Cmc01g0004331 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0004331
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	16S rRNA (uracil(1498)-N(3))-methyltransferase
Location	CMiso1.1chr01: 958969 .. 963231 (-)
RNA-Seq Expression	Cmc01g0004331
Synteny	Cmc01g0004331

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGGGAATAAAAAGGTATTTTTTTTCACATCGTAAGGCTTTTCCACCGGCGGCAAGTCCTCATGTTCCATAGTTGTTGTCCTTCCCAAATGCGAACTATAGGAGCATTTCGACCTCAATTGACACAGTTATTGATCCCCTCATCTTTAAGAAGCTTCAAAGTTAGAGCTCTCTCCTCTTCATCTCTGCCCTCCTCGAATCAATCTCGCGGTGGCCTTCCTCGCTTCTTTTCCCAAGTTCTACCTTCTCATAAGGCAATCCTTTTTTTTTTTTCAATTATTAAGTTTTTATATGATTGAAAATTGTGTATGGGTTGGGGTTGTGTTAGTTTTGGATGGGGTCTGTCGATTTGAATGGATTATTATTAACTTTTTCCTTTTTGGTTTAAGTGGAGTGTTGATGACTCGGAATTTTGGGAGACAAAGAATGTTGTCATTATGAGTGGGGTTCGTGTATTTTCATAGTGGGATGGGATGGGATGGGATGGGATGGATGATTATTTTCTTAGTGGCATCTCTGTCGGTCCCTTCAAGTAAGTCTTAGGAATTTTCCATATAATGATAGTAGAGGGAAGTTTAACTACTTTGTGTTATGTCATGCTGTAGTAAGCTTAATGCTTTACTTGATTTGATAGTTTTGTAAAGTTAGATTGTGGAAATGGAACTGCTCTTATATCATATGCTTCATCATTATCCAGGGTGATGTTATTCGTTTAGAAGGCGATGAAGTCTGGCATATGACTAAAGTATTGAGGTTGAAGACTAATGATAGGTACTACTTCTAATAGTCAACAGCAAAATGGTTTGCTGTTAGCTGGACATATGGGTTATTGGCTGGATTCTTTTCTCTATTTATCTGTTTGTTATCTTCATGATAATTGGATGTTAATGAAAGGGTGGAGCTGTTCAATGGAAATGGAGGTTTAGTTGAAGGGAGCATAAAGAACGTTCGTGTCAATGGACTTGACATCCTGGCTATGGAAGAACCAAAATCTGTTTTACCTCAAAGCACACAATGGCATGTATTTGCAGCTTGCGGTAAGATTCTTACAAGGAATCATCGAACTTTTAGTGCATCTTATATTCTTATGGCATGGAAGTTAACGTACCTCTGTTTAGGTACTCTAAAGGGTGGGCGTGCTGATTGGCTTGTTGAAAAATGTACAGTAAGTAAATATAGACGAAGGTGATGCAAATGAGAATTTGTGCTTCCTAATTTACTTGATGCCTTTTCACTTTATTTAGGAACTAGGTGCCAGCAGTGTAACTCCTCTGCTAACAGAACGTTGCCCTACCATATCTGATAACCGGGTTCACAGATTTGAACGTATCACATTGGCAGCAACTAAACAATGTGAGTCATTATTCAAGTCAAGTTTCTTTGTCTTTGGAGTGGGAACTTGAGACATTTCAATCTTGTTTGTTGCTTGACGTCTAACTACGTTTGGAAATTTCACACAACTTTCGTTGCAGGTCAAAGACTGCACCAAATGAATCTGAATTCTCCCTTGAAAATTGATGGTCTTTTGCCCCTTGTGAGTTGCAATCCAACTTTGTATTTCTTGACCTTCGAGTCTGACTTGGCTAACATAGAAAAGAGCTTTTCCTTTGTGCTAATAAACAAAATCATAAAAGAATCACGATTTATGTACATTTGCGTTATAGAATTAAGCATATTTCTACAACAAATGGTCAAGTACTTCTTGTACTAGTGATTAGGTGAAATGGTTTCATTTTTTATGGTTTTCTTGAAATTTTCAACATTCTGAGATTCAAGGTTGTAGATCCATCTTAAAAGTAATCATTATGATGTCCACTTGATGTGGCCTTTTTCATAAACGAATATTCTATTATTTTAGTAATTATATTAATAAATGATAAGCATCTGAGACATATTGATAAAGAGGAGAAAAGCAGTCTAGGAGCCGGAACCCCGGCCTGAAGAAACTACAAAAGAATTGCATGGCATTTTATACTACAGATTCTTTTCTCTTTAACTTAATTTCACAATCGCTTTGGTTTTATTTTGTTCCCTGTAGATTAATGAAACGAAGCTATCTTTTGTAGCAGTTGCAGAAGCGACACCTCTCGTAAGTGCATTAGCTTCAACAAAAATAGAGTCTGGTGGGCTTTTAGTTATCGGACCTGAAGGAGGTATATTTTATATTGTACTCCTGCTTCTGAAGATGAGTGCAATTTTCCTACAATATTAAAATGAGGTTTTTAGTGTAGTTAGTGTTTCAATATTCTGATGAAGAGGCATATTAAAGTCTTGCAAAAATTTCAGGATTCTGTAATCTGTCATGAATAGCATTTTTTTAAAAGAAATTTGTGATGGATTAAATGTCCATCATTATGTCAAAATTTTGGATGTGGTGGATGTATTTGTCGTCAAACTAATCTACCAAGAAATAGAGTAATAGCTCTTATACTTCATACTTTTTATCAGGAATTTTATCGTGCATGGAAAATTACCTATGCTATCTATTGTTAATTTTCCACCTACGGAATAATAAACCGGCAGTGGTTAATGTAATGCAAACAATTGTTTGGGTTACCAGATCATTTTAGTCTTGTTGGTGACATTAACTAGTACTTGAGTGACATCTCCCCTTCATTCTGGAGAATATCAAGAAATCCTTTACTTCTCTTCATTTAGTGCCATGCCTTTTCTTTTTTTATTTTCTTTTCTTCATCTTTTCCTCTTTTTTTATTCTTCAGACTTCACTGAGAAAGAGGTGAGCATGATGAAAGAAGCTGGAGCCATTGCAGTTGGTCTTGGCCCTTATCGACTTCGTGTTGAAACTGCAACAGTTGCAATCTTATCAACCCTCATGTTGTGGTCCGACTCAAAATGTTCCAACTGTTAATCTCTCTTTCAGGTTAGCCGTTGACCATCATATATTTCTGTATTGATAAATCAGATTTTCCTGCATATCTTTATCTAATTTATTTTTCTTCAAGGATGAACTAAAAATTTGAACGTGAAATAGATTTTGAAGGTAATATTAAATACCATTTTTGTCATTGAACTTTTAAATGTTGTCTTAAACCGTCAACTTCAAATGTTCTATTTTAAGTTTTTTTCGGGAAAAGTCTAGTCATTATTTTAATTTTTCATTAATCATTTAAAAGGAACCTAAAATCATTTGCAAACCTACCAAAACATGTTGTGGCTTGTTGGCTTAGTGGACTGCAGAGTTAGGCAGACTCAATGTTGAATCCACAGGTCGCAGGTTCAATCTGTTTAGGTATAAGATGAAGATGGATTTAACTCTGGTATTAATAAATAAACAAAATCATTTGCAAACCTGACTCTTAGTCTACTATATGAGAAGACTCAAGCACTCGTCTACATGGATGTTTTAGATAAATGCACACAAGATGTGTACCTATACCGAGTTGCATCCTTTAAATTCTACAAGTTGCATTTTTTGTTAATGGTTGCATTTCTGTAAAAAAATATTTAACCAACTCGAAGAAAGTACATGCCTGTTTGAATTATTAAAAATTAGTTTACAAACATGCTTCTTCTTCAAATTGGATTTTCACTTTATCCATCCACTGCGTTCTATCCCAAAACTTTTGTCTCATCTAAAAATTTGATTTCCACACAGTAGAGTTTCTTAGATCTTGTAAACGAGATGTTGCTTCTAGTATATGTTTCACCTTGGGAGACAAACTCTTGAAGCTCCTTAAATTTTTTTAAAGAAATAATGTGAATTTGTCAAGGTGTGTACGGTGAAAGTATTCTTCATACAAAATTATTTGAGTTGGTGTTTGCTAAATAGATCAACGAACGGTGGTAGTTTCTATCATTAAATTTCAAAAAAGTTTCCACTTAGAACACTAGAATCCGTTCTATTAGCTTCTAACTTTTTACGTTCACCGATCACAGGGTAGCTTCAAAATCAGCACCACTGCAAAGCCTCAACAGTATGAACGTTTGTGGTTTGAGGTATAATCTATTTGAGGATTGGTCTGTGATGATGGGACATCACGAGGAAGATTACAATTGTGTATTATGAGAAAGATTTCCTATACTAAAATTTCCATGTCATCCTTATGGTAGGGACCTATTGACATCAACAAAATTTGTAGAGTAAATACAGATAGTATTGATATTATGGGAGTAGTAGGAAATTATCCTTGTATTATGGTAGTTGAGTTGAAATGCATTTTTTGTTTTAGCGAACTACGTGGTTAAAATTTGATATGAATTCGATAGCCATTACATCAGATTCGAGAGATTGAAACGTTTTGG

