAATGTCAATTTTTGAAATGAGTAATGGATTCTTGGCTCAATATAATATGTTGCCTAAGGTGGTTTCTACTTTATTAGGTTGGAATTGTTTCTCAACATTTATTGGTTTTTTCCAGTTCTTGTGAATTTGCATTGTTGGTAAAAAGAATCTTGAATTTCGAGAGAAGTTGACAATGCTTAGAGACAAAATAACATCTTGCAAGATGCTGAAATTTTTTTAGCAAGTTTGACTGCACCGAGTTTTTTTGTTAAGTAGCTAAGATGTAGTGGGCACTGCAAATTTATGAATTTTACTTGTCGACTTGTGTGAGCCATTTCATTGTTACTACAAGAAAATTAGACAACTATGTCCGTCAACCGTTGCCTCTTTTTCTGTTTTGGAGTTTTGACATAAATTGGTGCCCTAGCGAAAACATCTTACTTGGAAATAGTGTTGTTATTGTTGATAAAGAAGTGTGGCTTTGCAGATTTTCACAAAATCATGTCAAGGAGGCCAGGAAATCCTTCTCGGCGTCTTGTTGATGGTGGGAGTCTTCCGTTTGTTGGAACAATACATTCTAAGACACGGTCATCACCTTTACTAACCATAGGGCTTGTTGTGGTACTTTTCCTTACTCCTCTCCTTTCCCTTTTCAGGAACAGTGGTTACATTTTGTTGTTGTGGGGGAAGGGTGGTCAAATGAGGGTCAAATGACTGAATAAATGTTACCTCCTTAACTTTTGGGAATAGTACTATTAGCCACTAATTTTAATTTGCTATGGTTAAAAATTTCAGGGTGCTATGCTTCTTGTTGGATTTTGCTACCGTCAAGCAGGTCTTTATTTTATCTCTTATCTTGACTTACTGTTAATTAATTCTCTTTCCATCATCAATATGCTTGTTTCTTTCTGTTAGGATGCTGTCTCTGCATTCACTTTAAATGAATTTTATGTCCACAGAATCACAGTCACTGAATTTTAGTATTGCAACACATGGACAGCTCCTCGTCCTTATATTCTCCTCATTCTATTTTGGTCACACTCTCTGCTGGAAATGCTCTCTCAATTGACTAAGTACTGTCTGAGAATTAGTCAGAGTCACTGATTTGGTCAAGTAGAGATTTACACCTTAGGCATAGTAGTCTGACTGCCACTTTCATAAGTGCCCTACTGCATTGCCCCCTTTTTTCAAAATTCAGGCTCCTATTCTACCCGGTCTCTTTAAATTTGAGCATGGACTGTGATATTGGAGAAACAGTTTCTTTTTGATAGACCCTGCCCATAACTTATCACTCAAGTGCTCTGATTATCTTGTAGCAGCTGGTCTCTAACAATGCTTGCTTTAGATAGTTGGTAAAGAGACATATCAATAGCTCTAGCTGAACTTGTACAAATTCATAATGGATATCTCCTACTAGCAAAACTATGTGAAACTGGTAGCTGAGAAGTAAGAAAAAGAGTGAGGGCATGTTTTTGTGATCGTGAACAAATCTGTCGACTATGCTGATATTCTTTTATTAGTTTTTGTTGATGTTGATTATTGAAAATTGTTCGGTTACTGATGGCTTGTGAATCCGTGATGCTCCCTCTTTTCTTAATGTAATAACTGTATATGTTTGCTTATTCATTGTTGATTTGCATGACAGGTGGATCAAGAAACAATTTAGAGGCTGTGAGTAGAGTTGAAGGTGAATATATTTTACTTTTTATGTATTCTTGAGTAAAAGCATAGTTTCACCAGAACTCAAGCCTGAAATACAATTGATATTGAAGTGGAGGTATTATAATTTGTCATTATTTCTTCTCCTTCCTTTACCTTCAGGCATTAAACTAGTCAACATGATCTGACCACTGCGTGTTCAGACTATATTACTTAACATTTTCTATCTTTATCTGCATGCATGGGCTGGGTTTAATGGGTAAAGTCCACTTAATTTGTCCAAATGGTTAATAGAACATAGTGCCTTGGGCTCTTGGGTTATATTTGATGCATCCTTAATGTGCCAAAGGCATTAAAAACTGTGGAAGAGAATTAATGATTGTTTTATCTTATTCAGAGAATCAGATCGATTTATTTTTGTTAATTAGTACCATCTATAGTAATTGTAAAAGGCACTTTTTCCCCAATCAAGTACCATAGTTGTTGCATCATATATCTTATTTGAAGATCTCAAGCATATATATATATATATATATATATATATATATATATATATATCATGTACGTAGGTAGTACATCGTGCACTGTAGAAGTCCAACGAGCGATTCCCATTCTAAAGAAAGCATATGGAGATAGCATGCATAAAGTATTGCATGTAGGCCCTGATACTTGCTCAGTGGTGTCTAAATTGTTAAAAGAAGAGGATACAGAAGCATGGGGTGTGGAGCCCTATGACTTAGATGATGTTGGTGCCAGTTGCAAAAGCCTTGTGCGGAAGGGTATTGTGCGTGCTGCTGATATTAAGTTTCCCCTTCCATATAGAGCAAAGTCGTTCTCTCTTGTCATTGTTTCAGATGCATTGGACTACTTGTCACCCAGATACCTTAACAGAACTCTTCCAGAACTGGCAAGGGTCTCCATTGATGGTGTTGTTATATTTGCCGGTAAACCACTGTTCATAAAGTTTGCCCATTTGAAATTTTAATCTTTTTCTATACACCTAATCTTGTTAGATGAGGGGGAACCGGAACACATTTTGTTTTATGCGTCTATATGGATAGCCCAAGTTACATTTTCTGTGGTTTTCCTTTATCTAATTTATAATCCTCTCTTTCACTCTGTGATAGAATTGCATAACAGGTAAAAACTCACTGGAGCAATTGTTAAATAGTCTTACATAGTTTTTTTCTCGATCACTGTATAGTGATCTGTGTTCTTCATTCTGTGTATATTCTGATACTTTCCCTTTACGATTTTGCAACTCGTGGTACATGAATTAATTTTGATGGATAAACTTCGACATTTTCTAATAAATCTCAAGTTGTCCTTTTTTGTCCTTTGATTGTATTAAAGTTATTAACTGTTCTCTCGTAAGTCCTAATGACAAAGAACACTTCTGATTGTTCCCATCACTTTTTGGTCTAAATTCATCTATTTACTTTGATTAGTCTAGATTGATTGATTTTATATCTCTCCTTTCAATGCTGTTTCAATTTGCAGGTTATCCAGGTCGGCAAAAGGCTAAAGATTCAGAACTACCCAAATTTGGACGTCCAGTAAGTACCTTCTTTTACTCTAGAAAGGTAGTTAGCAATAATAGTAATTGAATCGAAAGAGACTGGATGAATAGAATACGGAGCTTTCTAGAATTTAGTTATAGCTTGGAGACATTCTTTGGGCAGTTTGATGACTAGACTGGCCACGGATTGTAACCAATAGGGCTACTTTTGTGTCGGTCTTACAATTGATCTACAAATAGAAGAACCATCATGTGTGAACATGCGATGTATATGAACATACAAAATTGATTCATTGCTTCCTTGTTGTATTTCGAGCCTATTTTCCAAGCAGTAAAACAATCAAGATGAGATAGATCATAACACTGAGATAAATATTTGCTTGTCATGAAGGCGAAATTGCGAAGCTCGTCATGGTGGATAAGGTATTTCGTTCAGACAAGTTTAGATGAGAATGAAGCAGTGGTAAAGAAGTTTGATCAAGCAGCAACTAAGAGGTCCTACAGACCAGCATGTCAAGTTTTCCACCTCAAATCATACTCTTGAGAATCTCAAAGCTCAAAACTGTATTTCCTCTCAACATATTTTCAAACTTGCTTTTGTTTTTGCACAAAGTGCTTAGATGTCATTTCTCTCTTTTTCCTCTTCCCTTGCCCTCTTAAAAAGTTACATGGAAACTGAAGAGCTCTGCGATATGTTTAGATTGTCTTATATTAGCTGCCATTGTCAGTTCAGCAAGTTGCTATAGGTAAGAATAGAAACATTTCTCTCAAGTGTTGCACTTGTTTGTATCTTTGGTATATTATGATAATTACATGGCACAAGAATTGTGTTTTTTTTTCATGATTAATATGTATGATCTCTTTG