mRNA sequence

TTTGGGAATAAAAAGGTATTTTTTTTCACATCGTAAGGCTTTTCCACCGGCGGCAAGTCCTCATGTTCCATAGTTGTTGTCCTTCCCAAATGCGAACTATAGGAGCATTTCGACCTCAATTGACACAGTTATTGATCCCCTCATCTTTAAGAAGCTTCAAAGTTAGAGCTCTCTCCTCTTCATCTCTGCCCTCCTCGAATCAATCTCGCGGTGGCCTTCCTCGCTTCTTTTCCCAAGTTCTACCTTCTCATAAGGGTGATGTTATTCGTTTAGAAGGCGATGAAGTCTGGCATATGACTAAAGTATTGAGGTTGAAGACTAATGATAGGGTGGAGCTGTTCAATGGAAATGGAGGTTTAGTTGAAGGGAGCATAAAGAACGTTCGTGTCAATGGACTTGACATCCTGGCTATGGAAGAACCAAAATCTGTTTTACCTCAAAGCACACAATGGCATGTATTTGCAGCTTGCGGTACTCTAAAGGGTGGGCGTGCTGATTGGCTTGTTGAAAAATGTACAGAACTAGGTGCCAGCAGTGTAACTCCTCTGCTAACAGAACGTTGCCCTACCATATCTGATAACCGGGTTCACAGATTTGAACGTATCACATTGGCAGCAACTAAACAATGTCAAAGACTGCACCAAATGAATCTGAATTCTCCCTTGAAAATTGATGGTCTTTTGCCCCTTATTAATGAAACGAAGCTATCTTTTGTAGCAGTTGCAGAAGCGACACCTCTCGTAAGTGCATTAGCTTCAACAAAAATAGAGTCTGGTGGGCTTTTAGTTATCGGACCTGAAGGAGACTTCACTGAGAAAGAGGTGAGCATGATGAAAGAAGCTGGAGCCATTGCAGTTGGTCTTGGCCCTTATCGACTTCGTGTTGAAACTGCAACAGTTGCAATCTTATCAACCCTCATGTTGTGGTCCGACTCAAAATGTTCCAACTGTTAATCTCTCTTTCAGGGTAGCTTCAAAATCAGCACCACTGCAAAGCCTCAACAGTATGAACGTTTGTGGTTTGAGGTATAATCTATTTGAGGATTGGTCTGTGATGATGGGACATCACGAGGAAGATTACAATTGTGTATTATGAGAAAGATTTCCTATACTAAAATTTCCATGTCATCCTTATGGTAGGGACCTATTGACATCAACAAAATTTGTAGAGTAAATACAGATAGTATTGATATTATGGGAGTAGTAGGAAATTATCCTTGTATTATGGTAGTTGAGTTGAAATGCATTTTTTGTTTTAGCGAACTACGTGGTTAAAATTTGATATGAATTCGATAGCCATTACATCAGATTCGAGAGATTGAAACGTTTTGG

Coding sequence (CDS)

ATGTTCCATAGTTGTTGTCCTTCCCAAATGCGAACTATAGGAGCATTTCGACCTCAATTGACACAGTTATTGATCCCCTCATCTTTAAGAAGCTTCAAAGTTAGAGCTCTCTCCTCTTCATCTCTGCCCTCCTCGAATCAATCTCGCGGTGGCCTTCCTCGCTTCTTTTCCCAAGTTCTACCTTCTCATAAGGGTGATGTTATTCGTTTAGAAGGCGATGAAGTCTGGCATATGACTAAAGTATTGAGGTTGAAGACTAATGATAGGGTGGAGCTGTTCAATGGAAATGGAGGTTTAGTTGAAGGGAGCATAAAGAACGTTCGTGTCAATGGACTTGACATCCTGGCTATGGAAGAACCAAAATCTGTTTTACCTCAAAGCACACAATGGCATGTATTTGCAGCTTGCGGTACTCTAAAGGGTGGGCGTGCTGATTGGCTTGTTGAAAAATGTACAGAACTAGGTGCCAGCAGTGTAACTCCTCTGCTAACAGAACGTTGCCCTACCATATCTGATAACCGGGTTCACAGATTTGAACGTATCACATTGGCAGCAACTAAACAATGTCAAAGACTGCACCAAATGAATCTGAATTCTCCCTTGAAAATTGATGGTCTTTTGCCCCTTATTAATGAAACGAAGCTATCTTTTGTAGCAGTTGCAGAAGCGACACCTCTCGTAAGTGCATTAGCTTCAACAAAAATAGAGTCTGGTGGGCTTTTAGTTATCGGACCTGAAGGAGACTTCACTGAGAAAGAGGTGAGCATGATGAAAGAAGCTGGAGCCATTGCAGTTGGTCTTGGCCCTTATCGACTTCGTGTTGAAACTGCAACAGTTGCAATCTTATCAACCCTCATGTTGTGGTCCGACTCAAAATGTTCCAACTGTTAA

Protein sequence

MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQVLPSHKGDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFERITLAATKQCQRLHQMNLNSPLKIDGLLPLINETKLSFVAVAEATPLVSALASTKIESGGLLVIGPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSKCSNC

Homology

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BLAST of Cmc01g0004331 vs. NCBI nr
Match: XP_008455052.1 (PREDICTED: ribosomal RNA small subunit methyltransferase E [Cucumis melo])

HSP 1 Score: 587.8 bits (1514), Expect = 5.2e-164
Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0


Query: 1   MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQVL 60
           MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQVL
Sbjct: 1   MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQVL 60

Query: 61  PSHKGDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEP 120
           PSHKGDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEP
Sbjct: 61  PSHKGDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEP 120

Query: 121 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFER 180
           KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFER
Sbjct: 121 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFER 180

Query: 181 ITLAATKQCQRLHQMNLNSPLKIDGLLPLINETKLSFVAVAEATPLVSALASTKIESGGL 240
           ITLAATKQCQRLHQMNLNSPLKIDGLLPLINETKLSFVAVAEATPLVSALASTKIESGGL
Sbjct: 181 ITLAATKQCQRLHQMNLNSPLKIDGLLPLINETKLSFVAVAEATPLVSALASTKIESGGL 240

Query: 241 LVIGPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSKCSNC 297
           LVIGPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSKCSNC
Sbjct: 241 LVIGPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSKCSNC 296

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BLAST of Cmc01g0004331 vs. NCBI nr
Match: KAA0031377.1 (ribosomal RNA small subunit methyltransferase E [Cucumis melo var. makuwa])

HSP 1 Score: 568.5 bits (1464), Expect = 3.3e-158
Identity = 290/296 (97.97%), Postives = 290/296 (97.97%), Query Frame = 0


Query: 1   MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQVL 60
           MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQ  
Sbjct: 1   MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQ-- 60

Query: 61  PSHKGDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEP 120
               GDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEP
Sbjct: 61  ----GDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEP 120

Query: 121 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFER 180
           KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFER
Sbjct: 121 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFER 180

Query: 181 ITLAATKQCQRLHQMNLNSPLKIDGLLPLINETKLSFVAVAEATPLVSALASTKIESGGL 240
           ITLAATKQCQRLHQMNLNSPLKIDGLLPLINETKLSFVAVAEATPLVSALASTKIESGGL
Sbjct: 181 ITLAATKQCQRLHQMNLNSPLKIDGLLPLINETKLSFVAVAEATPLVSALASTKIESGGL 240

Query: 241 LVIGPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSKCSNC 297
           LVIGPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSKCSNC
Sbjct: 241 LVIGPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSKCSNC 290