mRNA sequence

AGTGAAGACTGAGAGAGAGTCTTGATGACAGACACCTCTCTAGCTTCTCCTCCGCTTTGAGAGTGAAGCGGGCGAAATCCAGATCTGAAACCACCTTCAAGATCTGAATCTCCTCCGTATCCTATCATTTCTAAGGAGCTTCAATTTTCACAAAATCATGTCAAGGAGGCCAGGAAATCCTTCTCGGCGTCTTGTTGATGGTGGGAGTCTTCCGTTTGTTGGAACAATACATTCTAAGACACGGTCATCACCTTTACTAACCATAGGGCTTGTTGTGGGTGCTATGCTTCTTGTTGGATTTTGCTACCGTCAAGCAGGTGGATCAAGAAACAATTTAGAGGCTGTGAGTAGAGTTGAAGGTTATCCAGGTCGGCAAAAGGCTAAAGATTCAGAACTACCCAAATTTGGACGTCCAGCGAAATTGCGAAGCTCGTCATGGTGGATAAGGTATTTCGTTCAGACAAGTTTAGATGAGAATGAAGCAGTGGTAAAGAAGTTTGATCAAGCAGCAACTAAGAGGTCCTACAGACCAGCATGTCAAGTTTTCCACCTCAAATCATACTCTTGAGAATCTCAAAGCTCAAAACTGTATTTCCTCTCAACATATTTTCAAACTTGCTTTTGTTTTTGCACAAAGTGCTTAGATGTCATTTCTCTCTTTTTCCTCTTCCCTTGCCCTCTTAAAAAGTTACATGGAAACTGAAGAGCTCTGCGATATGTTTAGATTGTCTTATATTAGCTGCCATTGTCAGTTCAGCAAGTTGCTATAGGTAAGAATAGAAACATTTCTCTCAAGTGTTGCACTTGTTTGTATCTTTGGTATATTATGATAATTACATGGCACAAGAATTGTGTTTTTTTTTCATGATTAATATGTATGATCTCTTTG

Coding sequence (CDS)

ATGTCAAGGAGGCCAGGAAATCCTTCTCGGCGTCTTGTTGATGGTGGGAGTCTTCCGTTTGTTGGAACAATACATTCTAAGACACGGTCATCACCTTTACTAACCATAGGGCTTGTTGTGGGTGCTATGCTTCTTGTTGGATTTTGCTACCGTCAAGCAGGTGGATCAAGAAACAATTTAGAGGCTGTGAGTAGAGTTGAAGGTTATCCAGGTCGGCAAAAGGCTAAAGATTCAGAACTACCCAAATTTGGACGTCCAGCGAAATTGCGAAGCTCGTCATGGTGGATAAGGTATTTCGTTCAGACAAGTTTAGATGAGAATGAAGCAGTGGTAAAGAAGTTTGATCAAGCAGCAACTAAGAGGTCCTACAGACCAGCATGTCAAGTTTTCCACCTCAAATCATACTCTTGA

Protein sequence

MSRRPGNPSRRLVDGGSLPFVGTIHSKTRSSPLLTIGLVVGAMLLVGFCYRQAGGSRNNLEAVSRVEGYPGRQKAKDSELPKFGRPAKLRSSSWWIRYFVQTSLDENEAVVKKFDQAATKRSYRPACQVFHLKSYS

Homology

[Close]

BLAST of Cmc01g0004541 vs. NCBI nr
Match: XP_008455072.1 (PREDICTED: uncharacterized protein At3g49720 [Cucumis melo] >XP_008455073.1 PREDICTED: uncharacterized protein At3g49720 [Cucumis melo])

HSP 1 Score: 224.9 bits (572), Expect = 4.1e-55
Identity = 136/261 (52.11%), Postives = 136/261 (52.11%), Query Frame = 0


Query: 1   MSRRPGNPSRRLVDGGSLPFVGTIHSKTRSSPLLTIGLVVGAMLLVGFCYRQAGGSRNNL 60
           MSRRPGNPSRRLVDGGSLPFVGTIHSKTRSSPLLTIGLVVGAMLLVGFCYRQAGGSRNNL
Sbjct: 1   MSRRPGNPSRRLVDGGSLPFVGTIHSKTRSSPLLTIGLVVGAMLLVGFCYRQAGGSRNNL 60