[Close]

BLAST of Cmc01g0004331 vs. NCBI nr
Match: TYK06829.1 (ribosomal RNA small subunit methyltransferase E [Cucumis melo var. makuwa])

HSP 1 Score: 565.5 bits (1456), Expect = 2.8e-157
Identity = 291/309 (94.17%), Postives = 292/309 (94.50%), Query Frame = 0


Query: 1   MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQ-- 60
           MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQ  
Sbjct: 1   MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQWS 60

Query: 61  -----------VLPSHKGDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNV 120
                      V+    GDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNV
Sbjct: 61  VDDSEFWETKNVVIMSGGDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNV 120

Query: 121 RVNGLDILAMEEPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERC 180
           RVNGLDILAMEEPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERC
Sbjct: 121 RVNGLDILAMEEPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERC 180

Query: 181 PTISDNRVHRFERITLAATKQCQRLHQMNLNSPLKIDGLLPLINETKLSFVAVAEATPLV 240
           PTISDNRVHRFERITLAATKQCQRLHQMNLNSPLKIDGLLPLINETKLSFVAVAEATPLV
Sbjct: 181 PTISDNRVHRFERITLAATKQCQRLHQMNLNSPLKIDGLLPLINETKLSFVAVAEATPLV 240

Query: 241 SALASTKIESGGLLVIGPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTLML 297
           SALASTKIESGGLLVIGPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTLML
Sbjct: 241 SALASTKIESGGLLVIGPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTLML 300

[Close]

BLAST of Cmc01g0004331 vs. NCBI nr
Match: XP_004136932.2 (uncharacterized protein LOC101213733 isoform X1 [Cucumis sativus] >XP_031744709.1 uncharacterized protein LOC101213733 isoform X1 [Cucumis sativus] >KGN43899.2 hypothetical protein Csa_017251 [Cucumis sativus])

HSP 1 Score: 560.8 bits (1444), Expect = 6.8e-156
Identity = 283/296 (95.61%), Postives = 288/296 (97.30%), Query Frame = 0


Query: 1   MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQVL 60
           MFHSCC SQMRTIGAFRPQLTQLL PS  RSFKVRALSSSSLPSSNQSRGGLPRFFSQVL
Sbjct: 1   MFHSCCSSQMRTIGAFRPQLTQLLNPSCFRSFKVRALSSSSLPSSNQSRGGLPRFFSQVL 60

Query: 61  PSHKGDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEP 120
           PS+KGDVIRLEGDEVWHMTKVLRLKT+DRVELFNGNGGLVEGSIKN+RVNGL+ILAMEEP
Sbjct: 61  PSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLEILAMEEP 120

Query: 121 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFER 180
           KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRV RFER
Sbjct: 121 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVQRFER 180

Query: 181 ITLAATKQCQRLHQMNLNSPLKIDGLLPLINETKLSFVAVAEATPLVSALASTKIESGGL 240
           I LAATKQCQRLHQMNLNSPLKIDGLLP INETKLSFVAVAEATPLVSALASTKIESGGL
Sbjct: 181 IALAATKQCQRLHQMNLNSPLKIDGLLPFINETKLSFVAVAEATPLVSALASTKIESGGL 240

Query: 241 LVIGPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSKCSNC 297
           LVIGPEGDFTEKEV+MMKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSK SNC
Sbjct: 241 LVIGPEGDFTEKEVNMMKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSKSSNC 296

[Close]

BLAST of Cmc01g0004331 vs. NCBI nr
Match: XP_038877548.1 (ribosomal RNA small subunit methyltransferase E isoform X1 [Benincasa hispida])

HSP 1 Score: 541.2 bits (1393), Expect = 5.6e-150
Identity = 274/296 (92.57%), Postives = 286/296 (96.62%), Query Frame = 0


Query: 1   MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQVL 60
           MFHSC  SQMR IGAFRP+LT+LL   S RSF+VRALSSSSL SSNQSRGGLPRFFSQVL
Sbjct: 1   MFHSCSSSQMRAIGAFRPRLTELLNRLSFRSFRVRALSSSSLASSNQSRGGLPRFFSQVL 60

Query: 61  PSHKGDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEP 120
           PS+KGDVIRLEGDEVWHMTKVLRLKT+DRVELFNGNGGLVEGSIKN+RVNGLDILAME+P
Sbjct: 61  PSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLDILAMEDP 120

Query: 121 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFER 180
           KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASS+TPLLTERCPTISDNRVHRFER
Sbjct: 121 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSLTPLLTERCPTISDNRVHRFER 180

Query: 181 ITLAATKQCQRLHQMNLNSPLKIDGLLPLINETKLSFVAVAEATPLVSALASTKIESGGL 240
           ITLAATKQCQRLHQM+LNSPLKIDGLL LINETKLSFVAVAEATPLVSALAST+IESGGL
Sbjct: 181 ITLAATKQCQRLHQMDLNSPLKIDGLLHLINETKLSFVAVAEATPLVSALASTEIESGGL 240

Query: 241 LVIGPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSKCSNC 297
           LVIGPEGDFTEKEV+MMKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSK S+C
Sbjct: 241 LVIGPEGDFTEKEVNMMKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSKSSSC 296

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BLAST of Cmc01g0004331 vs. ExPASy Swiss-Prot
Match: Q8K9E4 (Ribosomal RNA small subunit methyltransferase E OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) OX=198804 GN=rsmE PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.3e-15
Identity = 67/245 (27.35%), Postives = 119/245 (48.57%), Query Frame = 0


Query: 54  RFFSQVLPSHKGDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLD 113
           ++F Q+       VI L      ++ KVLR+K  D++E+FN    +    I  +  + ++
Sbjct: 11  KYFLQI-----NQVISLSKSYTHYIKKVLRMKKKDKLEIFNNTNYIFFSEILEINNHTIE 70

Query: 114 ILAMEEPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCP----- 173
           I+ +++    L      H+       K  + ++ ++K  ELG +++TPL +E C      
Sbjct: 71  IIILKKQIKNLESPLLIHLGQVIS--KNEKMNFSIQKSVELGVNTITPLFSEYCNFQNKL 130

Query: 174 -TISDNRVHRFERITLAATKQCQRLHQMNLNSPLKIDGLLPLI-----NETKLSFVAVAE 233
                 ++H +E I +++ +QC R +   + +P   + +LP       NETK+ F     
Sbjct: 131 ICFPKKKIH-WENIVISSCEQCHRNNIPEIKNP---EYILPWCKRTYENETKIVF--SPS 190

Query: 234 ATPLVSALASTKIESGGLLVIGPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAIL 288
           AT  ++ L   KI    LL IG EG F+  E+  + + G I + LGP  LR ETA +A +
Sbjct: 191 ATFTINELPE-KINCVRLL-IGSEGGFSFLEIEKIIQYGFIPIKLGPRILRTETAVIAAI 240

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BLAST of Cmc01g0004331 vs. ExPASy Swiss-Prot
Match: Q92J59 (Ribosomal RNA small subunit methyltransferase E OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=rsmE PE=3 SV=2)

HSP 1 Score: 82.4 bits (202), Expect = 9.3e-15
Identity = 62/222 (27.93%), Postives = 100/222 (45.05%), Query Frame = 0


Query: 68  IRLEGDEVWHMTK-VLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEPKSVLPQ 127
           I L  D   H  K VLRLK ND + LFNG  G     I ++  N L +   E+ K    +
Sbjct: 18  IELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQINDIGKNNLSVRLKEQLKKPYTK 77

Query: 128 STQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFERITLAAT 187
           ST   +  A   +K  +    +   T+LG + + PL+T  C   S N + R  +  + AT
Sbjct: 78  ST---LTLAVAIIKQDKLMLAINMATQLGITKIIPLITRWCQFRSVN-IERLTKCVIEAT 137

Query: 188 KQCQRLHQMNLNSPLKIDGLLPLINETKLSFVAVAEATPLVSALASTKIESGGLLVIGPE 247
           +Q +RL    +   + I   L   N   L      +    +  ++S+   S   +++GPE
Sbjct: 138 EQSERLTPPIIEKAITIQDYLKKNNNLMLYANEHEKEENSILRISSSLSNSDITIIVGPE 197

Query: 248 GDFTEKEVSMMKE-AGAIAVGLGPYRLRVETATVAILSTLML 288
           G FT  E+ ++       ++ LG   LR ETA +  ++ + L
Sbjct: 198 GGFTNDELELLASYKNTKSISLGSNILRAETAAITAIAQVRL 235

[Close]

BLAST of Cmc01g0004331 vs. ExPASy Swiss-Prot
Match: P54461 (Ribosomal RNA small subunit methyltransferase E OS=Bacillus subtilis (strain 168) OX=224308 GN=rsmE PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.5e-14
Identity = 61/227 (26.87%), Postives = 104/227 (45.81%), Query Frame = 0


Query: 70  LEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEPKSVLPQSTQ 129
           + G+EV H+  V+R+   D++   + +G   +  +++V  + +  L +E       +   
Sbjct: 21  ITGEEVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWTNE--NRELP 80

Query: 130 WHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRV-----HRFERITLA 189
             V+ A G  KG + +W+++K TELGA +  P    R     D++       R+ +I   
Sbjct: 81  IKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKE 140

Query: 190 ATKQCQRLHQMNLNSPLKIDGLLPLINETKLSFVAVAEAT-----PLVSALASTKIESGG 249
           A +Q  R     +        LL  + +     VA  E++        SA+ S+  +   
Sbjct: 141 AAEQSYRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSS 200

Query: 250 LLVI-GPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTL 286
           LL++ GPEG  TE EV  + E   +  GLGP  LR ETA +  LS +
Sbjct: 201 LLIVFGPEGGLTEAEVERLTEQDGVTCGLGPRILRTETAPLYALSAI 245

[Close]

BLAST of Cmc01g0004331 vs. ExPASy Swiss-Prot
Match: P44627 (Ribosomal RNA small subunit methyltransferase E OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=rsmE PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.3e-13
Identity = 62/236 (26.27%), Postives = 115/236 (48.73%), Query Frame = 0


Query: 70  LEGDEVWHMTKVLRLKTNDRVELFNGN-----GGLVEGSIKNVRVNGLDILAMEEPKSVL 129
           L  D   H+ +VLR+   +++ELF+G+       ++E + K+V+V   +IL  E    + 
Sbjct: 20  LSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKSVKV---EILGRE----LA 79

Query: 130 PQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERC-----PTISDNRVHRFE 189
            + +   +       +G R ++ ++K  ELG + +TPL +ERC         D ++ +++
Sbjct: 80  DKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQ 139

Query: 190 RITLAATKQCQRLHQMNLNSPLKI-------DGLLPLINETKLSFVAVAEATPLVSALAS 249
           +I +AA +QC R     +   +K+       DG L L    +  +          S    
Sbjct: 140 KIAIAACEQCGRNIVPEIRPLMKLQDWCAENDGALKLNLHPRAHY----------SIKTL 199