Query: 61  EAVSRVE----------------------------------------------------- 120
           EAVSRVE                                                     
Sbjct: 61  EAVSRVEGSTSCTVEVQRAIPILKKAYGDSMHKVLHVGPDTCSVVSKLLKEEDTEAWGVE 120

Query: 121 ------------------------------------------------------------ 137
                                                                       
Sbjct: 121 PYDLDDVGASCKSLVRKGIVRAADIKFPLPYRAKSFSLVIVSDALDYLSPRYLNRTLPEL 180

[Close]

BLAST of Cmc01g0004541 vs. NCBI nr
Match: XP_004136920.1 (probable pectin methylesterase CGR3 [Cucumis sativus] >KGN43823.1 hypothetical protein Csa_017072 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 2.5e-52
Identity = 130/261 (49.81%), Postives = 133/261 (50.96%), Query Frame = 0


Query: 1   MSRRPGNPSRRLVDGGSLPFVGTIHSKTRSSPLLTIGLVVGAMLLVGFCYRQAGGSRNNL 60
           MSRRPGNPSRRLVDGG LPFVGTIHSKTRSSP LTIGLV+GAMLLVGFCY Q+GGSRN+L
Sbjct: 1   MSRRPGNPSRRLVDGGGLPFVGTIHSKTRSSPFLTIGLVLGAMLLVGFCYHQSGGSRNDL 60

Query: 61  EAVSRVE----------------------------------------------------- 120
           EAVSRVE                                                     
Sbjct: 61  EAVSRVEGSTSCTVEVQRAIPILKKAYGDSMHKVLHVGPDTCSVVSKLLKEEDTEAWGVE 120

Query: 121 ------------------------------------------------------------ 137
                                                                       
Sbjct: 121 PYDLDDADASCKSLVRKGIVRAADIKFPLPYRAKSFSLVIVSDALDYLSPRYLNRTLPEL 180

[Close]

BLAST of Cmc01g0004541 vs. NCBI nr
Match: KAA0031394.1 (putative transmembrane protein [Cucumis melo var. makuwa] >TYK06845.1 putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 209.9 bits (533), Expect = 1.4e-50
Identity = 136/289 (47.06%), Postives = 136/289 (47.06%), Query Frame = 0


Query: 1   MSRRPGNPSRRLVDGGSLPFVGTIHSKTRSSPLLTIGLVV-------------------- 60
           MSRRPGNPSRRLVDGGSLPFVGTIHSKTRSSPLLTIGLVV                    
Sbjct: 1   MSRRPGNPSRRLVDGGSLPFVGTIHSKTRSSPLLTIGLVVVLFLTPLLSLFRNSGYILLL 60

Query: 61  --------GAMLLVGFCYRQAGGSRNNLEAVSRVE------------------------- 120
                   GAMLLVGFCYRQAGGSRNNLEAVSRVE                         
Sbjct: 61  WGKGGQMRGAMLLVGFCYRQAGGSRNNLEAVSRVEGSTSCTVEVQRAIPILKKAYGDSMH 120

Query: 121 ------------------------------------------------------------ 137
                                                                       
Sbjct: 121 KVLHVGPDTCSVVSKLLKEEDTEAWGVEPYDLDDVGASCKSLVRKGIVRAADIKFPLPYR 180

[Close]

BLAST of Cmc01g0004541 vs. NCBI nr
Match: XP_038888696.1 (probable pectin methylesterase CGR3 [Benincasa hispida])

HSP 1 Score: 208.0 bits (528), Expect = 5.2e-50
Identity = 124/261 (47.51%), Postives = 133/261 (50.96%), Query Frame = 0


Query: 1   MSRRPGNPSRRLVDGGSLPFVGTIHSKTRSSPLLTIGLVVGAMLLVGFCYRQAGGSRNNL 60
           MSRRP NPSRRLVDGGSLPFVGTIHSKTRSSPLLTIGLVVG +LL+GFCY Q+GGSR+N+
Sbjct: 1   MSRRPVNPSRRLVDGGSLPFVGTIHSKTRSSPLLTIGLVVGTILLIGFCYHQSGGSRSNI 60

Query: 61  EAVSRVE----------------------------------------------------- 120
           EAVS+VE                                                     
Sbjct: 61  EAVSKVEGSTSCTAEVQRAIPILKKAYGDSMHKVLHLGPDTCSVVSKLLKEEDTEAWGVE 120