Query: 250 TKIESGGL-LVIGPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTLML 288
             I +GG+ L+IG EG  + +E++  ++ G   + LG   LR ETA++A +S L +
Sbjct: 200 PTIPAGGVRLLIGSEGGLSAQEIAQTEQQGFTEILLGKRVLRTETASLAAISALQI 238

[Close]

BLAST of Cmc01g0004331 vs. ExPASy Swiss-Prot
Match: P72667 (Ribosomal RNA small subunit methyltransferase E OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rsmE PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.1e-13
Identity = 60/222 (27.03%), Postives = 104/222 (46.85%), Query Frame = 0


Query: 68  IRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEPKSVLPQS 127
           + L   ++ ++ +VLRL+  D   + +G GG+    + ++      +L     ++ LP  
Sbjct: 80  VTLTTAQLHYLQRVLRLQKGDGFMVLDGGGGVWRAQLNDLAHGTAQLLETVSEQNELPLP 139

Query: 128 TQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTER-CPTISDNRVHRFERITLAAT 187
               V  A    KG   + ++  CTELGA++  PLLTER     S N++ R++RI   A 
Sbjct: 140 ----VTLAIALPKGSGFEEIIRPCTELGATAFQPLLTERTLLKPSQNKLERWQRIVTEAA 199

Query: 188 KQCQRLHQMNLNSPLKIDGLLPLI--NETKLSFVAVAEATPLVSA-LASTKIESGGLLVI 247
           +Q +R     + +PL     +  +   ET          +P++ A L  + + +  +L  
Sbjct: 200 EQSERQWLPPVAAPLTFGQFVEKVAGPETLALLCVTRLNSPMLGAYLKQSNLPAQIVLAT 259

Query: 248 GPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTL 286
           GPEG +T+ E+S+    G   V LG   LR  TA    L+ +
Sbjct: 260 GPEGGWTDNEISLAIAKGFQPVSLGKRILRAVTAPTVALAQI 297

[Close]

BLAST of Cmc01g0004331 vs. ExPASy TrEMBL
Match: A0A1S3BZZ7 (16S rRNA (uracil(1498)-N(3))-methyltransferase OS=Cucumis melo OX=3656 GN=LOC103495322 PE=3 SV=1)

HSP 1 Score: 587.8 bits (1514), Expect = 2.5e-164
Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0


Query: 1   MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQVL 60
           MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQVL
Sbjct: 1   MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQVL 60

Query: 61  PSHKGDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEP 120
           PSHKGDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEP
Sbjct: 61  PSHKGDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEP 120

Query: 121 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFER 180
           KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFER
Sbjct: 121 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFER 180

Query: 181 ITLAATKQCQRLHQMNLNSPLKIDGLLPLINETKLSFVAVAEATPLVSALASTKIESGGL 240
           ITLAATKQCQRLHQMNLNSPLKIDGLLPLINETKLSFVAVAEATPLVSALASTKIESGGL
Sbjct: 181 ITLAATKQCQRLHQMNLNSPLKIDGLLPLINETKLSFVAVAEATPLVSALASTKIESGGL 240

Query: 241 LVIGPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSKCSNC 297
           LVIGPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSKCSNC
Sbjct: 241 LVIGPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSKCSNC 296

[Close]

BLAST of Cmc01g0004331 vs. ExPASy TrEMBL
Match: A0A5A7SPG3 (16S rRNA (uracil(1498)-N(3))-methyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G001330 PE=3 SV=1)

HSP 1 Score: 568.5 bits (1464), Expect = 1.6e-158
Identity = 290/296 (97.97%), Postives = 290/296 (97.97%), Query Frame = 0


Query: 1   MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQVL 60
           MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQ  
Sbjct: 1   MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQ-- 60

Query: 61  PSHKGDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEP 120
               GDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEP
Sbjct: 61  ----GDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEP 120

Query: 121 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFER 180
           KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFER
Sbjct: 121 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFER 180

Query: 181 ITLAATKQCQRLHQMNLNSPLKIDGLLPLINETKLSFVAVAEATPLVSALASTKIESGGL 240
           ITLAATKQCQRLHQMNLNSPLKIDGLLPLINETKLSFVAVAEATPLVSALASTKIESGGL
Sbjct: 181 ITLAATKQCQRLHQMNLNSPLKIDGLLPLINETKLSFVAVAEATPLVSALASTKIESGGL 240

Query: 241 LVIGPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSKCSNC 297
           LVIGPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSKCSNC
Sbjct: 241 LVIGPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSKCSNC 290

[Close]

BLAST of Cmc01g0004331 vs. ExPASy TrEMBL
Match: A0A5D3C8Z9 (16S rRNA (uracil(1498)-N(3))-methyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001330 PE=3 SV=1)

HSP 1 Score: 565.5 bits (1456), Expect = 1.3e-157
Identity = 291/309 (94.17%), Postives = 292/309 (94.50%), Query Frame = 0


Query: 1   MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQ-- 60
           MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQ  
Sbjct: 1   MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQWS 60

Query: 61  -----------VLPSHKGDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNV 120
                      V+    GDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNV
Sbjct: 61  VDDSEFWETKNVVIMSGGDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNV 120

Query: 121 RVNGLDILAMEEPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERC 180
           RVNGLDILAMEEPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERC
Sbjct: 121 RVNGLDILAMEEPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERC 180

Query: 181 PTISDNRVHRFERITLAATKQCQRLHQMNLNSPLKIDGLLPLINETKLSFVAVAEATPLV 240
           PTISDNRVHRFERITLAATKQCQRLHQMNLNSPLKIDGLLPLINETKLSFVAVAEATPLV
Sbjct: 181 PTISDNRVHRFERITLAATKQCQRLHQMNLNSPLKIDGLLPLINETKLSFVAVAEATPLV 240

Query: 241 SALASTKIESGGLLVIGPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTLML 297
           SALASTKIESGGLLVIGPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTLML
Sbjct: 241 SALASTKIESGGLLVIGPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTLML 300

[Close]

BLAST of Cmc01g0004331 vs. ExPASy TrEMBL
Match: A0A6J1IBI6 (16S rRNA (uracil(1498)-N(3))-methyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111470992 PE=3 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 9.0e-146
Identity = 265/295 (89.83%), Postives = 280/295 (94.92%), Query Frame = 0


Query: 1   MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQVL 60
           MFHSC   QMRTIGA RPQLT+L   S  RSF+VRALSSSSL SSNQSRGGLPRFFSQVL
Sbjct: 18  MFHSCSSLQMRTIGAIRPQLTELFDRSCFRSFRVRALSSSSLASSNQSRGGLPRFFSQVL 77

Query: 61  PSHKGDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEP 120
           PS+KGD+IRLEGDEVWHMTKVLRLKT+DRVELFNGNGGLVEGSIKN+RVNG+DILAME+P
Sbjct: 78  PSYKGDIIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGIDILAMEDP 137

Query: 121 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFER 180
           KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERC TISDNRVHRFER
Sbjct: 138 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCATISDNRVHRFER 197

Query: 181 ITLAATKQCQRLHQMNLNSPLKIDGLLPLINETKLSFVAVAEATPLVSALASTKIESGGL 240
           ITLAATKQCQRLHQM+LNSPLKIDGLL +INE+KLSFVAVAEATPLVSALAS + ESGGL
Sbjct: 198 ITLAATKQCQRLHQMSLNSPLKIDGLLHIINESKLSFVAVAEATPLVSALASIETESGGL 257

Query: 241 LVIGPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSKCSN 296
           LV+GPEGDFTEKEV+M+KEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSK SN
Sbjct: 258 LVVGPEGDFTEKEVNMIKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSKSSN 312

[Close]

BLAST of Cmc01g0004331 vs. ExPASy TrEMBL
Match: A0A6J1GL34 (16S rRNA (uracil(1498)-N(3))-methyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111454941 PE=3 SV=1)

HSP 1 Score: 520.8 bits (1340), Expect = 3.8e-144
Identity = 266/295 (90.17%), Postives = 277/295 (93.90%), Query Frame = 0


Query: 1   MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQVL 60
           MFHS    QMRTIGA RPQLT+L   S  RSF VRALSSSSL SSNQSRGGLPRFFSQVL
Sbjct: 18  MFHSSSSLQMRTIGAIRPQLTELFNRSCFRSFGVRALSSSSLASSNQSRGGLPRFFSQVL 77

Query: 61  PSHKGDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEP 120
           PS+KGDVIRLEGDEVWHMTKVLRLKT+DRVELFNGNGGLVEGSIKNVRVNGLDILAME+P
Sbjct: 78  PSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNVRVNGLDILAMEDP 137

Query: 121 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFER 180
           KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERC TISDNRVHRFER
Sbjct: 138 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCATISDNRVHRFER 197

Query: 181 ITLAATKQCQRLHQMNLNSPLKIDGLLPLINETKLSFVAVAEATPLVSALASTKIESGGL 240
           ITLAATKQCQRLHQM+LNSPLKIDGLL +INE+KLSFVAVAEATPLVSALAS + ESGGL
Sbjct: 198 ITLAATKQCQRLHQMSLNSPLKIDGLLHIINESKLSFVAVAEATPLVSALASIETESGGL 257

Query: 241 LVIGPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSKCSN 296
           LV+GPEGDFTEKEV+MMKEAGAI VGLGPYRLRVETATVAILSTLMLWSDS+ SN
Sbjct: 258 LVVGPEGDFTEKEVNMMKEAGAIPVGLGPYRLRVETATVAILSTLMLWSDSRSSN 312

[Close]

BLAST of Cmc01g0004331 vs. TAIR 10
Match: AT1G50000.1 (methyltransferases )

HSP 1 Score: 351.7 bits (901), Expect = 5.9e-97
Identity = 181/279 (64.87%), Postives = 215/279 (77.06%), Query Frame = 0


Query: 18  PQLTQLLIPSSLRSFKVRALSSSSLPSS----NQSRGGLPRFFSQVLPSHKGDVIRLEGD 77
           P L +  +P+S  SFK  A  SSS PS     NQSRGGLPRFFS  LPS KG V+R++G 
Sbjct: 17  PSLVRSWLPTS--SFKSFATVSSSPPSDLNLRNQSRGGLPRFFSDDLPSRKGGVVRVQGS 76

Query: 78  EVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEPKSVLPQSTQWHVF 137
           E WHM KVLRLK  DRVELFNG GGLVEG I+++   G+D +A E+ K +LPQ  QW VF
Sbjct: 77  EFWHMAKVLRLKQEDRVELFNGKGGLVEGCIQSIDKTGVDFIAQEDQKVILPQGMQWQVF 136

Query: 138 AACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFERITLAATKQCQRLH 197
           AA GTLKGGRADWL+EKCTELGASSVTPLLTER P IS+NRV R ER++ AA KQCQRLH
Sbjct: 137 AAFGTLKGGRADWLIEKCTELGASSVTPLLTERSPIISENRVDRLERVSFAAAKQCQRLH 196

Query: 198 QMNLNSPLKIDGLLPLINETKLSFVAVAEATPLVSALASTKIESGGLLVIGPEGDFTEKE 257
           QM LN P+K   LL  I ++KL  VA AEA PL++A+ S+  ES GLL++GPEGDFT+KE
Sbjct: 197 QMVLNPPIKFGTLLDHILKSKLCLVATAEAKPLLNAVNSSAKESSGLLIVGPEGDFTKKE 256

Query: 258 VSMMKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSK 293
           V MM EAG  AVGLGP+RLRVETAT+A+L+TL++WSDS+
Sbjct: 257 VEMMLEAGGTAVGLGPHRLRVETATIALLATLVMWSDSQ 293

[Close]

BLAST of Cmc01g0004331 vs. TAIR 10
Match: AT1G50000.2 (methyltransferases )

HSP 1 Score: 247.7 bits (631), Expect = 1.2e-65
Identity = 127/194 (65.46%), Postives = 145/194 (74.74%), Query Frame = 0


Query: 18  PQLTQLLIPSSLRSFKVRALSSSSLPSS----NQSRGGLPRFFSQVLPSHKGDVIRLEGD 77
           P L +  +P+S  SFK  A  SSS PS     NQSRGGLPRFFS  LPS KG V+R++G 
Sbjct: 17  PSLVRSWLPTS--SFKSFATVSSSPPSDLNLRNQSRGGLPRFFSDDLPSRKGGVVRVQGS 76

Query: 78  EVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEPKSVLPQSTQWHVF 137
           E WHM KVLRLK  DRVELFNG GGLVEG I+++   G+D +A E+ K +LPQ  QW VF
Sbjct: 77  EFWHMAKVLRLKQEDRVELFNGKGGLVEGCIQSIDKTGVDFIAQEDQKVILPQGMQWQVF 136

Query: 138 AACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFERITLAATKQCQRLH 197
           AA GTLKGGRADWL+EKCTELGASSVTPLLTER P IS+NRV R ER++ AA KQCQRLH
Sbjct: 137 AAFGTLKGGRADWLIEKCTELGASSVTPLLTERSPIISENRVDRLERVSFAAAKQCQRLH 196

Query: 198 QMNLNSPLKIDGLL 208
           QM LN P+K   LL
Sbjct: 197 QMVLNPPIKFGTLL 208

The following BLAST results are available for this feature:

BLAST of Cmc01g0004331 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455052.1	5.2e-164	100.00	PREDICTED: ribosomal RNA small subunit methyltransferase E [Cucumis melo]	[more]
KAA0031377.1	3.3e-158	97.97	ribosomal RNA small subunit methyltransferase E [Cucumis melo var. makuwa]	[more]
TYK06829.1	2.8e-157	94.17	ribosomal RNA small subunit methyltransferase E [Cucumis melo var. makuwa]	[more]
XP_004136932.2	6.8e-156	95.61	uncharacterized protein LOC101213733 isoform X1 [Cucumis sativus] >XP_031744709....	[more]
XP_038877548.1	5.6e-150	92.57	ribosomal RNA small subunit methyltransferase E isoform X1 [Benincasa hispida]	[more]

BLAST of Cmc01g0004331 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8K9E4	9.3e-15	27.35	Ribosomal RNA small subunit methyltransferase E OS=Buchnera aphidicola subsp. Sc...	[more]
Q92J59	9.3e-15	27.93	Ribosomal RNA small subunit methyltransferase E OS=Rickettsia conorii (strain AT...	[more]
P54461	3.5e-14	26.87	Ribosomal RNA small subunit methyltransferase E OS=Bacillus subtilis (strain 168...	[more]
P44627	2.3e-13	26.27	Ribosomal RNA small subunit methyltransferase E OS=Haemophilus influenzae (strai...	[more]
P72667	5.1e-13	27.03	Ribosomal RNA small subunit methyltransferase E OS=Synechocystis sp. (strain PCC...	[more]

BLAST of Cmc01g0004331 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BZZ7	2.5e-164	100.00	16S rRNA (uracil(1498)-N(3))-methyltransferase OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5A7SPG3	1.6e-158	97.97	16S rRNA (uracil(1498)-N(3))-methyltransferase OS=Cucumis melo var. makuwa OX=11...	[more]
A0A5D3C8Z9	1.3e-157	94.17	16S rRNA (uracil(1498)-N(3))-methyltransferase OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1IBI6	9.0e-146	89.83	16S rRNA (uracil(1498)-N(3))-methyltransferase OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1GL34	3.8e-144	90.17	16S rRNA (uracil(1498)-N(3))-methyltransferase OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of Cmc01g0004331 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G50000.1	5.9e-97	64.87	methyltransferases	[more]
AT1G50000.2	1.2e-65	65.46	methyltransferases	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006700	Ribosomal RNA small subunit methyltransferase E	TIGRFAM	TIGR00046	TIGR00046	coord: 67..286 e-value: 4.0E-40 score: 135.6
IPR006700	Ribosomal RNA small subunit methyltransferase E	PFAM	PF04452	Methyltrans_RNA	coord: 69..286 e-value: 8.1E-52 score: 175.8
IPR006700	Ribosomal RNA small subunit methyltransferase E	PANTHER	PTHR30027	RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E	coord: 52..292
IPR029026	tRNA (guanine-N1-)-methyltransferase, N-terminal	GENE3D	3.40.1280.10		coord: 51..295 e-value: 3.6E-63 score: 214.9
None	No IPR available	CDD	cd18084	RsmE-like	coord: 135..283 e-value: 8.6634E-45 score: 147.693
IPR015947	PUA-like superfamily	SUPERFAMILY	88697	PUA domain-like	coord: 57..108
IPR029028	Alpha/beta knot methyltransferases	SUPERFAMILY	75217	alpha/beta knot	coord: 128..289

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0004331.1	Cmc01g0004331.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070475	rRNA base methylation
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0070042	rRNA (uridine-N3-)-methyltransferase activity
molecular_function	GO:0008168	methyltransferase activity