Query: 121 ------------------------------------------------------------ 137
                                                                       
Sbjct: 121 PYDLDDADASCKSLVRKGIVRAADIKFPLPYRAKSFSLVIVSDALDYLSPRYLNKTLPEL 180

[Close]

BLAST of Cmc01g0004541 vs. NCBI nr
Match: XP_023511500.1 (uncharacterized protein At3g49720-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 205.3 bits (521), Expect = 3.3e-49
Identity = 123/260 (47.31%), Postives = 132/260 (50.77%), Query Frame = 0


Query: 1   MSRRPGNPSRRLVDGGSLPFVGTIHSKTRSSPLLTIGLVVGAMLLVGFCYRQAGGSRNNL 60
           MSRRP NPSRRLVDGGSLPFVG+IHSK+RSSPLLTIGLVVGAMLL+GFCY Q+GGSR+N+
Sbjct: 1   MSRRPVNPSRRLVDGGSLPFVGSIHSKSRSSPLLTIGLVVGAMLLIGFCYHQSGGSRSNI 60

Query: 61  EAVSRVE----------------------------------------------------- 120
           EAVS+VE                                                     
Sbjct: 61  EAVSKVEGTLCTAEVQRAIPILKKAYGDSMRKVLHLGPDTCSVVSKLLKEEDTEAWGVEP 120

Query: 121 ------------------------------------------------------------ 137
                                                                       
Sbjct: 121 YDLDDADASCRHLVRKGFVRAADIKFLLPYRAKSFSLVIVSDALDYLSPRYLNKTLPELA 180

[Close]

BLAST of Cmc01g0004541 vs. ExPASy Swiss-Prot
Match: Q0WPN7 (Probable pectin methylesterase CGR3 OS=Arabidopsis thaliana OX=3702 GN=CGR3 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 8.6e-24
Identity = 51/73 (69.86%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 61  EAVSRVEGYPGRQKAKDSELPKFGRPAKLRSSSWWIRYFVQTSLDENEAVVKKFDQAATK 120
           + V  + G PG+QKAK  EL KFGRPAK+RSSSWWIR+F QT+L+ENEA  KKF+QAA+K
Sbjct: 183 DGVVLLAGNPGQQKAKGGELSKFGRPAKMRSSSWWIRFFSQTNLEENEAASKKFEQAASK 242

Query: 121 RSYRPACQVFHLK 134
            SY+PACQVFHLK
Sbjct: 243 SSYKPACQVFHLK 255

HSP 2 Score: 60.1 bits (144), Expect = 2.3e-08
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 1  MSRRPGNPSRRLVDGGSLPFVGTIHSKTRSSPLLTIGLV-VGAMLLVGFCYRQAGGSRNN 60
          MSRR     RR+ D GS PFVG +HSK+RSSPLL++ LV VGA LL+G+ Y    G   +
Sbjct: 1  MSRR---QVRRVGDSGSFPFVGALHSKSRSSPLLSVCLVLVGACLLIGYAY-SGPGMFKS 60

Query: 61 LEAVSRVEG 69
          +  VS++ G
Sbjct: 61 IREVSKITG 65

[Close]

BLAST of Cmc01g0004541 vs. ExPASy Swiss-Prot
Match: Q9M2Y6 (Probable pectin methylesterase CGR2 OS=Arabidopsis thaliana OX=3702 GN=CGR2 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-22
Identity = 81/258 (31.40%), Postives = 102/258 (39.53%), Query Frame = 0


Query: 1   MSRRPGNPSRRLVDGGSLPFVGTIHSKTRSSPLLTIGLV-VGAMLLVGFCYRQAG----- 60
           M+RR    +RR+ DGGS PF G +HSK+RSSPLL+I LV VGA LL+G+ Y   G     
Sbjct: 1   MARRQVGSTRRVGDGGSFPFAGALHSKSRSSPLLSICLVLVGACLLIGYAYSGPGIFKSI 60

Query: 61  -----------------------------GSRNNL------------------------- 120
                                        G R  L                         
Sbjct: 61  KEVSKVTGDYSCTAEVQRAIPVLKKAYGDGMRKVLHVGPDTCSVVSSLLKEEETEAWGVE 120

Query: 121 ------------------------------------------------------------ 134
                                                                       
Sbjct: 121 PYDIEDADSHCKSFVSKGLVRVADIKFPLPYRAKSFSLVIVSDALDYLSPKYLNKTVPEL 180

[Close]

BLAST of Cmc01g0004541 vs. ExPASy TrEMBL
Match: A0A1S3C061 (uncharacterized protein At3g49720 OS=Cucumis melo OX=3656 GN=LOC103495338 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.0e-55
Identity = 136/261 (52.11%), Postives = 136/261 (52.11%), Query Frame = 0


Query: 1   MSRRPGNPSRRLVDGGSLPFVGTIHSKTRSSPLLTIGLVVGAMLLVGFCYRQAGGSRNNL 60
           MSRRPGNPSRRLVDGGSLPFVGTIHSKTRSSPLLTIGLVVGAMLLVGFCYRQAGGSRNNL
Sbjct: 1   MSRRPGNPSRRLVDGGSLPFVGTIHSKTRSSPLLTIGLVVGAMLLVGFCYRQAGGSRNNL 60

Query: 61  EAVSRVE----------------------------------------------------- 120
           EAVSRVE                                                     
Sbjct: 61  EAVSRVEGSTSCTVEVQRAIPILKKAYGDSMHKVLHVGPDTCSVVSKLLKEEDTEAWGVE 120

Query: 121 ------------------------------------------------------------ 137
                                                                       
Sbjct: 121 PYDLDDVGASCKSLVRKGIVRAADIKFPLPYRAKSFSLVIVSDALDYLSPRYLNRTLPEL 180

[Close]

BLAST of Cmc01g0004541 vs. ExPASy TrEMBL
Match: A0A0A0K2U6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070220 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.2e-52
Identity = 130/261 (49.81%), Postives = 133/261 (50.96%), Query Frame = 0


Query: 1   MSRRPGNPSRRLVDGGSLPFVGTIHSKTRSSPLLTIGLVVGAMLLVGFCYRQAGGSRNNL 60
           MSRRPGNPSRRLVDGG LPFVGTIHSKTRSSP LTIGLV+GAMLLVGFCY Q+GGSRN+L
Sbjct: 1   MSRRPGNPSRRLVDGGGLPFVGTIHSKTRSSPFLTIGLVLGAMLLVGFCYHQSGGSRNDL 60

Query: 61  EAVSRVE----------------------------------------------------- 120
           EAVSRVE                                                     
Sbjct: 61  EAVSRVEGSTSCTVEVQRAIPILKKAYGDSMHKVLHVGPDTCSVVSKLLKEEDTEAWGVE 120

Query: 121 ------------------------------------------------------------ 137
                                                                       
Sbjct: 121 PYDLDDADASCKSLVRKGIVRAADIKFPLPYRAKSFSLVIVSDALDYLSPRYLNRTLPEL 180

[Close]

BLAST of Cmc01g0004541 vs. ExPASy TrEMBL
Match: A0A5D3C5Z4 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001490 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 6.6e-51
Identity = 136/289 (47.06%), Postives = 136/289 (47.06%), Query Frame = 0


Query: 1   MSRRPGNPSRRLVDGGSLPFVGTIHSKTRSSPLLTIGLVV-------------------- 60
           MSRRPGNPSRRLVDGGSLPFVGTIHSKTRSSPLLTIGLVV                    
Sbjct: 1   MSRRPGNPSRRLVDGGSLPFVGTIHSKTRSSPLLTIGLVVVLFLTPLLSLFRNSGYILLL 60

Query: 61  --------GAMLLVGFCYRQAGGSRNNLEAVSRVE------------------------- 120
                   GAMLLVGFCYRQAGGSRNNLEAVSRVE                         
Sbjct: 61  WGKGGQMRGAMLLVGFCYRQAGGSRNNLEAVSRVEGSTSCTVEVQRAIPILKKAYGDSMH 120

Query: 121 ------------------------------------------------------------ 137
                                                                       
Sbjct: 121 KVLHVGPDTCSVVSKLLKEEDTEAWGVEPYDLDDVGASCKSLVRKGIVRAADIKFPLPYR 180

[Close]

BLAST of Cmc01g0004541 vs. ExPASy TrEMBL
Match: A0A6J1I641 (uncharacterized protein At3g49720-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111471035 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.6e-49
Identity = 123/260 (47.31%), Postives = 132/260 (50.77%), Query Frame = 0


Query: 1   MSRRPGNPSRRLVDGGSLPFVGTIHSKTRSSPLLTIGLVVGAMLLVGFCYRQAGGSRNNL 60
           MSRRP NPSRRLVDGGSLPFVG+IHSK+RSSPLLTIGLVVGAMLL+GFCY Q+GGSR+N+
Sbjct: 1   MSRRPVNPSRRLVDGGSLPFVGSIHSKSRSSPLLTIGLVVGAMLLIGFCYHQSGGSRSNI 60

Query: 61  EAVSRVE----------------------------------------------------- 120
           EAVS+VE                                                     
Sbjct: 61  EAVSKVEGTLCTAEVQRAIPILKKAYGDSMRKVLHLGPDTCSVVSKLLKEEDTEAWGVEP 120

Query: 121 ------------------------------------------------------------ 137
                                                                       
Sbjct: 121 YDLDDADASCRRLVRKGFVRAADIKFLLPYRAKSFSLVIVSDALDYLSPRYLNKTLPELA 180

[Close]

BLAST of Cmc01g0004541 vs. ExPASy TrEMBL
Match: A0A6J1I8S3 (uncharacterized protein At3g49720-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471035 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.1e-49
Identity = 123/261 (47.13%), Postives = 132/261 (50.57%), Query Frame = 0


Query: 1   MSRRPGNPSRRLVDGGSLPFVGTIHSKTRSSPLLTIGLVVGAMLLVGFCYRQAGGSRNNL 60
           MSRRP NPSRRLVDGGSLPFVG+IHSK+RSSPLLTIGLVVGAMLL+GFCY Q+GGSR+N+
Sbjct: 1   MSRRPVNPSRRLVDGGSLPFVGSIHSKSRSSPLLTIGLVVGAMLLIGFCYHQSGGSRSNI 60

Query: 61  EAVSRVE----------------------------------------------------- 120
           EAVS+VE                                                     
Sbjct: 61  EAVSKVEGGTLCTAEVQRAIPILKKAYGDSMRKVLHLGPDTCSVVSKLLKEEDTEAWGVE 120

Query: 121 ------------------------------------------------------------ 137
                                                                       
Sbjct: 121 PYDLDDADASCRRLVRKGFVRAADIKFLLPYRAKSFSLVIVSDALDYLSPRYLNKTLPEL 180

[Close]

BLAST of Cmc01g0004541 vs. TAIR 10
Match: AT5G65810.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49720.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 111.3 bits (277), Expect = 6.1e-25
Identity = 51/73 (69.86%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 61  EAVSRVEGYPGRQKAKDSELPKFGRPAKLRSSSWWIRYFVQTSLDENEAVVKKFDQAATK 120
           + V  + G PG+QKAK  EL KFGRPAK+RSSSWWIR+F QT+L+ENEA  KKF+QAA+K
Sbjct: 183 DGVVLLAGNPGQQKAKGGELSKFGRPAKMRSSSWWIRFFSQTNLEENEAASKKFEQAASK 242

Query: 121 RSYRPACQVFHLK 134
            SY+PACQVFHLK
Sbjct: 243 SSYKPACQVFHLK 255

HSP 2 Score: 60.1 bits (144), Expect = 1.6e-09
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 1  MSRRPGNPSRRLVDGGSLPFVGTIHSKTRSSPLLTIGLV-VGAMLLVGFCYRQAGGSRNN 60
          MSRR     RR+ D GS PFVG +HSK+RSSPLL++ LV VGA LL+G+ Y    G   +
Sbjct: 1  MSRR---QVRRVGDSGSFPFVGALHSKSRSSPLLSVCLVLVGACLLIGYAY-SGPGMFKS 60

Query: 61 LEAVSRVEG 69
          +  VS++ G
Sbjct: 61 IREVSKITG 65

[Close]

BLAST of Cmc01g0004541 vs. TAIR 10
Match: AT3G49720.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 107.5 bits (267), Expect = 8.8e-24
Identity = 81/258 (31.40%), Postives = 102/258 (39.53%), Query Frame = 0


Query: 1   MSRRPGNPSRRLVDGGSLPFVGTIHSKTRSSPLLTIGLV-VGAMLLVGFCYRQAG----- 60
           M+RR    +RR+ DGGS PF G +HSK+RSSPLL+I LV VGA LL+G+ Y   G     
Sbjct: 1   MARRQVGSTRRVGDGGSFPFAGALHSKSRSSPLLSICLVLVGACLLIGYAYSGPGIFKSI 60

Query: 61  -----------------------------GSRNNL------------------------- 120
                                        G R  L                         
Sbjct: 61  KEVSKVTGDYSCTAEVQRAIPVLKKAYGDGMRKVLHVGPDTCSVVSSLLKEEETEAWGVE 120

Query: 121 ------------------------------------------------------------ 134
                                                                       
Sbjct: 121 PYDIEDADSHCKSFVSKGLVRVADIKFPLPYRAKSFSLVIVSDALDYLSPKYLNKTVPEL 180

[Close]

BLAST of Cmc01g0004541 vs. TAIR 10
Match: AT3G49720.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 107.5 bits (267), Expect = 8.8e-24
Identity = 81/258 (31.40%), Postives = 102/258 (39.53%), Query Frame = 0


Query: 1   MSRRPGNPSRRLVDGGSLPFVGTIHSKTRSSPLLTIGLV-VGAMLLVGFCYRQAG----- 60
           M+RR    +RR+ DGGS PF G +HSK+RSSPLL+I LV VGA LL+G+ Y   G     
Sbjct: 1   MARRQVGSTRRVGDGGSFPFAGALHSKSRSSPLLSICLVLVGACLLIGYAYSGPGIFKSI 60

Query: 61  -----------------------------GSRNNL------------------------- 120
                                        G R  L                         
Sbjct: 61  KEVSKVTGDYSCTAEVQRAIPVLKKAYGDGMRKVLHVGPDTCSVVSSLLKEEETEAWGVE 120

Query: 121 ------------------------------------------------------------ 134
                                                                       
Sbjct: 121 PYDIEDADSHCKSFVSKGLVRVADIKFPLPYRAKSFSLVIVSDALDYLSPKYLNKTVPEL 180

The following BLAST results are available for this feature:

BLAST of Cmc01g0004541 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455072.1	4.1e-55	52.11	PREDICTED: uncharacterized protein At3g49720 [Cucumis melo] >XP_008455073.1 PRED...	[more]
XP_004136920.1	2.5e-52	49.81	probable pectin methylesterase CGR3 [Cucumis sativus] >KGN43823.1 hypothetical p...	[more]
KAA0031394.1	1.4e-50	47.06	putative transmembrane protein [Cucumis melo var. makuwa] >TYK06845.1 putative t...	[more]
XP_038888696.1	5.2e-50	47.51	probable pectin methylesterase CGR3 [Benincasa hispida]	[more]
XP_023511500.1	3.3e-49	47.31	uncharacterized protein At3g49720-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cmc01g0004541 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0WPN7	8.6e-24	69.86	Probable pectin methylesterase CGR3 OS=Arabidopsis thaliana OX=3702 GN=CGR3 PE=2...	[more]
Q9M2Y6	1.2e-22	31.40	Probable pectin methylesterase CGR2 OS=Arabidopsis thaliana OX=3702 GN=CGR2 PE=2...	[more]

BLAST of Cmc01g0004541 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C061	2.0e-55	52.11	uncharacterized protein At3g49720 OS=Cucumis melo OX=3656 GN=LOC103495338 PE=4 S...	[more]
A0A0A0K2U6	1.2e-52	49.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070220 PE=4 SV=1	[more]
A0A5D3C5Z4	6.6e-51	47.06	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6J1I641	1.6e-49	47.31	uncharacterized protein At3g49720-like isoform X2 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1I8S3	2.1e-49	47.13	uncharacterized protein At3g49720-like isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of Cmc01g0004541 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65810.1	6.1e-25	69.86	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G49720.1	8.8e-24	31.40	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G49720.2	8.8e-24	31.40	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044689	Pectin methyltransferase CGR2/3	PANTHER	PTHR34208	S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED	coord: 67..135
IPR044689	Pectin methyltransferase CGR2/3	PANTHER	PTHR34208	S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED	coord: 1..68
None	No IPR available	PANTHER	PTHR34208:SF3	SUBFAMILY NOT NAMED	coord: 67..135 coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0004541.1	Cmc01g0004541.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045488	pectin metabolic process
molecular_function	GO:0008168	methyltransferase activity